mRNA_16041 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353947
Unique NamemRNA_16041
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353947 vs. uniprot
Match: A0A835ZCR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR4_9STRA)

HSP 1 Score: 433 bits (1113), Expect = 7.330e-152
Identity = 224/226 (99.12%), Postives = 224/226 (99.12%), Query Frame = 1 
Query:  142 MHKVITALEGRVHKAEAAVATLQAEAQQRHAVAADLXXRVRVLEAASAVPQAVEAEAVQPAVAAHAVAADVADKRAPQPDGEPAAKRARGGEESVMYDEFAERAQECADLCTKMAALPEDAIKIMLLYDTLTYSKGWLIVPQSRVADMRPWCTHKLGGVMPLVRIGEDKLSLRNAWLIAFQDISLIIPGDEKNWNPNAVCQWQTTAFSLLYEMLQTRIKSHTQITQ 819
            MHKVITALEGRVHKAEAAVATLQAEAQQRHAVAADL  RVRVLEAASAVPQAVEAEAVQPAVAAHAVAADVADKRAPQPDGEPAAKRARGGEESVMYDEFAERAQECADLCTKMAALPEDAIKIMLLYDTLTYSKGWLIVPQSRVADMRPWCTHKLGGVMPLVRIGEDKLSLRNAWLIAFQDISLIIPGDEKNWNPNAVCQWQTTAFSLLYEMLQTRIKSHTQITQ
Sbjct:    1 MHKVITALEGRVHKAEAAVATLQAEAQQRHAVAADLEARVRVLEAASAVPQAVEAEAVQPAVAAHAVAADVADKRAPQPDGEPAAKRARGGEESVMYDEFAERAQECADLCTKMAALPEDAIKIMLLYDTLTYSKGWLIVPQSRVADMRPWCTHKLGGVMPLVRIGEDKLSLRNAWLIAFQDISLIIPGDEKNWNPNAVCQWQTTAFSLLYEMLQTRIKSHTQITQ 226
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353947 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZCR4_9STRA7.330e-15299.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_198contigContig_198:172522..173780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353947|estExt_Genemark1.C_Ctg_1980028
Hectar predicted targeting categoryother localisation
TranscriptId354269
TrackFilteredModels1
ProteinId353947
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353947gene_16041Tribonema minus UTEX_B_3156 geneContig_198 172522..173780 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16041_1exon_16041_1Tribonema minus UTEX_B_3156 exonContig_198 172522..172959 +
exon_16041_2exon_16041_2Tribonema minus UTEX_B_3156 exonContig_198 173309..173780 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16041UTR5_16041Tribonema minus UTEX_B_3156 five_prime_UTRContig_198 172522..172662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16041CDS_16041Tribonema minus UTEX_B_3156 CDSContig_198 172663..172959 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16041UTR3_16041Tribonema minus UTEX_B_3156 three_prime_UTRContig_198 173693..173780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353947Trimin1|353947|estExt_Genemark1.C_Ctg_1980028Tribonema minus UTEX_B_3156 polypeptideContig_198 172663..173692 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16041 ID=mRNA_16041|Name=jgi.p|Trimin1|353947|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=910bp|location=Sequence derived from alignment at Contig_198:172522..173780+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCGATGGCGACAGTTCTGGAGAAGCAGCAGCACCAAGGAAGCATACAC
CGAGAGACACCACCAGAAGCAGCGACTCAGGTGACTACGACAGCAGCGAT
GTCAACAGCACTGCCATTGCATCAAGGCCTGCTTGACTGCCATGCATAAA
GTGATAACGGCGCTGGAGGGGCGCGTGCACAAGGCGGAGGCCGCTGTCGC
AACGCTGCAGGCAGAGGCGCAGCAGCGCCACGCGGTCGCAGCTGACCTGG
AGGCGCGGGTGCGGGTGCTGGAGGCGGCATCAGCAGTGCCACAGGCAGTG
GAGGCAGAGGCCGTGCAGCCCGCAGTGGCTGCTCATGCGGTGGCGGCGGA
TGTTGCGGACAAGCGCGCGCCCCAGCCAGACGGCGAGCCTGCCGCCAAGC
GCGCGCGAGGTGGCGAGGAGAGCGTAATGTACGACGAGTTTGCAGAGAGG
GCGCAAGAGTGCGCCGACCTCTGCACAAAGATGGCGGCACTTCCTGAAGA
CGCAATCAAGATCATGCTGTTGTACGACACTTTGACTTACAGCAAAGGAT
GGCTCATCGTTCCACAGTCGCGCGTCGCAGATATGAGGCCATGGTGCACA
CACAAGCTAGGCGGCGTGATGCCGTTAGTGCGTATTGGAGAGGATAAGCT
TTCCTTGCGGAACGCATGGCTTATCGCATTTCAGGACATCAGCCTCATAA
TTCCTGGGGACGAGAAAAATTGGAATCCTAACGCAGTCTGCCAGTGGCAG
ACGACAGCTTTTTCCTTGCTTTATGAGATGCTGCAAACCCGCATCAAGTC
ACACACACAGATAACACAGTAAGACTAGTATACTCTTCACGGCAAGTGGC
GCCAGTGGTAGAGCGACTTTGACAGAATCGACACTTGCTTTTTAGTAAAT
ACATCTGGTC
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protein sequence of jgi.p|Trimin1|353947

