mRNA_17245 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|35968
Unique NamemRNA_17245
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: A0A836CII2_9STRA (Sld5 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII2_9STRA)

HSP 1 Score: 424 bits (1091), Expect = 6.330e-149
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1 
Query:   16 MASHGVPEPGSEASTLRHLSPDELEYLAGDEMVEVVPSESHKRLHFRGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAKGRAEVARLQRVSAPDAMGGAAPKAXXXXXXXXXXXXXXXXXXXXSRLRRFR 741
            MASHGVPEPGSEASTLRHLSPDELEYLAGDEMVEVVPSESHKRLHFRGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAKGRAEVARLQRVSAPDAMGGAAPKAXXXXXXXXXXXXXXXXXXXXSRLRRFR
Sbjct:    1 MASHGVPEPGSEASTLRHLSPDELEYLAGDEMVEVVPSESHKRLHFRGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAKGRAEVARLQRVSAPDAMGGAAPKAXXXXXXXXXXXXXXXXXXXXSRLRRFR 242
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: D7G631_ECTSI (Sld5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G631_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.310e-56
Identity = 99/185 (53.51%), Postives = 133/185 (71.89%), Query Frame = 1 
Query:   40 PGSEASTLRHLSPDELEYLAGDEMVEVVPSESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREET-FAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAK 588
            P +++  L  L+  ELE++A D ++E+VP   H  LH  +G +GPFV  +R  VPLWLAI LK+R K  IACP +M+   LE+VL  ER +   F  LP HYLEI+SLLL+ A+DD+ ++ DR+R LLED+ENVR+ KMY+GMG AAQ    A+KVN +GAMELLPVR+FF+ AL+S+Y +SG K
Sbjct:    2 PSADSGGLAQLTAAELEFIAEDALIEIVPKFKHGPLHLIQGDFGPFVPQARAKVPLWLAITLKKRQKCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDI-EEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLYVVSGQK 185
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: A0A2D4C9F5_PYTIN (DNA replication complex GINS protein PSF2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9F5_PYTIN)

HSP 1 Score: 133 bits (335), Expect = 1.250e-34
Identity = 77/180 (42.78%), Postives = 111/180 (61.67%), Query Frame = 1 
Query:   70 LSPDELEYLAGDEMVEVVPS----ESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADG-----AIKVNRIGAMELLPVRTFFSAALSSMYDIS 579
            LS  E+E+LA  E+++++P     E+   L+F  G +GPF  G  T VPLWLAIMLK+ NK  I  P W + + L + L  E+  + F ELPFHYLEI+SLL   AA+D+ +Q++ +R LLEDI+NVRQ K+  G+   A          AI++N IGA+E+  VR F   +L+  Y ++
Sbjct:    9 LSASEIEFLAEQELIDIIPHFGIRENDGVLNFISGDFGPFQPGITTRVPLWLAIMLKQLNKCRIIEPSWFSVDYLSQRLEREKDSDVFEELPFHYLEIASLLFKHAAEDI-EQIEHIRSLLEDIQNVRQDKIRNGLYKIANDVQSGGTAYAIQMNNIGALEVNSVRQFMIGSLNKFYRLA 187
