mRNA_761 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A836CI54_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI54_9STRA) HSP 1 Score: 309 bits (791), Expect = 2.340e-106 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 Query: 1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV 471 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV Sbjct: 1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV 157
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A835Z4I2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I2_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.510e-50 Identity = 86/157 (54.78%), Postives = 112/157 (71.34%), Query Frame = 1 Query: 1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV 471 M ++VLIVDDV FRKLL+KQLERRG+ +IDEA DG+ AL++M+ Y V+MDVMMPRMNGDVC R +REWE + P++LMSADVLS DNDV+ SG Q FFTKP++IVRLGN+LRD+A SS G W + + + D + +++V Sbjct: 424 MRRLKVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSLRDIAAASSKLGSWTQTASNSTGVHTPVDMEEVIDVV 580
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A835ZBI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI1_9STRA) HSP 1 Score: 175 bits (443), Expect = 1.590e-48 Identity = 83/129 (64.34%), Postives = 105/129 (81.40%), Query Frame = 1 Query: 1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSS 387 M+++ VLIVDDV FRKLL+KQLERRGV +IDEA+DG+ AL++MK Y VV+MDVMMPRMNGDVC R +REWE+ P P++LMSADVLS +NDV++SG Q FFTKP++IVRLGN LR++A+ S Sbjct: 529 MANLSVLIVDDVSTFRKLLKKQLERRGVTRIDEAEDGVNALEMMKHTQYSVVLMDVMMPRMNGDVCARELREWEVRRGTPNVPILLMSADVLSDENDVVTSGIVQHFFTKPIDIVRLGNTLRNIAVTES 657
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A1E8CGR6_9GAMM (Histidine kinase n=1 Tax=Pseudohongiella acticola TaxID=1524254 RepID=A0A1E8CGR6_9GAMM) HSP 1 Score: 87.0 bits (214), Expect = 6.160e-17 Identity = 54/150 (36.00%), Postives = 80/150 (53.33%), Query Frame = 1 Query: 4 SHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDED 453 +RVL VDDV +LL+ L + G Q+D A++G QA+ + K TYDV++MDV MP M+G RAIR++E + RP TPVI ++A V+ D F TKPL L + + S G +++ A P + T+ + Sbjct: 642 GRLRVLAVDDVPENLELLQLTLRKNG-HQVDTAENGEQAVALFKQATYDVILMDVQMPVMDGLQATRAIRQYEQQHQRPATPVIALTASVMDRDRQSARDAGMNGFATKPLEWQALNREINHLVTES---GINVELGATPVPEPENTERN 787
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A6C2UB29_9BACT (Sensory/regulatory protein RpfC n=1 Tax=Pontiella desulfatans TaxID=2750659 RepID=A0A6C2UB29_9BACT) HSP 1 Score: 84.7 bits (208), Expect = 3.480e-16 Identity = 44/119 (36.97%), Postives = 74/119 (62.18%), Query Frame = 1 Query: 10 IRVLIVDDVMIFRKLLRKQLERRGVEQIDEA-QDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNAL 363 +RVL+V+D ++ + + + L + G I EA +DG A++++ + +D+V+MDV MP+M+G +AIRE E+A P+ P+I M+A LS D + G + TKP+N+ L NA+ Sbjct: 399 VRVLVVEDNLVNQTVAVRTLHKMGC--IAEASKDGADAIELLANRHFDLVLMDVQMPKMDGLETTKAIREKEVAEALPRLPIIAMTAHALSGDRERCLEGGMDGYITKPINVAELSNAV 515
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: H0J113_9GAMM (Histidine kinase n=1 Tax=Halomonas sp. GFAJ-1 TaxID=1118153 RepID=H0J113_9GAMM) HSP 1 Score: 84.7 bits (208), Expect = 3.980e-16 Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 10 IRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLN 339 + +L+ DDV +LL+ L+RRG Q+D A DG QAL+ + YD+V+MDV MP M+G +AIR WE P+ PVI ++A ++ D + + F TKP++ Sbjct: 778 LHILVADDVPQNVQLLQGMLQRRG-HQVDTATDGKQALERSTAERYDIVLMDVHMPNMDGHTATKAIRSWEQEQGHPRLPVIALTASIMEQDREQAHAAGMDGFATKPID 886
