mRNA_4111 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348144
Unique NamemRNA_4111
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348144 vs. uniprot
Match: A0A836CGW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW7_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.340e-87
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MLLSARIRQLGIGSRVLAAGLKSGSGGGVPNALHFTTAISACAAAGSSASASDIWRLMLSQDKPAQRWAALLDIIGAAGQADQMLAMYREMRASGHRPDVFVLNIMLAHAGGTDSCSVAEPVWGELQQYDKEADEA 408
            MLLSARIRQLGIGSRVLAAGLKSGSGGGVPNALHFTTAISACAAAGSSASASDIWRLMLSQDKPAQRWAALLDIIGAAGQADQMLAMYREMRASGHRPDVFVLNIMLAHAGGTDSCSVAEPVWGELQQYDKEADEA
Sbjct:    1 MLLSARIRQLGIGSRVLAAGLKSGSGGGVPNALHFTTAISACAAAGSSASASDIWRLMLSQDKPAQRWAALLDIIGAAGQADQMLAMYREMRASGHRPDVFVLNIMLAHAGGTDSCSVAEPVWGELQQYDKEADEA 136
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BLAST of jgi.p|Trimin1|348144 vs. uniprot
Match: A0A836CHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.390e-8
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  235 GQADQMLAMYREMRASGHRPDVFVLNIMLAHAGGTDSCSVAEPVWGELQ 381
            G+ D+MLA+Y+ MRASGH PDV  +N MLAHAG   +  VAE +W EL+
Sbjct:  812 GRVDEMLALYKNMRASGHEPDVIAINDMLAHAGSAGNRDVAEALWRELR 860
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348144 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CGW7_9STRA1.340e-87100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHU7_9STRA1.390e-857.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:599404..601383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348144|estExt_Genemark1.C_Ctg_200068
Hectar predicted targeting categorymitochondrion
TranscriptId348466
TrackFilteredModels1
ProteinId348144
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348144gene_4111Tribonema minus UTEX_B_3156 geneContig_20 599404..601383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348144Trimin1|348144|estExt_Genemark1.C_Ctg_200068Tribonema minus UTEX_B_3156 polypeptideContig_20 599404..600456 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4111_1exon_4111_1Tribonema minus UTEX_B_3156 exonContig_20 599404..599473 +
exon_4111_2exon_4111_2Tribonema minus UTEX_B_3156 exonContig_20 599567..599679 +
exon_4111_3exon_4111_3Tribonema minus UTEX_B_3156 exonContig_20 600229..600483 +
exon_4111_4exon_4111_4Tribonema minus UTEX_B_3156 exonContig_20 601265..601383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4111CDS_4111Tribonema minus UTEX_B_3156 CDSContig_20 599404..599473 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4111UTR3_4111Tribonema minus UTEX_B_3156 three_prime_UTRContig_20 600457..600483 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4111 ID=mRNA_4111|Name=jgi.p|Trimin1|348144|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=557bp|location=Sequence derived from alignment at Contig_20:599404..601383+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTGTCTGCCAGGATACGCCAGTTGGGCATCGGATCGCGCGTGCT
GGCGGCCGGCTTGAAGAGCGGCAGCGGAGGCGGCGTGCCTAATGCCCTGC
ACTTCACCACTGCCATCAGCGCATGTGCGGCGGCGGGTTCCTCGGCCAGC
GCCTCCGACATCTGGCGGCTGATGCTGAGCCAGGACAAGCCGGCGCAGCG
CTGGGCAGCGCTTCTCGACATCATTGGCGCAGCCGGCCAGGCGGACCAGA
TGCTGGCAATGTACAGGGAGATGCGCGCGAGCGGGCACCGGCCTGACGTG
TTCGTCCTGAACATTATGCTAGCCCACGCTGGCGGCACGGACAGTTGCAG
CGTTGCCGAGCCCGTATGGGGGGAGCTGCAGCAATATGACAAGGAGGCGG
ACGAGGCATAACTGATTCAACGGGAGGGGGACCTCTGGATGGCCCCTGGG
CGTACAACCACTCATTTCAGGCGCGGCTCAGGCCGCTACGTATTCAACGC
GCTGTATGGGTGTGCCAAGAGGATGCAAGCAGGCGCCAGGTGTTGCTGCA
CATCATT
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protein sequence of jgi.p|Trimin1|348144