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: A0A225V0D2_9STRA (DNA replication complex GINS protein PSF2 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0D2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.050e-34
Identity = 77/180 (42.78%), Postives = 107/180 (59.44%), Query Frame = 1 
Query:   70 LSPDELEYLAGDEMVEVVPS----ESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADG-----AIKVNRIGAMELLPVRTFFSAALSSMYDIS 579
            LS  E E+LA  E++ ++P     +++  L+   G +GPF  G  T VPLWLAIMLK+ NK  I  P W++ E L   L  E+  E F ELPFHYLEI+SLLL  A +D+ Q  + +R LLED++NVRQ K+  G+   A    G     AI++N I A+E+  VR F   +L+  Y +S
Sbjct:    4 LSASETEFLAEQELIAIMPHFHLRDNNAMLNLISGDFGPFQPGITTHVPLWLAIMLKQLNKCRILAPSWLSVEYLTSRLEREKASEAFEELPFHYLEIASLLLKNAPEDLDQG-EHLRSLLEDLQNVRQDKIRNGLAKIAGDVQGGGTALAIQMNNISALEISSVREFMLGSLNQFYQLS 182
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: A0A2Z7API4_9LAMI (DNA replication complex GINS protein PSF2 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7API4_9LAMI)

HSP 1 Score: 132 bits (331), Expect = 3.470e-34
Identity = 75/183 (40.98%), Postives = 111/183 (60.66%), Query Frame = 1 
Query:   43 GSEASTLRHLSPDELEYLAGDEMVEVVPSESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAK 588
            G+  S     S  ELE+LA DEMVE+VP+   + L+F  G +GPF+    T VPLWLA+ L++R K +I  P WM+ E L +VL AER  E F  LPFHY+EIS LL   A +D+   +  +R L+EDI++VR  K+  G+   ++    A+++  + AME   VR F + AL + + +S ++
Sbjct:    3 GASGSNASAFSAAELEFLAEDEMVEIVPNFRMEPLNFISGDFGPFIPQMPTEVPLWLAVSLRKRGKCTIRTPEWMSVEKLTQVLEAERDSEKFQPLPFHYVEISRLLFDHAREDIPD-IYMVRSLIEDIKDVRFHKIGTGLEIISKERTYALRLKNLSAMEANIVRPFVTKALETFHKLSSSE 184
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: A0A6A3SX89_9STRA (DNA replication complex GINS protein PSF2 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SX89_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.560e-34
Identity = 77/181 (42.54%), Postives = 109/181 (60.22%), Query Frame = 1 
Query:   70 LSPDELEYLAGDEMVEVVPS----ESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGM----GDAAQRADGA--IKVNRIGAMELLPVRTFFSAALSSMYDIS 579
            LS  E E+LA  E++ ++P     +++  L+F  G +GPF  G  T VPLWLAIMLK+ NK  I  P W++ + L   L  E+  + F ELPFHYLE++SLLL  A +D+ Q  + MR LLED++NVRQ K+  G+    GD  Q    A  I++N I A+E+  VR F   +L+  Y +S
Sbjct:    4 LSASETEFLAEQELIAILPHFHLRDNNGMLNFISGDFGPFQPGITTHVPLWLAIMLKQLNKCRILAPSWLSVDYLTTRLEREKTSDAFEELPFHYLEVASLLLKNAPEDLNQG-EHMRSLLEDLQNVRQDKIRNGLSRIAGDVVQSGGSASVIQMNNISALEINSVREFMIGSLNQFYRLS 183
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: A0A6I9TZ02_SESIN (DNA replication complex GINS protein PSF2 n=4 Tax=Lamiales TaxID=4143 RepID=A0A6I9TZ02_SESIN)

