mRNA_17473 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A835Z5Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y5_9STRA) HSP 1 Score: 382 bits (982), Expect = 7.370e-134 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1
Query: 1 MEEERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRARWPVQLERLVYWAIGVSGDAPEPCIDRPLPPKLTELELNGCSIATHLPRMLQKLKLGRSFSQELCLTGSLIATVNSSKYSYD 582
MEEERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRARWPVQLERLVYWAIGVSGDAPEPCIDRPLPPKLTELELNGCSIATHLPRMLQKLKLGRSFSQELCLTGSLIATVNSSKYSYD
Sbjct: 1 MEEERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRARWPVQLERLVYWAIGVSGDAPEPCIDRPLPPKLTELELNGCSIATHLPRMLQKLKLGRSFSQELCLTGSLIATVNSSKYSYD 194
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A835ZHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHU4_9STRA) HSP 1 Score: 213 bits (543), Expect = 7.150e-65 Identity = 149/359 (41.50%), Postives = 162/359 (45.13%), Query Frame = 1
Query: 1 MEEERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPL---------------------------------------------------------------------------------------------------SLPPSLVRLELNGFR----------------------------------------------------------------ARWPVQLERLVYWAIGVS--GDAPEPCIDRPLPPKLTELELNGCSIATHLPRMLQKLKLGRSFSQELCLTGSLIATVNSSKYSYD 582
MEEERIRVPAPAGS +QQEIV MVFTSMA RRLLPKK WSLSRLLHDTVAP+IKVHLVADS N+ LHRLLE TSRR ++RLTLDGDFTS QQRPL SLP SL L+L GF+ ARWP LERLV WA+G S DAPEPCIDRPLPP LT+LELNGCSIAT LP+ LQ L+LGR FSQEL L GS TVN +Y Y+
Sbjct: 1 MEEERIRVPAPAGSLSQQEIVMMVFTSMAGRRLLPKKCWSLSRLLHDTVAPIIKVHLVADSINAATLHRLLEDTSRRNVQRLTLDGDFTSMQQRPLNLVPLLSPAVAQVDVAFCSFSGSIEDVLTIPSLPEGVASLSVTAGFSRDVVWAFSKLPQSLRHLIVDATTDVIVFEQPLPTLLESFIVESGGEVHVGAGSLPASLRNLQLWGFQQLYELPPRLRVLMLQRYIYPLPLLPDTLETLVLDYCTHHVSNLPDSVRSLALYWHPAQPAPPLPARWPAHLERLVDWAVGESEPDDAPEPCIDRPLPPTLTQLELNGCSIATDLPQTLQTLRLGRGFSQELDLAGSFKVTVNGRRYCYE 359
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A835YUX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX2_9STRA) HSP 1 Score: 170 bits (431), Expect = 3.770e-49 Identity = 112/270 (41.48%), Postives = 137/270 (50.74%), Query Frame = 1
Query: 10 ERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVH-----LVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRA---------------------------------------------------------------------------RWPVQLERLVYWAIGVSGDAPEPCIDRPLPPKLTELELNGCSIATHLPRMLQKLKLGRSFSQELCLTGSLIATVNSSKYSY 579
ER PAP G + Q+++RMVFTSMA RRLLPK+ W L+R + DT AP + VH L ADST+ ILH LLE ++RR + +LT++GDFTS Q+RPLSLPPSLV L LNGFR RWP LERL+YWA S AP P I R LPP L EL LNGC + LPR LQK++LGR+F+Q+L TG + TVNS+ Y
Sbjct: 2 ERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWA--KSDGAPMPVIKR-LPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRV--TVNSNDNWY 266
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A835Z4J5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J5_9STRA) HSP 1 Score: 173 bits (438), Expect = 6.750e-48 Identity = 92/111 (82.88%), Postives = 97/111 (87.39%), Query Frame = 1
Query: 1 MEEERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFR 333
ME ERIRVPAPA S +QQEIVRMVFTSMA RRLLPK+ WSLS LLHDTVAP I+VH VADS +S +LHRLLE TSRRRIR LTLDGDFTS QQRPLSLPPSL RLELNGFR
Sbjct: 1 MEVERIRVPAPASSLSQQEIVRMVFTSMAGRRLLPKECWSLSSLLHDTVAPTIEVHPVADSADSAVLHRLLEDTSRRRIRCLTLDGDFTSIQQRPLSLPPSLERLELNGFR 111
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A836CJI5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI5_9STRA) HSP 1 Score: 149 bits (376), Expect = 6.700e-38 Identity = 84/146 (57.53%), Postives = 97/146 (66.44%), Query Frame = 1
Query: 70 VFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVAD-STNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRARWPVQLERLVYWAIGVSGDAPEPCIDRP-LPPKLTELELNGCSIATHLPRMLQKLK 501
VFT MA R LLPK WSLSR +HDT AP ++V LV D + + H LLE +RR I L+LDG F T +RPLSLPP LVRLEL F+ARWP LERLVYWA DAP P +D LP L LELNGCS+ T +PR LQ L+
Sbjct: 4 VFTIMAGRSLLPKAGWSLSRAMHDTAAPTVRVALVDDINRRFAVPHHLLEDRTRRSIVELSLDGLFDDTHERPLSLPPGLVRLELKAFQARWPPHLERLVYWAKSEPEDAP-PFLDTDRLPSTLKRLELNGCSVCTRVPRTLQTLR 148
