mRNA_11821 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|4039
Unique NamemRNA_11821
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: A0A835ZEZ7_9STRA (Ubiquitin-related domain-containing protein n=4 Tax=Eukaryota TaxID=2759 RepID=A0A835ZEZ7_9STRA)

HSP 1 Score: 770 bits (1989), Expect = 5.520e-280
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPHPQRLQHPEGVYSSLGAAPAWWHADLREDTDRQDHHPGRGALGHDRQREAEDPGQGGHPPRPAAPDLCRQAAGGRPHPERLQHPEGVHAPPGAASARRAVRSGCAG 1266
            MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPHPQRLQHPEGVYSSLGAAPAWWHADLREDTDRQDHHPGRGALGHDRQREAEDPGQGGHPPRPAAPDLCRQAAGGRPHPERLQHPEGVHAPPGAASARRAVRSGCAG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPHPQRLQHPEGVYSSLGAAPAWWHADLREDTDRQDHHPGRGALGHDRQREAEDPGQGGHPPRPAAPDLCRQAAGGRPHPERLQHPEGVHAPPGAASARRAVRSGCAG 388          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: A0A446XTY9_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446XTY9_TRITD)

HSP 1 Score: 504 bits (1299), Expect = 5.120e-176
Identity = 267/324 (82.41%), Postives = 284/324 (87.65%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPHPQRLQHPEGVYSSLGAAPAWWHADLREDTDRQDHHPGRGAL 1074
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVL+LRGGMQIFVKTLTGKTITL+VE SDTID  +A+   + G P R ++      ++     P RLQH EGV+   GA   WWHAD  +DTDRQDHHPG   L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-RTSSVSSSLASSSRMAAPWRLQHSEGVHPPPGAQAPWWHADFCQDTDRQDHHPGGRVL 323          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: A0A2V2UHT5_TRYCR (Putative polyubiquitin n=11 Tax=Eukaryota TaxID=2759 RepID=A0A2V2UHT5_TRYCR)

HSP 1 Score: 511 bits (1317), Expect = 1.750e-175
Identity = 266/316 (84.18%), Postives = 281/316 (88.92%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPHPQRLQHPEGVYSSLGAAPAWWHADLREDTDRQD 1050
            MQIFVKTLTGKTI L+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI L+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI L+VE SDTI+NVK KIQDKEGIPPDQQRLI            +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI L+VE SDTI+KRE EDP QGGH   PAAPD RWQAAGGRPH +RLQHPEGV+++  AAPA  HADLREDTD QD
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLILLASSWRTAARSADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIEKREGEDPGQGGHSAGPAAPDLRWQAAGGRPHARRLQHPEGVHAAPCAAPARRHADLREDTDGQD 316          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: A0A836KAF1_9TRYP (Uncharacterized protein n=1 Tax=Leishmania orientalis TaxID=2249476 RepID=A0A836KAF1_9TRYP)

HSP 1 Score: 531 bits (1369), Expect = 2.790e-173
Identity = 288/380 (75.79%), Postives = 310/380 (81.58%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPHPQRLQHPEGVYSSLGAAPAWWHADLREDTDRQDHHPGRGALGHDRQREAEDPGQGGHPPRPAAPDLCRQAAGGRPHPERLQHPEGVHAPPGAASARR 1242
            MQIFVKTLTGKTI L+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLV RLRGGMQIFVKTLTGKTI L+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI L+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLV           +    +             +RE +DP QGGHP  PAAPD R QAAGG PH + LQHPEGV+++ GAAPA  HADLRED  RQD   G G   H R+RE +DPGQGGHP  PAAPDL RQAAGG PH   LQHPEGVHA PGAA ARR
Sbjct:  457 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVPRLRGGMQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVPAPARRHADLREDAHRQDDRAGGGGERHHREREGQDPGQGGHPAGPAAPDLRRQAAGGGPHARGLQHPEGVHAAPGAAPARRHADLREDAHRQDDRAGGGGERHHREREGQDPGQGGHPAGPAAPDLRRQAAGGGPHARGLQHPEGVHAAPGAAPARR 836          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: A0A8B9TTH6_ANAPL (Ubiquitin B n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=A0A8B9TTH6_ANAPL)