HSP 1 Score: 130 bits (326), Expect = 1.770e-33
Identity = 76/188 (40.43%), Postives = 111/188 (59.04%), Query Frame = 1 
Query:   28 GVPEPGSEASTLRHLSPDELEYLAGDEMVEVVPSESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAK 588
            G  EP + A      S  ELE+LA DEM+E+VP+     L+F  G +GPF     T VPLWLA+ LK+R K +I  P WM+ + L +VL AER  E F  LPFHY+EI+ LL   A +D+   +  +R L+EDI++VR  K+  G+   ++    A+++  + AME   VR F + AL + Y +S ++
Sbjct:    3 GASEPQASA-----FSAAELEFLAEDEMIEIVPNLRMDPLNFISGDFGPFRPQIATQVPLWLAVALKKRGKCTIRAPEWMSVDKLAQVLEAERDSEKFQHLPFHYVEIARLLFDYAREDIPD-IYMVRSLIEDIKDVRFHKIGTGLEIISRERTYALRLKNLSAMEANIVRPFVTRALETFYKLSSSE 184
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: A0A3R7H5C6_9STRA (DNA replication complex GINS protein PSF2 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H5C6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.720e-33
Identity = 77/182 (42.31%), Postives = 114/182 (62.64%), Query Frame = 1 
Query:   70 LSPDELEYLAGDEMVEVVPS----ESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGM----GDAAQRADG---AIKVNRIGAMELLPVRTFFSAALSSMYDIS 579
            L+  E E+LA  E++ ++P     +++  L+F  G +GPF  G  T VPLWLA+MLK+ NK  I  P W++ ++L   L  E+  + F ELPFHYLE++SLLL  A +D+ +Q + +R LLED++NVRQ K+ KG+    GD  Q +DG   AI++N I A+E+  VR F   +L   Y +S
Sbjct:    4 LTASETEFLAEQELIAILPHFHLRDNNGMLNFISGDFGPFQPGIATHVPLWLAMMLKQLNKCRILPPSWLSVDNLTSRLEREKTSDVFEELPFHYLEVASLLLKNAPEDL-EQGEHIRSLLEDLQNVRQDKIRKGLSKIAGDVLQ-SDGSAYAIQMNNIAALEINSVREFMIGSLDQFYRVS 183
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BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: A0A0P1AAY9_PLAHL (DNA replication complex GINS protein PSF2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAY9_PLAHL)

HSP 1 Score: 129 bits (325), Expect = 3.530e-33
Identity = 75/181 (41.44%), Postives = 105/181 (58.01%), Query Frame = 1 
Query:   70 LSPDELEYLAGDEMVEVVPSESHKRLH------FRGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADG-----AIKVNRIGAMELLPVRTFFSAALSSMYDIS 579
            LS  E E+LA  E++ ++P   H R H        G +GPF  G    VPLWLAIMLK+ +K  I  P W++ + L   L  E+  E F ELPFHYLEI+SLLL  A +D+ +Q + +R+LLED++NVRQ K+  G+   A          AI++N I A+E+  VR F   +L+  Y +S
Sbjct:    4 LSASETEFLAEQELIMIMP-HFHLRDHNGMLNFICGNFGPFQPGMTMHVPLWLAIMLKQVHKCRILAPSWLSVDYLSAQLEREKTSEVFEELPFHYLEIASLLLQNAPEDL-EQSEHLRILLEDLQNVRQDKIRNGLAKIALDVQNGGTALAIQMNNISALEITSVREFMLGSLNQFYQLS 182
[Close]
BLAST of jgi.p|Trimin1|35968 vs. uniprot
