Trimin1|348144|estExt_Genemark1.C_Ctg_200068 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348144
Unique NameTrimin1|348144|estExt_Genemark1.C_Ctg_200068
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length137
Homology
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BLAST of jgi.p|Trimin1|348144 vs. uniprot
Match: A0A836CGW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW7_9STRA)

HSP 1 Score: 260 bits (665), Expect = 7.950e-88
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 
Query:    1 MLLSARIRQLGIGSRVLAAGLKSGSGGGVPNALHFTTAISACAAAGSSASASDIWRLMLSQDKPAQRWAALLDIIGAAGQADQMLAMYREMRASGHRPDVFVLNIMLAHAGGTDSCSVAEPVWGELQQYDKEADEA 136
            MLLSARIRQLGIGSRVLAAGLKSGSGGGVPNALHFTTAISACAAAGSSASASDIWRLMLSQDKPAQRWAALLDIIGAAGQADQMLAMYREMRASGHRPDVFVLNIMLAHAGGTDSCSVAEPVWGELQQYDKEADEA
Sbjct:    1 MLLSARIRQLGIGSRVLAAGLKSGSGGGVPNALHFTTAISACAAAGSSASASDIWRLMLSQDKPAQRWAALLDIIGAAGQADQMLAMYREMRASGHRPDVFVLNIMLAHAGGTDSCSVAEPVWGELQQYDKEADEA 136
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BLAST of jgi.p|Trimin1|348144 vs. uniprot
Match: A0A836CHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.560e-9
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:   79 GQADQMLAMYREMRASGHRPDVFVLNIMLAHAGGTDSCSVAEPVWGELQ 127
            G+ D+MLA+Y+ MRASGH PDV  +N MLAHAG   +  VAE +W EL+
Sbjct:  812 GRVDEMLALYKNMRASGHEPDVIAINDMLAHAGSAGNRDVAEALWRELR 860
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348144 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CGW7_9STRA7.950e-88100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHU7_9STRA3.560e-957.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 68..100
e-value: 6.9E-5
score: 20.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 64..98
score: 8.79102
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 6..136
e-value: 2.1E-14
score: 55.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:599404..600456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348144mRNA_4111Tribonema minus UTEX_B_3156 mRNAContig_20 599404..601383 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348144|estExt_Genemark1.C_Ctg_200068 ID=Trimin1|348144|estExt_Genemark1.C_Ctg_200068|Name=jgi.p|Trimin1|348144|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp
MLLSARIRQLGIGSRVLAAGLKSGSGGGVPNALHFTTAISACAAAGSSAS
ASDIWRLMLSQDKPAQRWAALLDIIGAAGQADQMLAMYREMRASGHRPDV
FVLNIMLAHAGGTDSCSVAEPVWGELQQYDKEADEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf