mRNA_4048 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136713
Unique NamemRNA_4048
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A836CI30_9STRA (XPG N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI30_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.360e-76
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK 405
            MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK
Sbjct:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK 135          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A6H5KXJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ8_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 7.110e-45
Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMR-QDAEVNVTKQAQRILTAQLKR 348
            MG+ NLW+LLSP GR +SIETL  KTLAVDVSIWL +FIK MR DDG V+KNAHIIGTLRRV+KLL+HRIRPVFVFDGGAP+LK +TL ARR++R +  + +V K AQRIL +QLK+
Sbjct:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRLEGTDCSVRKTAQRILASQLKK 117          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: D7FZY4_ECTSI (DNA repair enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY4_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 7.130e-45
Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDA-EVNVTKQAQRILTAQLKR 348
            MG+ NLW+LLSP GR +SIETL  KTLAVDVSIWL +FIK MR DDG V+KNAHIIGTLRRV+KLL+HRIRPVFVFDGGAP+LK +TL ARR++R +  + +V K AQRIL +QLK+
Sbjct:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRSEGTDSSVRKTAQRILASQLKK 117          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: W7TX36_9STRA (Dna repair enzyme n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX36_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.320e-44
Identity = 75/116 (64.66%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 348
            MGV+NLW+LL P GRR+++E+LERKTLA+DVSIWL +FIK MR D+G V+KNAHIIGT RR++KLL++RIRP+FVFDGG P +K +T+ +R+R R+D E +V K AQR+L AQLK+
Sbjct:    1 MGVHNLWQLLLPVGRRVNVESLERKTLAIDVSIWLTQFIKAMRDDEGKVVKNAHIIGTFRRIVKLLFYRIRPIFVFDGGTPEIKRRTVMSRKRRREDQETSVRKTAQRLLLAQLKK 116          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A7R9YE64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE64_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.030e-43
Identity = 74/116 (63.79%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 348
            MGV+ LW+LL P GRR SIE+L  KTLA+D+SIWL +F+K MR DDG ++KNAH++GTLRR+ KLL+HRIRPV VFDG AP+LK +TL  RR MR+  E +VTK AQR+L AQL++
Sbjct:    1 MGVHGLWRLLLPVGRRASIESLGGKTLAIDMSIWLTQFVKAMRDDDGRLLKNAHLLGTLRRLCKLLFHRIRPVMVFDGSAPTLKRRTLEKRRAMRERQEASVTKTAQRLLLAQLRK 116          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: UPI0010366706 (DNA repair protein UVH3-like isoform X2 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010366706)

HSP 1 Score: 137 bits (345), Expect = 1.100e-38
Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLK 345
            MGV+ LW+LL+P GRR+S+ETL  K LA+D SIW+++F+K MR D G ++KNAHI+G  RR+ KLL+ R +PVFVFDGG P+LK +T+ ARRR R++A+  + K A+++L   L+
Sbjct:    1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHLR 115          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: D8QQY4_SELML (XPGN domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QQY4_SELML)

HSP 1 Score: 134 bits (337), Expect = 3.580e-38
Identity = 60/110 (54.55%), Postives = 85/110 (77.27%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRIL 330
            MGV+ LW+LL+P GRR+S+E L  K LA+D SIW+++F+K MR D G VM+NAH++G  RR+ KLL+ R++PVFVFDGG P LK +T+ ARRR R+ A+  + K A+++L
Sbjct:    1 MGVHGLWELLAPVGRRVSVELLGNKKLAIDASIWIIQFLKAMRDDRGEVMRNAHLLGFFRRICKLLFLRVKPVFVFDGGTPFLKRRTVIARRRQREQAQSKIRKTAEKLL 110          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A482SEU7_9ARCH (XPGN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEU7_9ARCH)