Match: G4ZBG3_PHYSP (DNA replication complex GINS protein PSF2 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZBG3_PHYSP)

HSP 1 Score: 129 bits (325), Expect = 3.630e-33
Identity = 76/181 (41.99%), Postives = 109/181 (60.22%), Query Frame = 1 
Query:   70 LSPDELEYLAGDEMVEVVPS----ESHKRLHF-RGTYGPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGM----GDAAQRADGA--IKVNRIGAMELLPVRTFFSAALSSMYDIS 579
            LS  E E+LA  E++ ++P     +++  L+F  G +GPF  G  T VPLWLAIMLK+ NK  I  P W++ + L   L  E+  + F ELPFHYLE++SLLL  A +D+ Q  + +R LLED++NVRQ K+  G+    GD  Q    A  I++N I A+E+  VR F   +L+  Y +S
Sbjct:    4 LSASETEFLAEQELIAILPHFHLRDNNGMLNFISGDFGPFQPGITTHVPLWLAIMLKQLNKCRILAPSWLSVDYLMSRLEREKASDAFEELPFHYLEVASLLLKNAPEDLDQG-EHLRSLLEDLQNVRQDKIRNGLSRIAGDVVQSGGSASVIQMNNISALEINSVREFMIGSLNQFYRLS 183
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|35968 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CII2_9STRA6.330e-149100.00Sld5 domain-containing protein n=1 Tax=Tribonema m... [more]
D7G631_ECTSI1.310e-5653.51Sld5 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2D4C9F5_PYTIN1.250e-3442.78DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A225V0D2_9STRA3.050e-3442.78DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A2Z7API4_9LAMI3.470e-3440.98DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A6A3SX89_9STRA6.560e-3442.54DNA replication complex GINS protein PSF2 n=3 Tax=... [more]
A0A6I9TZ02_SESIN1.770e-3340.43DNA replication complex GINS protein PSF2 n=4 Tax=... [more]
A0A3R7H5C6_9STRA2.720e-3342.31DNA replication complex GINS protein PSF2 n=4 Tax=... [more]
A0A0P1AAY9_PLAHL3.530e-3341.44DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
G4ZBG3_PHYSP3.630e-3341.99DNA replication complex GINS protein PSF2 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_191contigContig_191:131727..137350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|35968|CE35967_69
BRITEko00000,ko00002,ko03032
KEGG ModuleM00286
KEGG koko:K10733
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010564,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022616,GO:0030261,GO:0031261,GO:0031298,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032784,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0045787,GO:0045931,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071162,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:1900087,GO:1901360,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902292,GO:1902315,GO:1902806,GO:1902808,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:2000045,GO:2000112,GO:2001141
Preferred nameGINS2
