mRNA_627 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157061
Unique NamemRNA_627
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157061 vs. uniprot
Match: A0A836CI12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI12_9STRA)

HSP 1 Score: 213 bits (541), Expect = 7.150e-67
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1 
Query:    1 MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIERLPPELGHLTLLRDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLEELDCQGNARLDMVPAPFRGERAGACAHRGDLAQCAARDMDAEHETLDK 606
            MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIERLPPELGHLTLLRDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLEELDCQGNARLDMVPAPFRGERAGACAHRGDLAQCAARDMDAEHETLDK
Sbjct:    1 MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIERLPPELGHLTLLRDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLEELDCQGNARLDMVPAPFRGERAGACAHRGDLAQCAARDMDAEHETLDK 202
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BLAST of jgi.p|Trimin1|157061 vs. uniprot
Match: A0A7S2V5X2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5X2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.810e-19
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIERLPPELGHLTLLRDL 192
            MEE+D+LI HPD  GCLDL HR WV LD  +WT + EL +LNI+FNNI  +PP +G L LLR+L
Sbjct:    1 MEEFDDLIQHPDDKGCLDLAHRGWVTLDDAVWTMNYELFILNISFNNITAVPPRIGDLNLLREL 64
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BLAST of jgi.p|Trimin1|157061 vs. uniprot
Match: A0A7R9YGJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGJ9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.610e-16
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIERLPPELGHLTLLRDL 192
            MEE+D+LIP PD  G  DL HR W  +DSV+WT   ELL L+++FN IE LPP++G L LLR L
Sbjct:    1 MEEFDDLIPQPDADGSCDLAHRGWKVVDSVIWTLGAELLHLDLSFNRIEALPPDVGGLFLLRTL 64
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BLAST of jgi.p|Trimin1|157061 vs. uniprot
Match: A0A7S3GQP2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQP2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.190e-11
Identity = 27/64 (42.19%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIERLPPELGHLTLLRDL 192
            MEE DEL+P+ D  G L++++R+WV LD ++WT S +++ L++++N+I  +PP++G L ++R+L
Sbjct:    1 MEEDDELVPNADDRGFLNISNRAWVNLDPIIWTMSLKIVKLDMSYNHIVEIPPQIGELVVMREL 64
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BLAST of jgi.p|Trimin1|157061 vs. uniprot
Match: D7FT92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT92_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.110e-10
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIERLPPELGHLTLLRDL 192
            MEE DEL+PHPD  G L+LT R              EL+VLN++FNNIE LPPELG L LL++L
Sbjct:    1 MEEVDELVPHPDSNGLLNLTKR--------------ELIVLNVSFNNIEYLPPELGDLVLLKEL 50
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157061 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CI12_9STRA7.150e-67100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V5X2_9STRA1.810e-1960.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YGJ9_9STRA6.610e-1657.81Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3GQP2_9STRA1.190e-1142.19Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
D7FT92_ECTSI2.110e-1054.69Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:886927..887726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157061|e_gw1.2.76.1
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04090
KEGG ModuleM00296
KEGG Pathwayko03410,ko04512,ko04611,ko04640,map03410,map04512,map04611,map04640
KEGG koko:K06262,ko:K10771
EC4.2.99.18
GOsGO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003691,GO:0003712,GO:0003713,GO:0003714,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004523,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0004540,GO:0004844,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005813,GO:0005815,GO:0005840,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006286,GO:0006304,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008081,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010941,GO:0012505,GO:0015630,GO:0016043,GO:0016070,GO:0016311,GO:0016491,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016798,GO:0016799,GO:0016890,GO:0016891,GO:0016893,GO:0016895,GO:0019104,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033554,GO:0034641,GO:0035510,GO:0042162,GO:0042578,GO:0042592,GO:0042981,GO:0043067,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043412,GO:0043487,GO:0043488,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044728,GO:0045934,GO:0045935,GO:0046483,GO:0046872,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0055114,GO:0060249,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0080111,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097506,GO:0097698,GO:0098501,GO:0098502,GO:0098687,GO:0140097,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1990904,GO:2001141
Preferred nameGP1BB
Descriptionprocollagen-lysine 5-dioxygenase activity
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0708@1|root,COG4886@1|root,KOG1971@1|root,KOG0619@2759|Eukaryota,KOG1294@2759|Eukaryota,KOG1971@2759|Eukaryota
Evalue8.66e-14
Seed ortholog44056.XP_009037447.1
Hectar predicted targeting categoryother localisation
TranscriptId157383
TrackFilteredModels1
ProteinId157061
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157061gene_627Tribonema minus UTEX_B_3156 geneContig_2 886927..887726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157061Trimin1|157061|e_gw1.2.76.1Tribonema minus UTEX_B_3156 polypeptideContig_2 886927..887726 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_627_2exon_627_2Tribonema minus UTEX_B_3156 exonContig_2 886927..887304 -
exon_627_1exon_627_1Tribonema minus UTEX_B_3156 exonContig_2 887496..887726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_627CDS_627Tribonema minus UTEX_B_3156 CDSContig_2 887496..887726 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_627 ID=mRNA_627|Name=jgi.p|Trimin1|157061|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=609bp|location=Sequence derived from alignment at Contig_2:886927..887726- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAATACGACGAACTCATCCCGCATCCAGACAAAGCGGGATGCCT
GGACCTGACGCACCGCTCATGGGTAGAGCTGGACAGCGTGCTGTGGACCT
TCAGCAAGGAGCTGTTGGTGTTGAACATCGCCTTCAATAATATCGAGCGG
CTGCCGCCAGAGCTGGGGCATCTGACGCTGCTCCGGGACCTCAACTGCTC
GTGCAATAAGCTGTCCAGTCTGCCAGCAGAGATAGGCAAGTGCACGCGGC
TGCGCACCCTGAAGGCCAACGGCAACCGCCTGACGGAGATACCGCAGACC
TTGGCGCAATGCGTCCTGCTGGACACCCTGGTGCTGAGCGAGAACAAGCT
GCGCGGCGTGCCCGCCGCCCTGGGGTCCCTGCAAGGGCTGAGGGTGGTGC
GGCTCGGCAACAACGATCTTAACTACCTGCCGCACCAGATAGGCACCATG
CCGTCCCTGGAGGAGCTGGACTGTCAGGGCAACGCGCGCCTCGACATGGT
GCCTGCGCCATTCAGAGGTGAGCGCGCCGGAGCGTGTGCGCACAGGGGTG
ACCTGGCGCAGTGTGCAGCTCGCGATATGGACGCCGAGCACGAAACCCTG
GACAAGTGA
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protein sequence of jgi.p|Trimin1|157061