>Trimin1|353947|estExt_Genemark1.C_Ctg_1980028 ID=Trimin1|353947|estExt_Genemark1.C_Ctg_1980028|Name=jgi.p|Trimin1|353947|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=227bp
MHKVITALEGRVHKAEAAVATLQAEAQQRHAVAADLEARVRVLEAASAVP
QAVEAEAVQPAVAAHAVAADVADKRAPQPDGEPAAKRARGGEESVMYDEF
AERAQECADLCTKMAALPEDAIKIMLLYDTLTYSKGWLIVPQSRVADMRP
WCTHKLGGVMPLVRIGEDKLSLRNAWLIAFQDISLIIPGDEKNWNPNAVC
QWQTTAFSLLYEMLQTRIKSHTQITQ*
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mRNA from alignment at Contig_198:172522..173780+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16041 ID=mRNA_16041|Name=jgi.p|Trimin1|353947|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1259bp|location=Sequence derived from alignment at Contig_198:172522..173780+ (Tribonema minus UTEX_B_3156 )
CAGCGATGGCGACAGTTCTGGAGAAGCAGCAGCACCAAGGAAGCATACAC
CGAGAGACACCACCAGAAGCAGCGACTCAGGTGACTACGACAGCAGCGAT
GTCAACAGCACTGCCATTGCATCAAGGCCTGCTTGACTGCCATGCATAAA
GTGATAACGGCGCTGGAGGGGCGCGTGCACAAGGCGGAGGCCGCTGTCGC
AACGCTGCAGGCAGAGGCGCAGCAGCGCCACGCGGTCGCAGCTGACCTGG
AGGCGCGGGTGCGGGTGCTGGAGGCGGCATCAGCAGTGCCACAGGCAGTG
GAGGCAGAGGCCGTGCAGCCCGCAGTGGCTGCTCATGCGGTGGCGGCGGA
TGTTGCGGACAAGCGCGCGCCCCAGCCAGACGGCGAGCCTGCCGCCAAGC
GCGCGCGAGGTGGCGAGGAGAGCGTAATGTACGACGAGGTGAGGGATCGC
ACAACATTGTGATTTGTATTGCTGCATGTGGCCGATGGTGCACTCGCACT
TGTAAAAATTATAAAATTGACACCATCTTGGTTTTTTTTCGCTTGGGCAC
AGGATCCGAGTGAGGACGATGTATATGACTGCAGCGATTCAAAAGTGAAA
TGGAAGCACATCGCCACCACTCAGTCGAGCATCAACGCAATGGTGATTCT
AACACGACAGAATGTTGAGCTGCTTTGTGTCTCCAGACGTCATAGCCTCA
TATGCACCGCAGCATCACGATTGCATGATCTCATATTCCATTTGTCTAAT
TTTTTTCATGGCGTCATTATTGATTTTGCGCTTGCAGTTTGCAGAGAGGG
CGCAAGAGTGCGCCGACCTCTGCACAAAGATGGCGGCACTTCCTGAAGAC
GCAATCAAGATCATGCTGTTGTACGACACTTTGACTTACAGCAAAGGATG
GCTCATCGTTCCACAGTCGCGCGTCGCAGATATGAGGCCATGGTGCACAC
ACAAGCTAGGCGGCGTGATGCCGTTAGTGCGTATTGGAGAGGATAAGCTT
TCCTTGCGGAACGCATGGCTTATCGCATTTCAGGACATCAGCCTCATAAT
TCCTGGGGACGAGAAAAATTGGAATCCTAACGCAGTCTGCCAGTGGCAGA
CGACAGCTTTTTCCTTGCTTTATGAGATGCTGCAAACCCGCATCAAGTCA
CACACACAGATAACACAGTAAGACTAGTATACTCTTCACGGCAAGTGGCG
CCAGTGGTAGAGCGACTTTGACAGAATCGACACTTGCTTTTTAGTAAATA
CATCTGGTC
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Coding sequence (CDS) from alignment at Contig_198:172522..173780+

>mRNA_16041 ID=mRNA_16041|Name=jgi.p|Trimin1|353947|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=681bp|location=Sequence derived from alignment at Contig_198:172522..173780+ (Tribonema minus UTEX_B_3156 )
ATGCATAAAGTGATAACGGCGCTGGAGGGGCGCGTGCACAAGGCGGAGGC
CGCTGTCGCAACGCTGCAGGCAGAGGCGCAGCAGCGCCACGCGGTCGCAG
CTGACCTGGAGGCGCGGGTGCGGGTGCTGGAGGCGGCATCAGCAGTGCCA
CAGGCAGTGGAGGCAGAGGCCGTGCAGCCCGCAGTGGCTGCTCATGCGGT
GGCGGCGGATGTTGCGGACAAGCGCGCGCCCCAGCCAGACGGCGAGCCTG
CCGCCAAGCGCGCGCGAGGTGGCGAGGAGAGCGTAATGTACGACGAGTTT
GCAGAGAGGGCGCAAGAGTGCGCCGACCTCTGCACAAAGATGGCGGCACT
TCCTGAAGACGCAATCAAGATCATGCTGTTGTACGACACTTTGACTTACA
GCAAAGGATGGCTCATCGTTCCACAGTCGCGCGTCGCAGATATGAGGCCA
TGGTGCACACACAAGCTAGGCGGCGTGATGCCGTTAGTGCGTATTGGAGA
GGATAAGCTTTCCTTGCGGAACGCATGGCTTATCGCATTTCAGGACATCA
GCCTCATAATTCCTGGGGACGAGAAAAATTGGAATCCTAACGCAGTCTGC
CAGTGGCAGACGACAGCTTTTTCCTTGCTTTATGAGATGCTGCAAACCCG
CATCAAGTCACACACACAGATAACACAGTAA
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