Descriptiondouble-strand break repair via break-induced replication
COG categoryKLT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5093@1|root,KOG4071@2759|Eukaryota
Evalue1.49e-57
Seed ortholog2880.D7G631
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGINS complex
Ec32 orthologEc-11_004910.1
TranscriptId36290
TrackFilteredModels1
ProteinId35968
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35968gene_17245Tribonema minus UTEX_B_3156 geneContig_191 131727..137350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35968Trimin1|35968|CE35967_69Tribonema minus UTEX_B_3156 polypeptideContig_191 131776..137335 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17245_4exon_17245_4Tribonema minus UTEX_B_3156 exonContig_191 131727..132021 -
exon_17245_3exon_17245_3Tribonema minus UTEX_B_3156 exonContig_191 133424..133528 -
exon_17245_2exon_17245_2Tribonema minus UTEX_B_3156 exonContig_191 135384..135540 -
exon_17245_1exon_17245_1Tribonema minus UTEX_B_3156 exonContig_191 137115..137350 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17245UTR3_17245Tribonema minus UTEX_B_3156 three_prime_UTRContig_191 131727..131775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17245CDS_17245Tribonema minus UTEX_B_3156 CDSContig_191 137115..137335 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17245UTR5_17245Tribonema minus UTEX_B_3156 five_prime_UTRContig_191 137336..137350 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17245 ID=mRNA_17245|Name=jgi.p|Trimin1|35968|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=793bp|location=Sequence derived from alignment at Contig_191:131727..137350- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTACACCATATCAGGATGGCGTCGCATGGCGTGCCTGAACCCGGCAGCGA
AGCCTCCACCCTCAGGCACTTGTCACCAGACGAACTCGAGTACCTGGCTG
GCGATGAAATGGTGGAGGTGGTGCCCAGCGAGAGCCACAAGAGGCTGCAC
TTTAGAGGGACCTATGGACCTTTTGTGGCGGGGTCTCGGACGGCGGTGCC
GCTGTGGCTGGCGATCATGCTCAAACGACGAAACAAAGCGAGCATCGCGT
GCCCGCCGTGGATGACGGCGGAGAGCCTCGAGCGCGTGCTGGCGGCGGAG
CGGCGCGAGGAGACGTTCGCGGAGCTCCCGTTCCACTACCTGGAAATCTC
CTCGCTGCTGCTGAGCGTTGCCGCGGATGACATGGGGCAGCAGGTGGACA
GGATGCGCGTCCTACTCGAGGACATTGAGAACGTGCGGCAGGGCAAGATG
TACAAGGGCATGGGCGACGCCGCGCAGCGCGCGGATGGCGCTATTAAGGT
CAACCGCATTGGCGCGATGGAGCTGCTGCCCGTGCGCACCTTCTTCAGCG
CAGCGCTCAGCAGCATGTACGACATCTCCGGCGCGAAGGGCCGCGCTGAA
GTGGCGCGCCTGCAGCGCGTCAGCGCCCCTGATGCCATGGGCGGCGCTGC
GCCCAAGGCAGGGGGCGGCGGCGGCCAGTATCAGGGGGATCTGGCGGCGG
CGCCGCCGCCGCAGCAGCAGAGCCGCTTGCGCCGCTTCCGATAGCACCAC
AACTGTTCTTGAGGATGTACATTACATGAAAGTTGTTTTCCCC
