mRNA_15780 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150377
Unique NamemRNA_15780
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA)

HSP 1 Score: 296 bits (759), Expect = 6.390e-102
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA 432
            WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA
Sbjct:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA 144          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A835Z4C0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C0_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.540e-57
Identity = 85/142 (59.86%), Postives = 110/142 (77.46%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426
            W+ +ED+RLR  V  F  ++W R +A VGTK A QCMQRW+R+L+PD++KGRW  EEDALL++L+T+G+ +W+E +  I GRSAKQCRERW HHL+PAV++  FTP ED  +V+ QAA GN W+ IAA LPGRTEN VK RW
Sbjct:   11 WSPEEDDRLRRGVDMFAARNWRRISAVVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQCRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRW 152          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A835YK87_9STRA (Homeodomain-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK87_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.190e-57
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426
            W+ +ED RL  AV TF  K+W R +A VGTK A QCMQRWRR+L+PD++KGRW  EEDALL++L+T+G  +W E +  I GRSAKQCRERW HHLDPAV++  F P ED ++++ QAA GN W+ IAA LPGRTEN VK RW
Sbjct:   22 WSPEEDGRLTRAVETFDEKNWRRISAVVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQCRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRW 163          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A836C964_9STRA (Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C964_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.340e-46
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   82 VGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQ--CRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426
            VGTK A QCMQRWRR+L+PD++KGRW  EEDALL++L+T+G  +W E +  I GRSAKQ  CRERW HHLDPAVS+  FT  ED ++V+ QAA GN W+ IAA LPGRTEN VK RW
Sbjct:    2 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRW 118          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.200e-42
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426
            W+ +EDERLR AV  + G SW   AA V T+   QC+QRW++ L P + KG+W  EED LL+ ++  GH +W   +  +PGR++KQCRERW HHLDP + +  +T  ED ++V++Q   GN WA+IA  L GRTEN  K RW
Sbjct:   71 WSPEEDERLRAAVERYHGTSWKEIAAEVKTRNHVQCLQRWKKVLTPGLVKGQWTPEEDKLLVSIVNEGHKNWGSLSARVPGRTSKQCRERWCHHLDPRIVKGGWTEEEDQIIVSLQQQMGNKWAKIAQHLDGRTENATKIRW 212          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 149 bits (376), Expect = 2.490e-42
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426
            W  +ED++LR AV   G ++W   A  V  +  TQC+QRW + L P + KG WR EED LL +L+  G  +W + A  IPGR++KQCRERW +HLDP++ R  ++P ED +++  QA  GN W+ IAA LPGRTE+ VK RW
Sbjct:   85 WTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 226          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.680e-42
Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA 432
            W   EDE LR AV  +G  +W   A  VGT+   QC+QRW++ L+P + KG+W   EDA L+DL+ +G  +W + A  +PGR++KQCRERW HHLDP+V +  +T  ED  ++ +Q+  GN W+ IA  LPGRTEN VK RW A
Sbjct:   30 WTLVEDEELRHAVRKYGESNWKDIAREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRWKA 173          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 145 bits (366), Expect = 9.580e-42