HSP 1 Score: 133 bits (335), Expect = 4.720e-38
Identity = 60/92 (65.22%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARR 276
            MGV +LW+LL+P GRR+SIETLE K LA+D+SIWL +FIK MR ++G ++KNAHIIGTLRR++KLL+H I+PVFVFDG  P LKE+ + +RR
Sbjct:    1 MGVKDLWQLLAPMGRRVSIETLEGKALAIDMSIWLTQFIKAMRDEEGNMIKNAHIIGTLRRILKLLFHGIKPVFVFDGRTPQLKERVIESRR 92          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A5A8EMW8_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EMW8_CAFRO)

HSP 1 Score: 146 bits (368), Expect = 5.160e-38
Identity = 67/116 (57.76%), Postives = 90/116 (77.59%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 348
            MGV NLWKLL P GRR++IETL  + LAVDVSIWL +F+K MR D+G ++KNAH++GT RR+ KL++HRIRPVFVFDGG P+LK +T+  RR+ RQD+     + AQR+L   +++
Sbjct:    1 MGVLNLWKLLQPCGRRVAIETLRGEVLAVDVSIWLTQFVKAMRDDEGMMLKNAHVVGTFRRICKLMFHRIRPVFVFDGGTPALKRKTVLLRRQRRQDSAQATERAAQRLLLNHIRQ 116          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A4S4CV51_CAMSI (XPGN domain-containing protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4CV51_CAMSI)

HSP 1 Score: 137 bits (345), Expect = 5.690e-38
Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLK 345
            MGV+ LW+LL+P GRR+S+ETL  K LA+D SIW+++F+K MR D G ++KNAHI+G  RR+ KLL+ R +PVFVFDGG P+LK +T+ ARRR R++A+  + K A+++L   L+
Sbjct:    1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHLR 115          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI30_9STRA1.360e-76100.00XPG N-terminal domain-containing protein (Fragment... [more]
A0A6H5KXJ8_9PHAE7.110e-4570.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY4_ECTSI7.130e-4570.94DNA repair enzyme n=1 Tax=Ectocarpus siliculosus T... [more]
W7TX36_9STRA1.320e-4464.66Dna repair enzyme n=2 Tax=Nannochloropsis gaditana... [more]
A0A7R9YE64_9STRA3.030e-4363.79Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
UPI00103667061.100e-3853.91DNA repair protein UVH3-like isoform X2 n=1 Tax=Ca... [more]
D8QQY4_SELML3.580e-3854.55XPGN domain-containing protein n=1 Tax=Selaginella... [more]
A0A482SEU7_9ARCH4.720e-3865.22XPGN domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A5A8EMW8_CAFRO5.160e-3857.76Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A4S4CV51_CAMSI5.690e-3853.91XPGN domain-containing protein n=2 Tax=Camellia si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:105960..106364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136713|gw1.20.92.1
BRITEko00000,ko00001,ko03400
KEGG Pathwayko03420,map03420
KEGG koko:K10846
GOsGO:0000075,GO:0000077,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0008821,GO:0009987,GO:0012501,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0023052,GO:0031570,GO:0033554,GO:0034641,GO:0035556,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051716,GO:0051726,GO:0061062,GO:0061064,GO:0065007,GO:0071704,GO:0072395,GO:0072401,GO:0072422,GO:0090304,GO:0090305,GO:0097190,GO:0097193,GO:0140097,GO:1901360,GO:2000026
Preferred namegen-1
Descriptionnucleotide-excision repair, DNA incision, 3'-to lesion
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0258@1|root,KOG2520@2759|Eukaryota
Evalue1.17e-45
Seed ortholog2880.D7FZY4
Hectar predicted targeting categoryother localisation
TranscriptId137035
TrackFilteredModels1
ProteinId136713
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136713gene_4048Tribonema minus UTEX_B_3156 geneContig_20 105960..106364 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4048_1exon_4048_1Tribonema minus UTEX_B_3156 exonContig_20 105960..106364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4048CDS_4048Tribonema minus UTEX_B_3156 CDSContig_20 105960..106364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136713Trimin1|136713|gw1.20.92.1Tribonema minus UTEX_B_3156 polypeptideContig_20 105960..106364 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4048 ID=mRNA_4048|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=405bp|location=Sequence derived from alignment at Contig_20:105960..106364+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTAAACAATCTCTGGAAGCTGCTGTCTCCGGCAGGTCGCCGCAT
CAGCATCGAGACCCTGGAGAGAAAAACTCTGGCGGTGGATGTCAGCATCT
GGCTCGTCAAGTTCATCAAGACCATGCGTCAGGACGACGGCGCTGTCATG
AAGAATGCCCACATCATCGGCACCCTCCGCCGCGTCATCAAGCTGCTGTA
CCATCGCATCAGGCCTGTCTTTGTGTTCGACGGCGGCGCCCCGTCTCTCA
AGGAGCAGACCCTGCGTGCCAGGCGGCGGATGCGCCAGGACGCGGAGGTC
AATGTCACCAAGCAGGCCCAGCGGATCCTGACTGCGCAGCTGAAGCGCAT
CGCCACCGCCAACGCAAAAGCCAACGCAGCAGCAGCAGCTGCAGCAACAT
CCAAG
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protein sequence of jgi.p|Trimin1|136713