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protein sequence of jgi.p|Trimin1|35968

>Trimin1|35968|CE35967_69 ID=Trimin1|35968|CE35967_69|Name=jgi.p|Trimin1|35968|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
MASHGVPEPGSEASTLRHLSPDELEYLAGDEMVEVVPSESHKRLHFRGTY
GPFVAGSRTAVPLWLAIMLKRRNKASIACPPWMTAESLERVLAAERREET
FAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMG
DAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAKGRAEVARLQ
RVSAPDAMGGAAPKAGGGGGQYQGDLAAAPPPQQQSRLRRFR*
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mRNA from alignment at Contig_191:131727..137350-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17245 ID=mRNA_17245|Name=jgi.p|Trimin1|35968|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5624bp|location=Sequence derived from alignment at Contig_191:131727..137350- (Tribonema minus UTEX_B_3156 )
CTACACCATATCAGGATGGCGTCGCATGGCGTGCCTGAACCCGGCAGCGA
AGCCTCCACCCTCAGGCACTTGTCACCAGACGAACTCGAGTACCTGGCTG
GCGATGAAATGGTGGAGGTGGTGCCCAGCGAGAGCCACAAGAGGCTGCAC
TTTAGAGGGACCTATGGACCTTTTGTGGCGGGGTCTCGGACGGCGGTGCC
GCTGTGGCTGGCGATCATGCTCAAACGACGAAACAAGTGAGTGTTGGAAG
TAGTTTGCATCGAGGCAGCGTGGCTGATGTTATTGACATGACCACCAGTA
ACAGGCGCCGCGGGTTGGCAATTTACTTCCGGCACCTTTGCAGTCAGAAG
AGGAAGCCACTGCAAGCACTTCAGCAGGAGCTGAGCGGTGTGTCGAACCC
AATACCTCTTTCTGAATTGTGGATTTGCCCTTGGACATGGAAGTTACATA
AGCAGCGCGCCGTGACGGCGCAGTCATGTACCTAGAGGCCTGGCAATGCA
TTGTCACCACTCACAGCTTCTGAGGGTGTGTCTGGACATGGCAATTGCAC
ATAGAGCTGGAATTGGAGGAGAGGTAATGCACAGAATCACGGCTCCGCAT
TCATACGAGTCTGCAAGGTTGCAAGCAAGCAAGACAGGCCCCCTTCAAAC
TCCTACCATCAGCAAGAAACAACCGTGGTAGCCGGCAACTTTCAACAATC
AAAATTCACATGCCGGAATGTTCATGTCAATTGCCGTCGTGCTGCTCAAG
GCCAAAACACCGTAGCCAGCATGGCCTGCTGGTGATGCTCGACACTGGAA
GCGTGACGCGCCAACAGGCAATTTCAGGCCATGCAGCTCCCAAACATCGA
CGCTGGCGACCTGACGACAGAACATGCTTCTTGTGTGCCGCGTCCCCTTA
AAGCCCTCGCTTTTGAGCCGGTTGCGTATCTGCAGATCTCACTCAGCGCC
CCGCGCACGCAGGTCCGCCGAGCTAGCCTGTCGCAGCGTGTATCCACATG
TTTCTGTAGCAAGCGGCCCCCTGCAGCACGCCATGTCACCGTGTACCAAA
CGCTTGAGGGTTGTCCCCTTTGTTGTACTTGCCAGAGCGAGCATCGCATG
CCCGTTATGGGCCAAACGCTCAGGATGCCCCTCTGTTGCACCCGCGAGCG
TCGCATGCCCGGCGTAAATGACGGCGGCGAGCTTCGAGCGCGCGCTCGCG
ATAGAGCGGAGCTCTGTACCGTTTGAAGCGTACTGTATACTGAGTGAGTC
GCTGAGATGTGAGACATGTGCGGTTCGAAGTGTGCTTTCGTGCTGAGTAA
GTCGCCCAGATTTACACCATTTGCTGCGAAACGATGCCGGTCTGATTTGC
AAGCCAGCGCGAGCATCGCGTGCCCGCCGGGGACGACGGTGGACAGCCTC
GAGCGCGTGCTCACAGCGGAGCGCACATATGTGGTGCTTGAAGTTTGCCG
CGCACTGAGCGGGTTGCTGAGATTTATTACCACCACTAGATCGTCAGCAA
GTTGGAATAAAGGCTTCCAAAAGAAAAAAATACTAAAAACGCCACCTTGT
CAGAAATCAAGAACACAAATCACAATATAGTCTGTTTAAGTATTTCAATA
CTTCTTTGAAGTGTTTATCAATCTGTACCGTTTGCTGCGATACGGTGCTG
TTCTGCGCCAGAGCGAGCATCGCGTGCCCGCTGTGGATGAGGGTGGACAG