HSP 1 Score: 502 bits (1293), Expect = 8.410e-171
Identity = 266/319 (83.39%), Postives = 280/319 (87.77%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPHPQRLQHPEGVYSSLGAAPAWWHADLREDTDRQDHHP 1059
            MQIFVKTLTGKTITL+VEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VEPSDTI+  +A+   + G PP      F  +             PEG++   GAAP  WHAD RED D QDHHP
Sbjct:  290 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIPEGIHPPPGAAPERWHADFREDLDWQDHHP 608          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: M5BSU7_THACB (Polyubiquitin n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BSU7_THACB)

HSP 1 Score: 494 bits (1273), Expect = 1.140e-170
Identity = 259/283 (91.52%), Postives = 265/283 (93.64%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPH 951
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTID  + EDPRQGG+P RP   D R QAAG R H
Sbjct:  129 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNCQGEDPRQGGYPTRPTTIDLRRQAAGRRSH 411          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: F0YAA4_AURAN (Polyubiquitin n=9 Tax=Stramenopiles TaxID=33634 RepID=F0YAA4_AURAN)

HSP 1 Score: 490 bits (1261), Expect = 1.580e-170
Identity = 255/266 (95.86%), Postives = 258/266 (96.99%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPP 900
            MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID  + +   + G PP
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPP 266          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: A0A836CJQ4_9STRA (Polyubiquitin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ4_9STRA)

HSP 1 Score: 491 bits (1264), Expect = 1.640e-170
Identity = 256/270 (94.81%), Postives = 260/270 (96.30%), Query Frame = 1
Query:   91 LSVIMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPP 900
            + V MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID  + +   + G PP
Sbjct:   27 MQVNMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPP 296          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: A0A7I8JF00_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JF00_SPIIN)

HSP 1 Score: 484 bits (1247), Expect = 5.700e-167
Identity = 263/321 (81.93%), Postives = 275/321 (85.67%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPPRPAAPDFRW-QAAGGRPHPQRLQHPEGVYSSLGAAPAWWHADLREDTDRQDHHPG 1062
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VE SDTID  +A+   + G PP      F   Q   GR         E        +P WW ADLRED+ RQDHHPG
Sbjct:   77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHPCPPSP-WWDADLREDSHRQDHHPG 396          
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Match: H3G9R0_PHYRM (Uncharacterized protein n=4 Tax=Oomycota TaxID=4762 RepID=H3G9R0_PHYRM)