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A354V931_9PROT (Histidine kinase n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354V931_9PROT) HSP 1 Score: 84.0 bits (206), Expect = 7.210e-16 Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 10 IRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRL 351 + VL+VDDV + R+L LE+ G +D A DG+QAL+++K YD+V+MDV MPRMNG AIR + + P++ M+A+ + D + L + + KP +V+L Sbjct: 754 LHVLVVDDVAVNRQLAAAILEKAG-HTVDGAADGLQALEMVKTADYDLVLMDVQMPRMNGIAATAAIRA--LTGTKANVPIVAMTANAMDGDRETLLAAGMNDYIAKPFTLVQL 864
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A7W4W4A7_9GAMM (CheY-like chemotaxis protein n=2 Tax=Litorivivens lipolytica TaxID=1524264 RepID=A0A7W4W4A7_9GAMM) HSP 1 Score: 78.6 bits (192), Expect = 7.790e-16 Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1 Query: 13 RVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNG-DVCVRAIREWEIANLRPKTPVILMSADVLSP-DNDVLSSGAAQQFFTKPLNIVRLGNAL 363 R+LI +D + + +L +QL+R G D A+DG +AL + K + YD+VI D+ MP M+G D+C +AIRE E + RP+T V++++A+ ND+ +SG F TKPL + + AL Sbjct: 4 RILIAEDDEVNQNILMRQLKRFGYS-ADLAEDGSKALALWKEQAYDLVITDLHMPNMDGYDLC-KAIRELEKTDNRPRTAVVMLTANAFGEAQNDIQASGI-DDFLTKPLRLPEIKQAL 119
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A3M2ISZ7_9BACT (Response regulator (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M2ISZ7_9BACT) HSP 1 Score: 80.5 bits (197), Expect = 1.040e-15 Identity = 42/123 (34.15%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 4 SHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDV 372 RVL+ +D + +KL+++ LE+RG+ Q+D G++A++ MK K YD+V+MDV MP M+G R IRE E + TP+I ++A + D + + + +KP+ +L N L ++ Sbjct: 85 GEFRVLVAEDNSVNQKLMQRLLEKRGL-QVDMVATGVEAVEAMKQKEYDLVLMDVQMPEMDGLEATRRIREMEAVTGK-HTPIIALTAYAMKGDREKCLAAGMDGYLSKPIKPAQLENVLENL 205
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A2E5X139_9PROT (Histidine kinase n=1 Tax=Halobacteriovoraceae bacterium TaxID=2026745 RepID=A0A2E5X139_9PROT) HSP 1 Score: 83.2 bits (204), Expect = 1.290e-15 Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 4 SHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNAL 363 S ++VLIVDD + R L++ L++ E I EA DG++ALD MK K +DVV MD+ MPRM+G R+WE N T +I ++A L + D + TKPL L N+L Sbjct: 548 SELKVLIVDDAINNRSLVKAYLKKFPFE-ITEAVDGVEALDKMKEKAFDVVFMDMQMPRMDGYTATEEFRKWESQNRDSCTNIIALTACALKEEKDKSLVSGCDDYLTKPLKKETLINSL 666 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_761 ID=mRNA_761|Name=jgi.p|Trimin1|156960|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_2:1362999..1363472- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCGCACATCAGGGTACTCATTGTTGATGATGTCATGATCTTCAGAAAback to top protein sequence of jgi.p|Trimin1|156960 >Trimin1|156960|e_gw1.2.283.1 ID=Trimin1|156960|e_gw1.2.283.1|Name=jgi.p|Trimin1|156960|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDback to top mRNA from alignment at Contig_2:1362999..1363472- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_761 ID=mRNA_761|Name=jgi.p|Trimin1|156960|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_2:1362999..1363472- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_2:1362999..1363472- >mRNA_761 ID=mRNA_761|Name=jgi.p|Trimin1|156960|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_2:1362999..1363472- (Tribonema minus UTEX_B_3156 )back to top |