CCTCGAGCGCGTGCTCGCGCAGCAGCAATAATATGTGCCGTTCGAAGTGC
GCTGTGTGCAGAGATGTAACCATTCGCTGCGATACGATGCCGTTTTGATT
TGCACGCCAGAGCGAGCATCGCGTGCCCGCCGTGGATGACGGCGGAGAGC
CTCGAGCGCGTGCTGGCGGCGGAGCGGCGCGAGGAGACGTTCGCGGAGCT
CCCGTTCCACTACCTGGAAATCTCCTCGCTGCTGCTGAGCGTTGCCGCGG
ATGACATGGGGCAGCAGGTGCGTCACCTACTTCAACATTAGCTGTAAATC
TGTATGTATAGCGATTGGCGAGAACGCACCTGAATGCGGCGCAAGGAGAC
GTTCGCGGAGCTCCCCTTTCCGTACCTGGAAATCTCTTCGCTGCTGCTGA
GCGTCGCTGCGGACGACATGGGGCAGCAGGTGCGTTCGAGTCAACTTCCT
CACCCACAACTTCTGAAGGGCAATCGTAAAGAATAATTGGAAGCGAAGTG
ACGCAAAGCTGCGCGCTGTGGGCGCCGTATCGCTAACGTCAACCATGGCT
CCCATTCCACTACCTGGAAATTGCCTCGCTGCATCTGAGCGTCGCCGCGG
ACGACATGGGGCAGCAGGTGCGTCACCTACTTCAACATTCCAAGTAAATG
CGATTAGCTGTACTGTAAATCTGTGTGTATAGCGATTAGCGAAAACGCAA
CAGGAAGCGGCGCGAGGACATGTTCGCGGAGCGCCCGTTTCACTACCTGG
AAATTTCCTCGCTGCTGCTGAGCGTCGCTGCGGATGACATGGGGCAGGTG
CGTCACCTGCTTTCACCTTCCGAATAGAAGCGATCAGCTGTAAAAAAATG
TGTGTATAACGATTAGCGAGAACGCAACTGGAAGCAGCGCGAGGAGACGT
TCGCGGAGCTCCCGTTCCACTACCTGGAGATTTCCTCGCTGCTGAGCGTC
GCTGCTGAGCGTCGCTGCGGACGGCAGCAGGTGCGTAGCCTATTTCAACT
CTGAGTGAAAGCGATTGGCTGTACATCTGTGTGTGTAGTGACCAGCGAGA
ACGCAACTAAAAGCAAGGCAAAGATGCCCATCGTGGCAGTCGCACCCTCT
AACCCTAACCCTAACTCGCTGCTGCTGAGCGTCGCCGCGGACGACATGGC
AGGTGTGTTACCTACGCAACCGTTCTCGATCTCAGGTATTAAGCTGTCAA
TCTGTAGGATGCATTATACGAAATCAGTGAGCTGGGAGGCGTAGCGTTAG
GGGTAGGGATTGGGTTAGCAATAGGGTAGCCGGGAGCAGGTCTTAGGGCT
AGGGTTAGGGTTGCTGCGGACAACATGGGGCAGCAGATGCATCCACTTCA
CCGTCGCCGCTCATAAGTGATGAACCATGCGTACGACGAATCAGTAAGAC
GAGTGATGTAGCGTACGCCCGTACAACGAATCAGTAGGAAAACGACTAGT
AGCAACGTGAAGATGCCCATCGCGGGAGCCATATCGCAACCGCGTTTAAA
TCAGTCGCACGTCGAGCGCCGCATACGCTGTTATGGAGCGCCGCACCAGT
CTCAAACAGCCGCGCCTCGTGCGGCAGCGCTGTGGCTTCACAGTTGCCTG
CTGGAATCTGCCCCAATACCTACCTACTGCCCGACGCCATCGTACTCTGA
GGCCGAAACACGTCAATTACTGAGCGGCTTTTAAAGAGGTCACAGCATTG
CCTTGATGCCACCAGCACAGCTTACGCACCCCCGATTCAACTGCGGCAAG
TCTGTCACTTGAGCAGCTTCGAGGCGCCTGATGTCATGCGTGCTGCTGTG
ATATGCGCACCATGGGCGCGCCCATCGCCATTGCCGTCGCCATGAATTCA
GAGCACTGCTGCACCAACTTACCTCGAAGTATGCATTGGTGGAAGGCATT
CAATTTGAATACTAACCACACCTTGTCACCTAGAGCTCTACGATCTGTTG
ATTTGTTTCCATCCATGTATAGGTGGAAGGCATTCAATTTGACGACCAAC
CACACCTTGTCACTTAATAGCAGAGCTCTACGGTCTTTTGATTCGTTTCC
ATGTATACTTCTGAAGTATGTACAATTGTGCCTGAATACTGAGCACTGCT
GCCATTGCCGCGCCTGCCGCAGGTGGACAGGATGCGCGTCCTACTCGAGG
ACATTGAGAACGTGCGGCAGGGCAAGATGTACAAGGGCATGGGCGACGCC
GCGCAGCGCGCGGATGGCGCTATTAAGGTGCTTCGTCTTGACACTTTCCG
AACAGAGCTGTTCATGTCCCGGTGCCCTTGCCCATTTGCTTGTAGCACAG
AGCTATTCAGGTACAAAGGCACTCTACCTTGACGGGTCCACTTTCTTCTT
GGAGTAGACTTGGCGTTGTTCCATGACAGACCCGGTACCATACGCTAAGT
TGACACCCTGCGATCAGCTCGCAACAACTACTGTTTACCGTTCGTGATCC
GAGATTGTCTGCGTGGGTGCCGTGAAATTAGGGTTGAATGTAGCATCAGG