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426
            W  +EDE+LR AV   G ++W   A  V  +  TQC+QRW + L P + KG WR +ED LL +L+  G  +W + A  IPGR++KQCRERW +HLDP++ R  ++  ED +++  QA  GN W+ IAA LPGRTE+ VK RW
Sbjct:   12 WTPEEDEKLREAVNRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 153          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A8K1CQU9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQU9_PYTOL)

HSP 1 Score: 155 bits (392), Expect = 3.200e-41
Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426
            W ++ED+RLR AV   G ++W   A  V  +  TQC+QRW + L P + KG WR +ED LL +L+  G  +W + A  IPGR++KQCRERW +HLDP++ R  +TP ED +++  QA  GN W+ IAA LPGRTE+ VK RW
Sbjct:  139 WTQEEDDRLRAAVGKHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVANRIPGRTSKQCRERWYNHLDPSIVRGEYTPEEDRIILEAQARLGNKWSTIAAMLPGRTEDAVKIRW 280          
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Match: A0A3M6VKU0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKU0_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.690e-41
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 426
            W   EDE+LR AV   G ++W   A  V  +  TQC+QRW + L P + KG WR +ED LL +L+  G  +W + A  IPGR++KQCRERW +HLDP++ R  ++ AED +++  Q+  GN W+ IAA LPGRTE+ VK RW
Sbjct:  102 WTPTEDEKLRDAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSQAEDRMILDAQSRLGNRWSAIAAMLPGRTEDAVKIRW 243          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150377 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2Q0_9STRA6.390e-102100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835Z4C0_9STRA1.540e-5759.86Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835YK87_9STRA2.190e-5761.27Homeodomain-like protein n=2 Tax=Tribonema minus T... [more]
A0A836C964_9STRA1.340e-4664.96Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tr... [more]
A0A6H5K458_9PHAE1.200e-4248.59MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D0NJN5_PHYIT2.490e-4248.59Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
A0A7S2UU49_9STRA3.680e-4248.61Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
H3G911_PHYRM9.580e-4247.89Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8K1CQU9_PYTOL3.200e-4149.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VKU0_9STRA3.690e-4147.89Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_203contigContig_203:222426..223548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150377|gw1.203.27.1
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2880.D7FQG8|-
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue1.49e-41
Seed ortholog2880.D7FQG8
Hectar predicted targeting categoryother localisation
TranscriptId150699
TrackFilteredModels1
ProteinId150377
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150377gene_15780Tribonema minus UTEX_B_3156 geneContig_203 222426..223548 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15780_1exon_15780_1Tribonema minus UTEX_B_3156 exonContig_203 222426..222650 +
exon_15780_2exon_15780_2Tribonema minus UTEX_B_3156 exonContig_203 223342..223548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15780CDS_15780Tribonema minus UTEX_B_3156 CDSContig_203 222426..222650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150377Trimin1|150377|gw1.203.27.1Tribonema minus UTEX_B_3156 polypeptideContig_203 222426..223548 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15780 ID=mRNA_15780|Name=jgi.p|Trimin1|150377|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_203:222426..223548+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGAATGAGGACGAAGACGAGCGGCTGCGCTGCGCGGTCGCGACGTTCGG