>Trimin1|348144|estExt_Genemark1.C_Ctg_200068 ID=Trimin1|348144|estExt_Genemark1.C_Ctg_200068|Name=jgi.p|Trimin1|348144|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp
MLLSARIRQLGIGSRVLAAGLKSGSGGGVPNALHFTTAISACAAAGSSAS
ASDIWRLMLSQDKPAQRWAALLDIIGAAGQADQMLAMYREMRASGHRPDV
FVLNIMLAHAGGTDSCSVAEPVWGELQQYDKEADEA*
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mRNA from alignment at Contig_20:599404..601383+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4111 ID=mRNA_4111|Name=jgi.p|Trimin1|348144|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1980bp|location=Sequence derived from alignment at Contig_20:599404..601383+ (Tribonema minus UTEX_B_3156 )
ATGTTGTTGTCTGCCAGGATACGCCAGTTGGGCATCGGATCGCGCGTGCT
GGCGGCCGGCTTGAAGAGCGGTGCAGCGCCGCGAGGAGTCATTTAACAGC
CACGAGCAGTATGGGCCGCGAGAAGGTTCTCCAATGCAGATGCTCGCGAT
CCTGCGCCGGCAGGCAGCGGAGGCGGCGTGCCTAATGCCCTGCACTTCAC
CACTGCCATCAGCGCATGTGCGGCGGCGGGTTCCTCGGCCAGCGCCTCCG
ACATCTGGCGGCTGATGCTGAGCCAGGTATCCCGATGACGCAACAATAAT
TCAGTTCAGAGGCCTGGGCAAATGCAGCAGCACACAAGGCTTGAAGCGGT
AGATAATCACGAATGCTTACGCGCACCCTACTGCCTCGATCTTGTGTGAC
TTTACTCAGGTCATGAAAAGCAGGCGCGTGTGTCGTTGTTACATGGACAT
TTGACTAGCTGTTGTCTGCCATCTGGTTGAGATGCTTTGGCGCTGGACTC
CCATTTTGACTACAAGCCTATCAGAGGCGCAATTTCATTTGTCGTTTCGC
ACACGCAGTCAAAGCGCTGTCGCAGGTGCAATATGAAAAGCTTCATTGTA
CTATCTTCTTCTGCACGCAGGCTTTTTCTTCTGTCGCCAGCGCTTGGCCC
CCTGTATCATGTGAACCGTGGCCTCCGCAGCATCTGTGAACTCGCTATGC
AGCACTGGAAGAGCTAGAGACATGTACGGCTCGTGTCAACCTTTCAACTT
CAGCTTCTCAAATTCAACTTTTCAACTTCAACTTTGACTGTGATGCGCGT
GTCGCTGGCGCGCCGTATGCTGCAGGACAAGCCGGCGCAGCGCTGGGCAG
CGCTTCTCGACATCATTGGCGCAGCCGGCCAGGCGGACCAGATGCTGGCA
ATGTACAGGGAGATGCGCGCGAGCGGGCACCGGCCTGACGTGTTCGTCCT
GAACATTATGCTAGCCCACGCTGGCGGCACGGACAGTTGCAGCGTTGCCG
AGCCCGTATGGGGGGAGCTGCAGCAATATGACAAGGAGGCGGACGAGGCA
TAACTGATTCAACGGGAGGGGGACCTCTGGGTGAGAGTGCCTGCCTGAAC
TGCTGGTGAACTGCTTCTCTTCCCTCGTCACTCCGCACTGAGGGTCGGGG
TTAAGATTGGGGTTAGGGTTAGGGTTAGGGTTAGGATTGGGTTAGGGTTA
GGATTAGGGTTAGGGTTAGGGTTAGGATATGGTGCACCACATGATGCTGA
AACCTTGCAGCGAAGCTCTATTTACGTGCACACACCGCAGGCGGCTCAAG
CTCAATGGCAGGTCAAATCATTCAGCTGTCGAACTAGTCTAGAGCAAAAA
GTGCCAGTATGTAGGCCACTTCATATTTGGACTCCACTGTATAGCGAAGT
TACTGTGTACACATACACAAATACACTTCGCATTGTTGTTCAGTTGTGCT
CGGGGGCGTCAGCTGTAGCACCATGTTCCACCATCTGTGCGACAGAAACA
GTGATCGCTGTAATCAACCAGTTTGTATGTGATCAAGCAAGTCCTACATG
CCTGGGCCTACAATGCCCCCACTTGGCTTGACATTCGGGGAGCTGGCCAT
GTCCTACGTACACATAGCGTCCATAGTCTTCACGCATGGACACATATGCT
AGTGCCACCCCCCCCAGGGGGGGGGGGGGGGGGGGGGGTCAAGATCTGTA
GCACGTCACGCACCCGCACGCTACAGACCGCAAAAGGCGGCCCCTCTTCG
CTACGTTTCGTTCTGCACTGCAGGCAAGGAATGTGACGTGGGTGGAGATG
TATTTACTTCATGTTGTTGTTGCGTCTTTGCATGCCTGCTTCCATTGCCC
CTGCGCCACAGATGGCCCCTGGGCGTACAACCACTCATTTCAGGCGCGGC
TCAGGCCGCTACGTATTCAACGCGCTGTATGGGTGTGCCAAGAGGATGCA
AGCAGGCGCCAGGTGTTGCTGCACATCATT
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Coding sequence (CDS) from alignment at Contig_20:599404..601383+

>mRNA_4111 ID=mRNA_4111|Name=jgi.p|Trimin1|348144|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_20:599404..601383+ (Tribonema minus UTEX_B_3156 )
ATGTTGTTGTCTGCCAGGATACGCCAGTTGGGCATCGGATCGCGCGTGCT
GGCGGCCGGCTTGAAGAGCGGCAGCGGAGGCGGCGTGCCTAATGCCCTGC
ACTTCACCACTGCCATCAGCGCATGTGCGGCGGCGGGTTCCTCGGCCAGC
GCCTCCGACATCTGGCGGCTGATGCTGAGCCAGGACAAGCCGGCGCAGCG
CTGGGCAGCGCTTCTCGACATCATTGGCGCAGCCGGCCAGGCGGACCAGA
TGCTGGCAATGTACAGGGAGATGCGCGCGAGCGGGCACCGGCCTGACGTG
TTCGTCCTGAACATTATGCTAGCCCACGCTGGCGGCACGGACAGTTGCAG
CGTTGCCGAGCCCGTATGGGGGGAGCTGCAGCAATATGACAAGGAGGCGG
ACGAGGCATAA
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