>Trimin1|136713|gw1.20.92.1 ID=Trimin1|136713|gw1.20.92.1|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVM
KNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEV
NVTKQAQRILTAQLKRIATANAKANAAAAAAATSK
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mRNA from alignment at Contig_20:105960..106364+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4048 ID=mRNA_4048|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=405bp|location=Sequence derived from alignment at Contig_20:105960..106364+ (Tribonema minus UTEX_B_3156 )
ATGGGAGTAAACAATCTCTGGAAGCTGCTGTCTCCGGCAGGTCGCCGCAT CAGCATCGAGACCCTGGAGAGAAAAACTCTGGCGGTGGATGTCAGCATCT GGCTCGTCAAGTTCATCAAGACCATGCGTCAGGACGACGGCGCTGTCATG AAGAATGCCCACATCATCGGCACCCTCCGCCGCGTCATCAAGCTGCTGTA CCATCGCATCAGGCCTGTCTTTGTGTTCGACGGCGGCGCCCCGTCTCTCA AGGAGCAGACCCTGCGTGCCAGGCGGCGGATGCGCCAGGACGCGGAGGTC AATGTCACCAAGCAGGCCCAGCGGATCCTGACTGCGCAGCTGAAGCGCAT CGCCACCGCCAACGCAAAAGCCAACGCAGCAGCAGCAGCTGCAGCAACAT CCAAG
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Coding sequence (CDS) from alignment at Contig_20:105960..106364+

>mRNA_4048 ID=mRNA_4048|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_20:105960..106364+ (Tribonema minus UTEX_B_3156 )
ATGGGAGTAAACAATCTCTGGAAGCTGCTGTCTCCGGCAGGTCGCCGCAT
CAGCATCGAGACCCTGGAGAGAAAAACTCTGGCGGTGGATGTCAGCATCT
GGCTCGTCAAGTTCATCAAGACCATGCGTCAGGACGACGGCGCTGTCATG
AAGAATGCCCACATCATCGGCACCCTCCGCCGCGTCATCAAGCTGCTGTA
CCATCGCATCAGGCCTGTCTTTGTGTTCGACGGCGGCGCCCCGTCTCTCA
AGGAGCAGACCCTGCGTGCCAGGCGGCGGATGCGCCAGGACGCGGAGGTC
AATGTCACCAAGCAGGCCCAGCGGATCCTGACTGCGCAGCTGAAGCGCAT
CGCCACCGCCAACGCAAAAGCCAACGCAGCAGCAGCAGCTGCAGCAACAT
CCAAG
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