HSP 1 Score: 484 bits (1245), Expect = 6.510e-167
Identity = 251/266 (94.36%), Postives = 258/266 (96.99%), Query Frame = 1
Query:  103 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDKREAEDPRQGGHPP 900
            MQIFVKTLTGKTITLDVEPSD+IDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSD+IDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSD+IDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSD+ID  + +   + G PP
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPP 266          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|4039 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEZ7_9STRA5.520e-280100.00Ubiquitin-related domain-containing protein n=4 Ta... [more]
A0A446XTY9_TRITD5.120e-17682.41Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A2V2UHT5_TRYCR1.750e-17584.18Putative polyubiquitin n=11 Tax=Eukaryota TaxID=27... [more]
A0A836KAF1_9TRYP2.790e-17375.79Uncharacterized protein n=1 Tax=Leishmania orienta... [more]
A0A8B9TTH6_ANAPL8.410e-17183.39Ubiquitin B n=1 Tax=Anas platyrhynchos TaxID=8839 ... [more]
M5BSU7_THACB1.140e-17091.52Polyubiquitin n=1 Tax=Thanatephorus cucumeris (str... [more]
F0YAA4_AURAN1.580e-17095.86Polyubiquitin n=9 Tax=Stramenopiles TaxID=33634 Re... [more]
A0A836CJQ4_9STRA1.640e-17094.81Polyubiquitin n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7I8JF00_SPIIN5.700e-16781.93Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
H3G9R0_PHYRM6.510e-16794.36Uncharacterized protein n=4 Tax=Oomycota TaxID=476... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:255911..258851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|4039|CE4038_3007
BRITEko00000,ko00001,ko04121
KEGG Pathwayko03320,map03320
KEGG koko:K08770
Preferred nameUBB
Descriptioncellular macromolecule catabolic process
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota
Evalue2.42e-172
Seed ortholog44056.XP_009037400.1
Hectar predicted targeting categoryother localisation
TranscriptId4361
TrackFilteredModels1
ProteinId4039
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|4039gene_11821Tribonema minus UTEX_B_3156 geneContig_102 255911..258851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|4039Trimin1|4039|CE4038_3007Tribonema minus UTEX_B_3156 polypeptideContig_102 256029..258481 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11821_5exon_11821_5Tribonema minus UTEX_B_3156 exonContig_102 255911..256438 -
exon_11821_4exon_11821_4Tribonema minus UTEX_B_3156 exonContig_102 257077..257122 -
exon_11821_3exon_11821_3Tribonema minus UTEX_B_3156 exonContig_102 257403..257858 -
exon_11821_2exon_11821_2Tribonema minus UTEX_B_3156 exonContig_102 258227..258486 -
exon_11821_1exon_11821_1Tribonema minus UTEX_B_3156 exonContig_102 258755..258851 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11821UTR3_11821Tribonema minus UTEX_B_3156 three_prime_UTRContig_102 255911..256028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11821CDS_11821Tribonema minus UTEX_B_3156 CDSContig_102 258227..258481 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11821UTR5_11821Tribonema minus UTEX_B_3156 five_prime_UTRContig_102 258755..258851 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11821 ID=mRNA_11821|Name=jgi.p|Trimin1|4039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1387bp|location=Sequence derived from alignment at Contig_102:255911..258851- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGCAATCACTCTCTCTCTGCGACAGCGGCGAGGACACACACACGCGACA
CAGCACAGCCCCAGACAGCAGGAGCACAGGAGCCTAGCACCTTTCAGTTA
TCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAT
GTCGAGCCCTCCGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAA
GGAGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGC
TGGAGGACGGCCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACC
CTCCACCTCGTGCTGCGCCTGCGTGGTGGCATGCAGATCTTCGTCAAGAC
CCTCACGGGCAAGACCATCACTCTTGACGTGGAGCCCTCCGACACCATCG
ACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG
CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACCCTCAG
CGACTACAACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTGCGCCTGC
GTGGTGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACT
CTGGACGTGGAGCCTTCTGACACGATCGACAATGTGAAGCAGAAGATCCA
GGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATTTTCGCTGGCA
AGCAGCTGGAGGATGGCCGCACCCTCAGTGACTACAACATCCAGAAGGAG
TCCACGCTCCACCTGGTGCTGCGCCTGCGTGGTGGCATGCAGATCTTCGT
CAAGACCCTCACGGGCAAGACCATCACCCTGGATGTTGAGCCCTCCGACA
CTATCGACAAACGTGAAGCAGAAGATCCAAGACAAGGAGGGCATCCCCCC
CGACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGACGGCCGCA
CCCTCAGCGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTGCTG
CGCCTGCGTGGTGGCATGCAGATCTTCGTGAAGACACTGACCGGCAAGAC
CATCACCCTGGACGTGGAGCCCTCGGACACGATCGACAACGTGAAGCAGA
AGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTT
GCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAACATCCA
GAAGGAGTCCACGCTCCACCTGGTGCTGCGTCTGCGCGGCGGGCTGTAAG
GAGCGGTTGCGCGGGCTAGCGTTTCTTTCTGCGCTCGACATTGCTCAGCA
TCAGGAGGCAGGTGCAGGGGCAGGGGAGTACAAAGAGATGGGGAAGCGGT
GCATGATTCACCAGGCAGGTCACTGTGTATAGCCACC
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protein sequence of jgi.p|Trimin1|4039