>Trimin1|157061|e_gw1.2.76.1 ID=Trimin1|157061|e_gw1.2.76.1|Name=jgi.p|Trimin1|157061|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp
MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIER
LPPELGHLTLLRDLNCSCNKLSSLPAEIGKCTRLRTLKANGNRLTEIPQT
LAQCVLLDTLVLSENKLRGVPAALGSLQGLRVVRLGNNDLNYLPHQIGTM
PSLEELDCQGNARLDMVPAPFRGERAGACAHRGDLAQCAARDMDAEHETL
DK*
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mRNA from alignment at Contig_2:886927..887726-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_627 ID=mRNA_627|Name=jgi.p|Trimin1|157061|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=800bp|location=Sequence derived from alignment at Contig_2:886927..887726- (Tribonema minus UTEX_B_3156 )
ATGGAGGAATACGACGAACTCATCCCGCATCCAGACAAAGCGGGATGCCT
GGACCTGACGCACCGCTCATGGGTAGAGCTGGACAGCGTGCTGTGGACCT
TCAGCAAGGAGCTGTTGGTGTTGAACATCGCCTTCAATAATATCGAGCGG
CTGCCGCCAGAGCTGGGGCATCTGACGCTGCTCCGGGACCTCAACTGCTC
GTGCAATAAGCTGTCCAGTCTGCCAGCAGAGGTGAGCTCGGAAATCGTCA
TGTGAGGGCGTCCACTGAGTCGATGCAAGCGCAGCAGGCGTGGTCGATGA
GCATCAGTCCCATGAGCAGATATGTGTGTAGTCGGTGGTCTTGCTCGTCA
ACTGCTCCTTTCAAATGCCACAAAAGGAACAATCTGAAGCTGCAAACTTG
CGGTTGCGCTTGCGCCTGGCAGATAGGCAAGTGCACGCGGCTGCGCACCC
TGAAGGCCAACGGCAACCGCCTGACGGAGATACCGCAGACCTTGGCGCAA
TGCGTCCTGCTGGACACCCTGGTGCTGAGCGAGAACAAGCTGCGCGGCGT
GCCCGCCGCCCTGGGGTCCCTGCAAGGGCTGAGGGTGGTGCGGCTCGGCA
ACAACGATCTTAACTACCTGCCGCACCAGATAGGCACCATGCCGTCCCTG
GAGGAGCTGGACTGTCAGGGCAACGCGCGCCTCGACATGGTGCCTGCGCC
ATTCAGAGGTGAGCGCGCCGGAGCGTGTGCGCACAGGGGTGACCTGGCGC
AGTGTGCAGCTCGCGATATGGACGCCGAGCACGAAACCCTGGACAAGTGA
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Coding sequence (CDS) from alignment at Contig_2:886927..887726-

>mRNA_627 ID=mRNA_627|Name=jgi.p|Trimin1|157061|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_2:886927..887726- (Tribonema minus UTEX_B_3156 )
ATGGAGGAATACGACGAACTCATCCCGCATCCAGACAAAGCGGGATGCCT
GGACCTGACGCACCGCTCATGGGTAGAGCTGGACAGCGTGCTGTGGACCT
TCAGCAAGGAGCTGTTGGTGTTGAACATCGCCTTCAATAATATCGAGCGG
CTGCCGCCAGAGCTGGGGCATCTGACGCTGCTCCGGGACCTCAACTGCTC
GTGCAATAAGCTGTCCAGTCTGCCAGCAGAGATAGGCAAGTGCACGCGGC
TGCGCACCCTGAAGGCCAACGGCAACCGCCTGACGGAGATACCGCAGACC
TTGGCGCAATGCGTCCTGCTGGACACCCTGGTGCTGAGCGAGAACAAGCT
GCGCGGCGTGCCCGCCGCCCTGGGGTCCCTGCAAGGGCTGAGGGTGGTGC
GGCTCGGCAACAACGATCTTAACTACCTGCCGCACCAGATAGGCACCATG
CCGTCCCTGGAGGAGCTGGACTGTCAGGGCAACGCGCGCCTCGACATGGT
GCCTGCGCCATTCAGAGGTGAGCGCGCCGGAGCGTGTGCGCACAGGGGTG
ACCTGGCGCAGTGTGCAGCTCGCGATATGGACGCCGAGCACGAAACCCTG
GACAAGTGA
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