mRNA_16267 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A835Z4H5_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA) HSP 1 Score: 439 bits (1128), Expect = 1.670e-154 Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 2
Query: 41 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDMSA 718
MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDMSA
Sbjct: 1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDMSA 226
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA) HSP 1 Score: 367 bits (943), Expect = 2.580e-126 Identity = 191/220 (86.82%), Postives = 205/220 (93.18%), Query Frame = 2
Query: 59 LAACL-VIAAVSDAFTA-SAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 712
+AACL ++ AV+DA+ A SAF+GQA+ T KAS+++SMKIFDWKRR+ DS N AV ELSPATL PSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEG+TVSFETLHEQGTLTKTSL+WHKVVGNGELNV+ LTVQAHAFTGSAKEAIE AGGKCQLLSPTTNEIVDM
Sbjct: 6 VAACLALVVAVADAWVATSAFNGQAVGTHTCKASNAVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI) HSP 1 Score: 271 bits (693), Expect = 3.130e-88 Identity = 144/227 (63.44%), Postives = 169/227 (74.45%), Query Frame = 2
Query: 41 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATG---KASSSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 712
M++ L A + + F +AF GQ L A T + ++ ++MKIFDWKRRES+ L + ++ TL P+PGSR R RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EGATV+FE+L G +TKT RWHKVVG EL GLTVQAH FT SA EAIE GGKCQLLSPTTNE++ M
Sbjct: 1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 226
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA) HSP 1 Score: 242 bits (618), Expect = 5.970e-77 Identity = 131/220 (59.55%), Postives = 166/220 (75.45%), Query Frame = 2
Query: 71 LVIAAV---SDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLT---PSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVD 709
+++AAV +DAF S+FHG ++ ++SS++MK+FDWKRRE+D + E TL P+PGSRHRK RKGRGI+AGQGA+CGFGMRGQ+SRSG RAGFEGGQQPLYRRLPKFVG+PMGPGH+K ++LI L+ LN AAEG+TV+F +L E G +TK+ + HKVV G E +GL VQAHAFT SA+ AIE AGGKC+LLSPTT +++
Sbjct: 6 VILAAVVVSTDAF--SSFHGSSVSQHVSTSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVLE 223
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA) HSP 1 Score: 234 bits (596), Expect = 1.280e-73 Identity = 130/220 (59.09%), Postives = 160/220 (72.73%), Query Frame = 2
Query: 65 ACLVIAAVSDAFTA-SAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAVTELSPATLT---PSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVD 709
A L+ AAV+ A S+FHG ++ A+ +MK+FDWKRRE+D + E TL P+PGSRHRK RKGRGI+AGQGA+CGFGMRGQ+SRSG RAGFEGGQQPLYRRLPKFVG+PMGPGH+K ++LI + +N AAEG+TVSF +L E G +TK HKVV G E + +G+TVQAHAFT SA+ AIE AGGKC+LLSPTT ++D
Sbjct: 5 AVLLAAAVAVPVDALSSFHGSSVAHRVSTATGP-TMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVLD 223
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A448ZNF8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA) HSP 1 Score: 232 bits (592), Expect = 4.670e-73 Identity = 124/220 (56.36%), Postives = 160/220 (72.73%), Query Frame = 2
Query: 59 LAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRR---ESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIV 706
+A +++A V+ S+F G L A + +++++SMK+ DWKRR ESD ++ E + +L P+PGSR +K RKGRGISAGQGA+CGFGMRGQ+SRSG R GFEGGQQPLYRRLPKF GRPMGPGHTKKE++LI L+ALN A G+T +FE+L E +TK+ HKVV G E + +TVQAHAFT SA+ AIE AGGKC+LL P+T E++
Sbjct: 3 VAGLILLAGVASTDAFSSFTGTRLAAVSTSSANTLSMKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLFESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVI 222
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A6U3RP18_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RP18_9STRA) HSP 1 Score: 226 bits (576), Expect = 1.400e-70 Identity = 128/225 (56.89%), Postives = 159/225 (70.67%), Query Frame = 2
Query: 53 LYLAACLV--IAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRRESDSFNLAV---TELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVD 709