>Trimin1|4039|CE4038_3007 ID=Trimin1|4039|CE4038_3007|Name=jgi.p|Trimin1|4039|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=389bp
MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID
NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
GGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGK
QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDT
IDKREAEDPRQGGHPPRPAAPDFRWQAAGGRPHPQRLQHPEGVYSSLGAA
PAWWHADLREDTDRQDHHPGRGALGHDRQREAEDPGQGGHPPRPAAPDLC
RQAAGGRPHPERLQHPEGVHAPPGAASARRAVRSGCAG*
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mRNA from alignment at Contig_102:255911..258851-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11821 ID=mRNA_11821|Name=jgi.p|Trimin1|4039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2941bp|location=Sequence derived from alignment at Contig_102:255911..258851- (Tribonema minus UTEX_B_3156 )
CCGCAATCACTCTCTCTCTGCGACAGCGGCGAGGACACACACACGCGACA CAGCACAGCCCCAGACAGCAGGAGCACAGGAGCCTAGCACCTTTCAGGTG AGGAGCAGGCCCCAGCAGCCATCGGCCTGATCTGTGCGTGCTTCGCGCGC TGATGATGACTCGCTACCAGCCTAAGCAGTCAGAACGGATATCTCTCCGC CAGCCCGTAGCGGTCGCCTGCGGCCTCAGCGCGAGCTGCAGGCGCTGATG AAACATTGTGCTGTACCATTTTCTAGGCCTCCCATCGCCGCTGCCGCCAT CTCTCCGCTTGTGTGATTCGGTTGTTCGCTTAAACTGACTTTTGCCTCCC CCCGCCACCTTGCAGTTATCATGCAGATCTTCGTGAAGACGCTGACCGGC AAGACCATCACCCTGGATGTCGAGCCCTCCGACACGATCGACAACGTGAA GCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCA TCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC ATCCAGAAGGAGTCCACCCTCCACCTCGTGCTGCGCCTGCGTGGTGGCAT GCAGATCTTCGTCAAGACCCTCACGGTGAGCACCTGCTCGTTGCCGCGTG GTCAGCAGCGGTGGTTTGGTTGAGGTGCGGCACTTGTTGACACGACACGT GTAGATGGCGTTAGGAGTGGACGACTCCTGGCGTCTTGCGGGGCTGGGTT TTCTGTCTCTGGTGGTCTTATTCGGATGATCGGCTGCCCGCTCTTAAGCG ATCGCTGGCGTGATTTGTTTTGCTTTTTCATGATGGGCTTCGTTCGTTTC GTTGCCTTTCTTCGTTTCGTTGCCTTTCGAGGCCTGCTTACCCTGCGTTG TGGCGATGTGATGCTCTAACGCAAGTTTTGCTCTCCAGGCAACTGCTGGT CAGTCCCGGTGTTCTGACATCGTTTCTGTGTCTCGTCGTGCAGGGCAAGA CCATCACTCTTGACGTGGAGCCCTCCGACACCATCGACAACGTGAAGCAG AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTT TGCCGGCAAGCAGCTGGAGGATGGACGCACCCTCAGCGACTACAACATCC AGAAGGAGTCCACGCTCCACTTGGTGCTGCGCCTGCGTGGTGGCATGCAG ATCTTCGTCAAGACCCTCACGGGCAAGACCATTACTCTGGACGTGGAGCC TTCTGACACGATCGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCA TCCCCCCCGACCAGCAGCGCCTCATTTTCGCTGGCAAGCAGCTGGAGGAT GGCCGCACCCTCAGTGACTACAACATCCAGAAGGAGTCCACGCTCCACCT GGTGCTGCGCCTGCGTGGTGGCATGCAGATCTTCGTCAAGACCCTCACGG TGAGTTACGGCACCCGTTTTGTTTCTTTGGCGACATCTGTGTCTGACTGT GTTAGAGCATTGTTGGCGGCACCAGATTTGCGCAGTTGAACTGAATAGTA AAGCTGCATCGCTAAGCATCTCGCAGCTAGTTACCCGACGAGTGGTAGAT ATCACACAGATTTGGTTGCATACTGTTCCATCAGTTGTGCCTCGGTCTTC AGGTCTGCTTGCTACACGAGTTGTGTGACTCATGCCTGATCCTCATGTTG CTTCCTTTTGGTTGTGATCGTTCTTTCAGGGCAAGACCATCACCCTGGAT GTTGAGCCCTCCGACACTATCGACAATGTGAAGCAGAAGATCCAGGACAA GGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGC TGGAGGACGGCCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACG CTTCACCTGGTGCTGCGCCTGCGCGGTGGCATGCAGATCTTTGTCAAGAC CCTCACAGTGAGTCAAGGCATCCTTTTTATTCTTTGACATCATTTGCTTC AGCACTTGTGTAGGCAGCATTGAGTCATTTACAGCATCTGCTTCAGTACA GTTTAGGCAGCATTGCAGCTGCAACATGCTTGGGATTGGCAGACGATGCA TGACCATTTTTGCCCCTCGCGAGATACATTTGTGCCTCTTCTGCAGCATT TCGCGGTCGTGCACACTGTTTTGATTTTCAAGTTTTAGCAGCACTGCTCG CACATTGTCTTGCGCTTGCAGCTGGCTATCTGACAGTCATCAAAGATATC ATGACAGAGTTGATGGCATAAGCAGTTGTGCCCCTGTCATCAGAATTGCT TGTTACACAGTGGTGTCACATGAACACAATCCTGATCTTTCTTCCTTTTG GTTGTTTCATTCTCTCAGGGCAAGACCATAACCCTGGATGTGGAGCCCTC GGACACGATCGACAACGTGAAGCAGAAGATCCAAGACAAGGAGGGCATCC CCCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGACGGC CGCACCCTCAGCGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGT GCTGCGCCTGCGTGGTGGCATGCAGATCTTCGTGAAGACACTGACCGGCA AGACCATCACCCTGGACGTGGAGCCCTCGGACACGATCGACAACGTGAAG CAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGAT CTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAACA TCCAGAAGGAGTCCACGCTCCACCTGGTGCTGCGTCTGCGCGGCGGGCTG TAAGGAGCGGTTGCGCGGGCTAGCGTTTCTTTCTGCGCTCGACATTGCTC AGCATCAGGAGGCAGGTGCAGGGGCAGGGGAGTACAAAGAGATGGGGAAG CGGTGCATGATTCACCAGGCAGGTCACTGTGTATAGCCACC
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Coding sequence (CDS) from alignment at Contig_102:255911..258851-