CGGCAAGAGCTGGCCGCGCGCCGCGGCGGCGGTCGGCACCAAGACCGCGA
CGCAGTGCATGCAGCGCTGGCGGCGCGCGCTGCAGCCCGACATGCGCAAG
GGGCGCTGGCGCGACGAGGAGGACGCGCTGCTGCTGGATCTGATGACTCG
CGGGCACGACTCGTGGTCGGAGTTTGCGCGCCACATCCCCGGGCGCAGCG
CCAAGCAGTGCCGCGAGCGCTGGCGCCACCACCTCGACCCCGCCGTGAGC
AGGGCGCGCTTCACGCCCGCGGAGGACGCCGTCGTCGTCGCCATGCAGGC
CGCGCGCGGCAACGCGTGGGCGCGCATCGCCGCACGCCTGCCGGGCCGCA
CCGAGAACACCGTCAAGACGCGCTGGACGGCG
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protein sequence of jgi.p|Trimin1|150377

>Trimin1|150377|gw1.203.27.1 ID=Trimin1|150377|gw1.203.27.1|Name=jgi.p|Trimin1|150377|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
WNEDEDERLRCAVATFGGKSWPRAAAAVGTKTATQCMQRWRRALQPDMRK
GRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQCRERWRHHLDPAVS
RARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRWTA
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mRNA from alignment at Contig_203:222426..223548+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15780 ID=mRNA_15780|Name=jgi.p|Trimin1|150377|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1123bp|location=Sequence derived from alignment at Contig_203:222426..223548+ (Tribonema minus UTEX_B_3156 )
TGGAATGAGGACGAAGACGAGCGGCTGCGCTGCGCGGTCGCGACGTTCGG CGGCAAGAGCTGGCCGCGCGCCGCGGCGGCGGTCGGCACCAAGACCGCGA CGCAGTGCATGCAGCGCTGGCGGCGCGCGCTGCAGCCCGACATGCGCAAG GGGCGCTGGCGCGACGAGGAGGACGCGCTGCTGCTGGATCTGATGACTCG CGGGCACGACTCGTGGTCGGAGTTTGTGAGTCGCGTCACTCAGTCTGACG CTGTGGCGGTTGAACTTCAAGTGCGAACCTGTTACAGTTAGTAACTGTAG GCTACGTTACTGATACTGCTGTTGCTGTGTACATCATCGACGGCTGTGGT GACAGCAGCGGTCGTGGCAGCAGCAGCAGCGATCATGAACATCCGCTGCA GTGCGGTACTGCGTGCAATCAAAACGCTTGTATACTGTGGCAGCCAGCAT CAGATCCTGGAGCCATCGGCAAATGGTTCATTCAGGAGACCTTTCTGCAC TCAGTCTGCATGAGCCTCTGAGTCAGCCGCTGCGGCTCATGCGCAGCGTG CCACAGTGTGATGGCAGCGTCGAAGAGGAATGAACAAATTCGTCGTTTCA CAGCAGCTGCACCTCATCTGACGAGATGCTGAGGCAATGCTGCAGCACAC AGTTGGCGTGGTCCGCAAACTTCGACAAGCGTCCCTGGCGGGCTCAGGAC TCTCAAAAATAAAGAGTCTTCAGGCATTCCAACCTATCTGTCAGGCTGAG CACGCACTTCAAGGTACGATACACAATGCCCTTAATCTGCTCATTTCGTC AAGCCTGAGGGCATGTGCCGCAGTGCCGTAATGTCATTGTGCTTCAATGC GTGCCTCTGACGCTTCCTGCGCCCCCCCCCCCCCCCCTCCCCCCGCCCCC CTCCCCCCTGCGCCAGGCGCGCCACATCCCCGGGCGCAGCGCCAAGCAGT GCCGCGAGCGCTGGCGCCACCACCTCGACCCCGCCGTGAGCAGGGCGCGC TTCACGCCCGCGGAGGACGCCGTCGTCGTCGCCATGCAGGCCGCGCGCGG CAACGCGTGGGCGCGCATCGCCGCACGCCTGCCGGGCCGCACCGAGAACA CCGTCAAGACGCGCTGGACGGCG
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Coding sequence (CDS) from alignment at Contig_203:222426..223548+

>mRNA_15780 ID=mRNA_15780|Name=jgi.p|Trimin1|150377|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_203:222426..223548+ (Tribonema minus UTEX_B_3156 )
TGGAATGAGGACGAAGACGAGCGGCTGCGCTGCGCGGTCGCGACGTTCGG
CGGCAAGAGCTGGCCGCGCGCCGCGGCGGCGGTCGGCACCAAGACCGCGA
CGCAGTGCATGCAGCGCTGGCGGCGCGCGCTGCAGCCCGACATGCGCAAG
GGGCGCTGGCGCGACGAGGAGGACGCGCTGCTGCTGGATCTGATGACTCG
CGGGCACGACTCGTGGTCGGAGTTTGCGCGCCACATCCCCGGGCGCAGCG
CCAAGCAGTGCCGCGAGCGCTGGCGCCACCACCTCGACCCCGCCGTGAGC
AGGGCGCGCTTCACGCCCGCGGAGGACGCCGTCGTCGTCGCCATGCAGGC
CGCGCGCGGCAACGCGTGGGCGCGCATCGCCGCACGCCTGCCGGGCCGCA
CCGAGAACACCGTCAAGACGCGCTGGACGGCG
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