Trimin1|353947|estExt_Genemark1.C_Ctg_1980028 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353947
Unique Name	Trimin1\|353947\|estExt_Genemark1.C_Ctg_1980028
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	227

Homology

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BLAST of jgi.p|Trimin1|353947 vs. uniprot
Match: A0A835ZCR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR4_9STRA)

HSP 1 Score: 433 bits (1114), Expect = 2.520e-153
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0

Query:    1 MHKVITALEGRVHKAEAAVATLQAEAQQRHAVAADLEARVRVLEAASAVPQAVEAEAVQPAVAAHAVAADVADKRAPQPDGEPAAKRARGGEESVMYDEFAERAQECADLCTKMAALPEDAIKIMLLYDTLTYSKGWLIVPQSRVADMRPWCTHKLGGVMPLVRIGEDKLSLRNAWLIAFQDISLIIPGDEKNWNPNAVCQWQTTAFSLLYEMLQTRIKSHTQITQ 226
            MHKVITALEGRVHKAEAAVATLQAEAQQRHAVAADLEARVRVLEAASAVPQAVEAEAVQPAVAAHAVAADVADKRAPQPDGEPAAKRARGGEESVMYDEFAERAQECADLCTKMAALPEDAIKIMLLYDTLTYSKGWLIVPQSRVADMRPWCTHKLGGVMPLVRIGEDKLSLRNAWLIAFQDISLIIPGDEKNWNPNAVCQWQTTAFSLLYEMLQTRIKSHTQITQ
Sbjct:    1 MHKVITALEGRVHKAEAAVATLQAEAQQRHAVAADLEARVRVLEAASAVPQAVEAEAVQPAVAAHAVAADVADKRAPQPDGEPAAKRARGGEESVMYDEFAERAQECADLCTKMAALPEDAIKIMLLYDTLTYSKGWLIVPQSRVADMRPWCTHKLGGVMPLVRIGEDKLSLRNAWLIAFQDISLIIPGDEKNWNPNAVCQWQTTAFSLLYEMLQTRIKSHTQITQ 226

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353947 vs. uniprot

BLAST of jgi.p|Trimin1|353947 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZCR4_9STRA	2.520e-153	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_198	contig	Contig_198:172663..173692 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353947	mRNA_16041	Tribonema minus UTEX_B_3156	mRNA	Contig_198 172522..173780 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353947|estExt_Genemark1.C_Ctg_1980028 ID=Trimin1|353947|estExt_Genemark1.C_Ctg_1980028|Name=jgi.p|Trimin1|353947|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=227bp
MHKVITALEGRVHKAEAAVATLQAEAQQRHAVAADLEARVRVLEAASAVP
QAVEAEAVQPAVAAHAVAADVADKRAPQPDGEPAAKRARGGEESVMYDEF
AERAQECADLCTKMAALPEDAIKIMLLYDTLTYSKGWLIVPQSRVADMRP
WCTHKLGGVMPLVRIGEDKLSLRNAWLIAFQDISLIIPGDEKNWNPNAVC
QWQTTAFSLLYEMLQTRIKSHTQITQ*