L LAA +V AA S +FT SA +C+ +S++SMKIFDWKRRE+D L TE + L P+PGSR RK RKGRGISAGQGA+CGFGMRGQ++R+G R GFEGGQQPLYRRLPKFVGRP GPGHTK E+++I L+ LN AA G TV+F+TL E G +TK+ L HKVV G + + +TVQAH FT +A+ AIE GG CQ+L TT E+++
Sbjct: 8 LLLAAVMVSTAAAFSSSFTPSAQRVSTVCS-----TSNLSMKIFDWKRREADESALNDVDNTEFTFDNLRPAPGSRKRKNRKGRGISAGQGATCGFGMRGQKARAGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHTKTEYNIIKLDELNGAAAGETVNFDTLFEAGAITKSKLDIHKVVVGREDFTAKDITVQAHGFTKAARAAIEANGGTCQILKRTTGEVIE 227
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: K0SHX0_THAOC (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHX0_THAOC) HSP 1 Score: 225 bits (573), Expect = 3.280e-70 Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 2
Query: 134 AATGKASSSISMKIFDWKRRESD--SFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIV 706
A T + S +SMK++DWKRR +D + N TE + ++ P+PGSR RK RKGRGISAGQGA+CGFGMRGQ++RSG R GFEGGQQPLYRRLPKF GRP GPGH K E++LI L+ +N EG+TVSFE+L E G TK L HKVV G E +G+TVQAHAFT SA+EAIE AGGK LLS TTNE++
Sbjct: 28 AVTSSSPSQLSMKLYDWKRRTADESAVNDLETEWTLGSIKPAPGSRKRKQRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFTGRPTGPGHQKTEYNLIKLDDINGCEEGSTVSFESLIETGATTKAKLDIHKVVVGREEFTAKGVTVQAHAFTKSAQEAIEGAGGKAVLLSKTTNEVL 221
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP) HSP 1 Score: 225 bits (573), Expect = 3.730e-70 Identity = 112/185 (60.54%), Postives = 141/185 (76.22%), Query Frame = 2
Query: 164 SMKIFDWKRRESDSFN--LAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 712
SMK+FDWK+R +++++ + E+S T+ P+PGSR RK RKGRG++AGQG SCGFGMRGQ+SRSG R GFEGGQ PLYRRLPK+VGRPMGPGHTK ++L+ L+ LN AEG V+F+ L E G +TK + K++G EL V+ LTV+AHAFT SA EAIE AGGKC LLSPTT E ++M
Sbjct: 38 SMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINM 222
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Match: A0A7S1H2P5_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2P5_9STRA) HSP 1 Score: 222 bits (566), Expect = 4.410e-69 Identity = 118/196 (60.20%), Postives = 147/196 (75.00%), Query Frame = 2
Query: 134 AATGKASSSISMKIFDWKRRESDSFNLAVTE---LSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVV-GNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVD 709
A+ K+SS++SMKIFDWKRRE+D L + + T+ P+PGSR RK RKGRGI+AGQGA+CGFGMRGQ+SRSG R GFEGGQ PLYRRLPKFVG+P+GPGHTK ++LI L +NSA G+T +FE+L E G TK+ HKVV GN E + +TVQAHAFT +A+ AIENAGGKC+LL TT E+++
Sbjct: 31 ASVPKSSSNLSMKIFDWKRREADESALNDPDGPVWTVNTVKPAPGSRKRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPERPGFEGGQTPLYRRLPKFVGKPLGPGHTKTVYNLIKLNQINSAEPGSTCNFESLLESGIATKSRYPIHKVVVGNDEFTAKDVTVQAHAFTAAARAAIENAGGKCELLKRTTGEVIE 226 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|36698 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16267 ID=mRNA_16267|Name=jgi.p|Trimin1|36698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=847bp|location=Sequence derived from alignment at Contig_196:227680..231059- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCAGGCTTGACCGACGCAGGCGGGGGCGGAAGCGGCAATCATGAGGTCATback to top protein sequence of jgi.p|Trimin1|36698 >Trimin1|36698|CE36697_1051 ID=Trimin1|36698|CE36697_1051|Name=jgi.p|Trimin1|36698|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=227bp MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKASSSISMKIFDWKRback to top mRNA from alignment at Contig_196:227680..231059- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16267 ID=mRNA_16267|Name=jgi.p|Trimin1|36698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3380bp|location=Sequence derived from alignment at Contig_196:227680..231059- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_196:227680..231059- >mRNA_16267 ID=mRNA_16267|Name=jgi.p|Trimin1|36698|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=681bp|location=Sequence derived from alignment at Contig_196:227680..231059- (Tribonema minus UTEX_B_3156 )back to top |