GTTTGGGGTGAGCTCGATGGCAGAATGTGCTTCAGAGCAGCGCTGAGCAA
TTGGTGTGGTAGGCGATGCATGCTTGTGTCACTGAGCCTCAGACGAGGCA
TGGTCATACTGCAACGCGCACAGCGCTTTTGTTATGCGGCTGCGTGTGCT
TCAACGCACGTGTGCCGCTTGCCTGCATCGCAGCTCAGGGATGCCTGAAT
TGGGCGAGTCTCAACTGTAACTCCAGGCACCATACACTTTCACGCCCGGA
AGTTCTTCGACGCCGAGCCCAATACCCCGCGTGGTGCTCGCTTGTTTGCT
GATCACGTCAACTTGAGTGACCATAGTACATACTGTATATGCGTCATCGC
ACACCAGTCCTCTGCGCCACGTCTCAGGGGCCCGGCGGTAGGAAGCCTTG
ACAGGGCTCCCCGCTGAAAATCTGTTCACAGCTATGCGCTGCGGCCTAGC
CCTCACCCTAACCTCAACCCTCAATCTACACCCTCCCTCAGCATCGCATC
GCATGGCAGTGCCTGCGTCCACGCCACATCACTGCCGCTGCTGCCGTACA
TCTGCTGAGCACTGCCCCCTGTGCTGCCACATGCAACAGCAGCGCTCCTC
ACCAGAAGAGCATGGCTCTCGTGACTCCCCACCAGAAGAGCACAGAACTC
GTGACCACTCCGTCCATGGACCAGCAGCAGCTACACTTACTCAAGTCCTC
CGCCACACAGCAGATCTCTCTGCTCGCCAGGCATCGAACCGCGCATGCGC
CCTCCCTCCCTCCCGTGACGCCGCACAGTAAATCTCTCGCACCCCACAAC
TGCCTCACTGCGTGCCCCCCCCCCCCCTCCCTGTGTATTCCCCGTCCCTC
CCTCCCGTCACCCCACACAGTGCATCTCTCTCGCATCCCACATCTGCCTC
ACTGCGTGCCTCCCCTTCCCTCCCATCTCCCGTCCCTCCCTCCCGTGACG
CCACACAATCTCTCTCTCTCGCACCTCACAGATACCTCACTGCGTGCCCC
CCCCCCCCCCTCCCGTGTATCTCCCGTCCCTCCCTCCCGTGACGCCACAC
AAATCGATCTCTCGCACCCCACAAGTACCTCACTGCGCCCCCCCCCCCCC
CCTACCCCCCCTTCCCGCGTGTAACCCAGGTCAACCGCATTGGCGCGATG
GAGCTGCTGCCCGTGCGCACCTTCTTCAGCGCAGCGCTCAGCAGCATGTA
CGACATCTCCGGCGCGAAGGGCCGCGCTGAAGTGGCGCGCCTGCAGCGCG
TCAGCGCCCCTGATGCCATGGGCGGCGCTGCGCCCAAGGCAGGGGGCGGC
GGCGGCCAGTATCAGGGGGATCTGGCGGCGGCGCCGCCGCCGCAGCAGCA
GAGCCGCTTGCGCCGCTTCCGATAGCACCACAACTGTTCTTGAGGATGTA
CATTACATGAAAGTTGTTTTCCCC
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Coding sequence (CDS) from alignment at Contig_191:131727..137350-

>mRNA_17245 ID=mRNA_17245|Name=jgi.p|Trimin1|35968|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_191:131727..137350- (Tribonema minus UTEX_B_3156 )
ATGGCGTCGCATGGCGTGCCTGAACCCGGCAGCGAAGCCTCCACCCTCAG
GCACTTGTCACCAGACGAACTCGAGTACCTGGCTGGCGATGAAATGGTGG
AGGTGGTGCCCAGCGAGAGCCACAAGAGGCTGCACTTTAGAGGGACCTAT
GGACCTTTTGTGGCGGGGTCTCGGACGGCGGTGCCGCTGTGGCTGGCGAT
CATGCTCAAACGACGAAACAAAGCGAGCATCGCGTGCCCGCCGTGGATGA
CGGCGGAGAGCCTCGAGCGCGTGCTGGCGGCGGAGCGGCGCGAGGAGACG
TTCGCGGAGCTCCCGTTCCACTACCTGGAAATCTCCTCGCTGCTGCTGAG
CGTTGCCGCGGATGACATGGGGCAGCAGGTGGACAGGATGCGCGTCCTAC
TCGAGGACATTGAGAACGTGCGGCAGGGCAAGATGTACAAGGGCATGGGC
GACGCCGCGCAGCGCGCGGATGGCGCTATTAAGGTCAACCGCATTGGCGC
GATGGAGCTGCTGCCCGTGCGCACCTTCTTCAGCGCAGCGCTCAGCAGCA
TGTACGACATCTCCGGCGCGAAGGGCCGCGCTGAAGTGGCGCGCCTGCAG
CGCGTCAGCGCCCCTGATGCCATGGGCGGCGCTGCGCCCAAGGCAGGGGG
CGGCGGCGGCCAGTATCAGGGGGATCTGGCGGCGGCGCCGCCGCCGCAGC
AGCAGAGCCGCTTGCGCCGCTTCCGATAG
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