mRNA_4048 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A836CI30_9STRA (XPG N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI30_9STRA) HSP 1 Score: 232 bits (591), Expect = 1.360e-76 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK 405 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK Sbjct: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK 135
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A6H5KXJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ8_9PHAE) HSP 1 Score: 166 bits (419), Expect = 7.110e-45 Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMR-QDAEVNVTKQAQRILTAQLKR 348 MG+ NLW+LLSP GR +SIETL KTLAVDVSIWL +FIK MR DDG V+KNAHIIGTLRRV+KLL+HRIRPVFVFDGGAP+LK +TL ARR++R + + +V K AQRIL +QLK+ Sbjct: 1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRLEGTDCSVRKTAQRILASQLKK 117
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: D7FZY4_ECTSI (DNA repair enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY4_ECTSI) HSP 1 Score: 166 bits (419), Expect = 7.130e-45 Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDA-EVNVTKQAQRILTAQLKR 348 MG+ NLW+LLSP GR +SIETL KTLAVDVSIWL +FIK MR DDG V+KNAHIIGTLRRV+KLL+HRIRPVFVFDGGAP+LK +TL ARR++R + + +V K AQRIL +QLK+ Sbjct: 1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRSEGTDSSVRKTAQRILASQLKK 117
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: W7TX36_9STRA (Dna repair enzyme n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX36_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.320e-44 Identity = 75/116 (64.66%), Postives = 99/116 (85.34%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 348 MGV+NLW+LL P GRR+++E+LERKTLA+DVSIWL +FIK MR D+G V+KNAHIIGT RR++KLL++RIRP+FVFDGG P +K +T+ +R+R R+D E +V K AQR+L AQLK+ Sbjct: 1 MGVHNLWQLLLPVGRRVNVESLERKTLAIDVSIWLTQFIKAMRDDEGKVVKNAHIIGTFRRIVKLLFYRIRPIFVFDGGTPEIKRRTVMSRKRRREDQETSVRKTAQRLLLAQLKK 116
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A7R9YE64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE64_9STRA) HSP 1 Score: 155 bits (391), Expect = 3.030e-43 Identity = 74/116 (63.79%), Postives = 94/116 (81.03%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 348 MGV+ LW+LL P GRR SIE+L KTLA+D+SIWL +F+K MR DDG ++KNAH++GTLRR+ KLL+HRIRPV VFDG AP+LK +TL RR MR+ E +VTK AQR+L AQL++ Sbjct: 1 MGVHGLWRLLLPVGRRASIESLGGKTLAIDMSIWLTQFVKAMRDDDGRLLKNAHLLGTLRRLCKLLFHRIRPVMVFDGSAPTLKRRTLEKRRAMRERQEASVTKTAQRLLLAQLRK 116
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: UPI0010366706 (DNA repair protein UVH3-like isoform X2 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010366706) HSP 1 Score: 137 bits (345), Expect = 1.100e-38 Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLK 345 MGV+ LW+LL+P GRR+S+ETL K LA+D SIW+++F+K MR D G ++KNAHI+G RR+ KLL+ R +PVFVFDGG P+LK +T+ ARRR R++A+ + K A+++L L+ Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHLR 115
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: D8QQY4_SELML (XPGN domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QQY4_SELML) HSP 1 Score: 134 bits (337), Expect = 3.580e-38 Identity = 60/110 (54.55%), Postives = 85/110 (77.27%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRIL 330 MGV+ LW+LL+P GRR+S+E L K LA+D SIW+++F+K MR D G VM+NAH++G RR+ KLL+ R++PVFVFDGG P LK +T+ ARRR R+ A+ + K A+++L Sbjct: 1 MGVHGLWELLAPVGRRVSVELLGNKKLAIDASIWIIQFLKAMRDDRGEVMRNAHLLGFFRRICKLLFLRVKPVFVFDGGTPFLKRRTVIARRRQREQAQSKIRKTAEKLL 110
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A482SEU7_9ARCH (XPGN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEU7_9ARCH) HSP 1 Score: 133 bits (335), Expect = 4.720e-38 Identity = 60/92 (65.22%), Postives = 78/92 (84.78%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARR 276 MGV +LW+LL+P GRR+SIETLE K LA+D+SIWL +FIK MR ++G ++KNAHIIGTLRR++KLL+H I+PVFVFDG P LKE+ + +RR Sbjct: 1 MGVKDLWQLLAPMGRRVSIETLEGKALAIDMSIWLTQFIKAMRDEEGNMIKNAHIIGTLRRILKLLFHGIKPVFVFDGRTPQLKERVIESRR 92
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A5A8EMW8_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EMW8_CAFRO) HSP 1 Score: 146 bits (368), Expect = 5.160e-38 Identity = 67/116 (57.76%), Postives = 90/116 (77.59%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 348 MGV NLWKLL P GRR++IETL + LAVDVSIWL +F+K MR D+G ++KNAH++GT RR+ KL++HRIRPVFVFDGG P+LK +T+ RR+ RQD+ + AQR+L +++ Sbjct: 1 MGVLNLWKLLQPCGRRVAIETLRGEVLAVDVSIWLTQFVKAMRDDEGMMLKNAHVVGTFRRICKLMFHRIRPVFVFDGGTPALKRKTVLLRRQRRQDSAQATERAAQRLLLNHIRQ 116
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A4S4CV51_CAMSI (XPGN domain-containing protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4CV51_CAMSI) HSP 1 Score: 137 bits (345), Expect = 5.690e-38 Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 1 Query: 1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLK 345 MGV+ LW+LL+P GRR+S+ETL K LA+D SIW+++F+K MR D G ++KNAHI+G RR+ KLL+ R +PVFVFDGG P+LK +T+ ARRR R++A+ + K A+++L L+ Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHLR 115 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4048 ID=mRNA_4048|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=405bp|location=Sequence derived from alignment at Contig_20:105960..106364+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGAGTAAACAATCTCTGGAAGCTGCTGTCTCCGGCAGGTCGCCGCATback to top protein sequence of jgi.p|Trimin1|136713 >Trimin1|136713|gw1.20.92.1 ID=Trimin1|136713|gw1.20.92.1|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMback to top mRNA from alignment at Contig_20:105960..106364+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4048 ID=mRNA_4048|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=405bp|location=Sequence derived from alignment at Contig_20:105960..106364+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:105960..106364+ >mRNA_4048 ID=mRNA_4048|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_20:105960..106364+ (Tribonema minus UTEX_B_3156 )back to top |