>mRNA_11821 ID=mRNA_11821|Name=jgi.p|Trimin1|4039|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1167bp|location=Sequence derived from alignment at Contig_102:255911..258851- (Tribonema minus UTEX_B_3156 )
ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTGGATGT
CGAGCCCTCCGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGG
AGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTG
GAGGACGGCCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACCCT
CCACCTCGTGCTGCGCCTGCGTGGTGGCATGCAGATCTTCGTCAAGACCC
TCACGGGCAAGACCATCACTCTTGACGTGGAGCCCTCCGACACCATCGAC
AACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCA
GCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACCCTCAGCG
ACTACAACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTGCGCCTGCGT
GGTGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACTCT
GGACGTGGAGCCTTCTGACACGATCGACAATGTGAAGCAGAAGATCCAGG
ACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATTTTCGCTGGCAAG
CAGCTGGAGGATGGCCGCACCCTCAGTGACTACAACATCCAGAAGGAGTC
CACGCTCCACCTGGTGCTGCGCCTGCGTGGTGGCATGCAGATCTTCGTCA
AGACCCTCACGGGCAAGACCATCACCCTGGATGTTGAGCCCTCCGACACT
ATCGACAAACGTGAAGCAGAAGATCCAAGACAAGGAGGGCATCCCCCCCG
ACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACC
CTCAGCGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTGCTGCG
CCTGCGTGGTGGCATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCA
TCACCCTGGACGTGGAGCCCTCGGACACGATCGACAACGTGAAGCAGAAG
ATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGC
CGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAACATCCAGA
AGGAGTCCACGCTCCACCTGGTGCTGCGTCTGCGCGGCGGGCTGTAAGGA
GCGGTTGCGCGGGCTAG
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