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A836CCC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC0_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.080e-30 Identity = 64/105 (60.95%), Postives = 74/105 (70.48%), Query Frame = 1
Query: 28 APAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRARW 342
AP + EI+R VFTSMA RRLLPK+ WSL+R +HDT AP ++VHLVA S + I H LLEG RR I LT++GDFT Q PLSLPPSLVRL L GFR W
Sbjct: 215 APTAPANHHEIMRRVFTSMAGRRLLPKESWSLNRAIHDTAAPTVEVHLVAGSASPAIAHCLLEGIVRRLIVNLTMEGDFTKIQAHPLSLPPSLVRLSLRGFRVHW 319
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A835YM31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM31_9STRA) HSP 1 Score: 127 bits (320), Expect = 2.040e-30 Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 1
Query: 10 ERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFR 333
+R R PAPA S+ +I+RMV +MA RRLLPK+ WSLSR +HD+ AP ++V LVADS I HRLL+ T+RR + +LT++GDF+S Q RPLSLP SLVRLEL+GFR
Sbjct: 167 DRARHPAPAAPSSHDDILRMVLLNMAGRRLLPKEAWSLSRSVHDSAAPTVQVRLVADSAAFAIPHRLLDDTARRLVVKLTMEGDFSSIQDRPLSLPASLVRLELHGFR 274
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A835YW32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW32_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.920e-30 Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 1
Query: 82 MARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFR 333
MA RRLLPK WSL+R +HDT AP +KV L ADS I HR+LE ++RR + RLT+DGDFTS Q+RPLSLPPSLVRLELNGFR
Sbjct: 1 MAGRRLLPKNCWSLNRAIHDTAAPTVKVRLEADSATCAIFHRILEDSARRLVVRLTMDGDFTSIQERPLSLPPSLVRLELNGFR 84
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A835YUY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY3_9STRA) HSP 1 Score: 119 bits (299), Expect = 5.650e-29 Identity = 66/130 (50.77%), Postives = 84/130 (64.62%), Query Frame = 1
Query: 13 RIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRARW---PVQLERLVYWAIGVSGD 393
R+ + G + Q+I+R+VFTSMA RRLLP++ WSLSR +HDT AP++KV L A + H LLE T+R+ I LT++GDFT Q RPLSLPPSLV+LEL GFR P L +L A GD
Sbjct: 73 RLELAGFTGDRSHQDIIRIVFTSMAGRRLLPEEGWSLSRAIHDTAAPIVKVRLEAGGVPIAMAHHLLEDTARKLIVELTMEGDFTEIQARPLSLPPSLVQLELAGFRGELGPAPSGLRKLSLCAYCEDGD 202
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Match: A0A835YTI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI8_9STRA) HSP 1 Score: 118 bits (295), Expect = 5.780e-28 Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 1
Query: 61 VRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVHLVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFR 333
+R VFTSMA RRLLPK+ WSL+R++HDT AP +K + AD+ I HRLLE TSRR I L ++GDFT Q+RPLSLPPSLVRLELNGFR
Sbjct: 1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTVKARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFR 91 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353900 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17473 ID=mRNA_17473|Name=jgi.p|Trimin1|353900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=654bp|location=Sequence derived from alignment at Contig_194:184768..186284- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGAGGAGGAGCGGATCCGAGTTCCCGCGCCTGCGGGCTCTTCGACTCAback to top protein sequence of jgi.p|Trimin1|353900 >Trimin1|353900|estExt_Genemark1.C_Ctg_1940020 ID=Trimin1|353900|estExt_Genemark1.C_Ctg_1940020|Name=jgi.p|Trimin1|353900|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=195bp MEEERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAback to top mRNA from alignment at Contig_194:184768..186284- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17473 ID=mRNA_17473|Name=jgi.p|Trimin1|353900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1517bp|location=Sequence derived from alignment at Contig_194:184768..186284- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_194:184768..186284- >mRNA_17473 ID=mRNA_17473|Name=jgi.p|Trimin1|353900|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=585bp|location=Sequence derived from alignment at Contig_194:184768..186284- (Tribonema minus UTEX_B_3156 )back to top |