mRNA_15464 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353800
Unique Name	mRNA_15464
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353800 vs. uniprot
Match: A0A835Z4E9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4E9_9STRA)

HSP 1 Score: 504 bits (1297), Expect = 5.470e-174
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 1

Query:    1 MFTGITPLQYAVYRGKVDTIPDILERYPNDINTTDQYGNTALHMAAYRGACRTIDLLREAGAXXXXXXXXXXXXXXXXXXXXAADAAQRQLQRCCMYQALVDYGLSAGDRNSDGKTPLQLCMEFCAPAKKGAMLALLRVALDAEASAPRGETGQRARDXXXXXXXXXXXXXXXXXXXXRSTELPPGQPVEATAPEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPEAATATXXXXTAAEAPTRRRESLHRLPHSAPPALDVAAATTQEADAQRHAALTPAAAMSVRFATEPFAPPLLLPSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGTAQVPVAAVLAAVQRCAALLELQGEDLAALSAQVSRLEITVNRVARAQKRADMSAHAPSG 1344
            MFTGITPLQYAVYRGKVDTIPDILERYPNDINTTDQYGNTALHMAAYRGACRTIDLLREAGAXXXXXXXXXXXXXXXXXXXXAADAAQRQLQRCCMYQALVDYGLSAGDRNSDGKTPLQLCMEFCAPAKKGAMLALLRVALDAEASAPRGETGQRARDXXXXXXXXXXXXXXXXXXXXRSTELPPGQPVEATAPEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPEAATATXXXXTAAEAPTRRRESLHRLPHSAPPALDVAAATTQEADAQRHAALTPAAAMSVRFATEPFAPPLLLPSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGTAQVPVAAVLAAVQRCAALLELQGEDLAALSAQVSRLEITVNRVARAQKRADMSAHAPSG
Sbjct:    1 MFTGITPLQYAVYRGKVDTIPDILERYPNDINTTDQYGNTALHMAAYRGACRTIDLLREAGAXXXXXXXXXXXXXXXXXXXXAADAAQRQLQRCCMYQALVDYGLSAGDRNSDGKTPLQLCMEFCAPAKKGAMLALLRVALDAEASAPRGETGQRARDXXXXXXXXXXXXXXXXXXXXRSTELPPGQPVEATAPEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPEAATATXXXXTAAEAPTRRRESLHRLPHSAPPALDVAAATTQEADAQRHAALTPAAAMSVRFATEPFAPPLLLPSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGTAQVPVAAVLAAVQRCAALLELQGEDLAALSAQVSRLEITVNRVARAQKRADMSAHAPSG 448

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353800 vs. uniprot

BLAST of jgi.p|Trimin1|353800 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z4E9_9STRA	5.470e-174	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_185	contig	Contig_185:49123..52474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353800\|estExt_Genemark1.C_Ctg_1850009
Description	protein ubiquitination
COG category	I
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG0666@1\|root,KOG0504@2759\|Eukaryota
Evalue	2.75e-05
Seed ortholog	2880.D7FI34
Hectar predicted targeting category	other localisation
TranscriptId	354122
Track	FilteredModels1
ProteinId	353800

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353800	gene_15464	Tribonema minus UTEX_B_3156	gene	Contig_185 49123..52474 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353800	Trimin1\|353800\|estExt_Genemark1.C_Ctg_1850009	Tribonema minus UTEX_B_3156	polypeptide	Contig_185 49123..52474 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15464_1	exon_15464_1	Tribonema minus UTEX_B_3156	exon	Contig_185 49123..49199 +
exon_15464_2	exon_15464_2	Tribonema minus UTEX_B_3156	exon	Contig_185 49826..50012 +
exon_15464_3	exon_15464_3	Tribonema minus UTEX_B_3156	exon	Contig_185 50509..50538 +
exon_15464_4	exon_15464_4	Tribonema minus UTEX_B_3156	exon	Contig_185 50772..50934 +
exon_15464_5	exon_15464_5	Tribonema minus UTEX_B_3156	exon	Contig_185 51016..51039 +
exon_15464_6	exon_15464_6	Tribonema minus UTEX_B_3156	exon	Contig_185 51117..51155 +
exon_15464_7	exon_15464_7	Tribonema minus UTEX_B_3156	exon	Contig_185 51648..52474 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15464	CDS_15464	Tribonema minus UTEX_B_3156	CDS	Contig_185 49123..49199 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_185:49123..52474+
coding sequence from alignment at Contig_185:49123..52474+

spliced messenger RNA

>mRNA_15464 ID=mRNA_15464|Name=jgi.p|Trimin1|353800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1347bp|location=Sequence derived from alignment at Contig_185:49123..52474+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACCGGAATTACACCTTTGCAGTATGCGGTGTACAGGGGCAAGGT
CGACACGATTCCAGACATCCTGGAGCGCTACCCCAATGACATCAACACCA
CGGACCAATACGGCAACACAGCGCTGCACATGGCCGCCTACCGCGGCGCG
TGCAGAACCATCGACCTCCTGCGCGAAGCCGGCGCAGACATGCAGGCGCG
CGACGCCCAGGGCAACACGGCGCTGCACGCCGTCGCCGGCACCGGCGCCG
CCGACGCCGCGCAGCGGCAGCTGCAGCGTTGCTGCATGTACCAGGCGCTG
GTCGACTACGGGTTGAGCGCTGGCGACCGCAACAGCGATGGCAAGACCCC
TCTGCAGCTGTGCATGGAGTTCTGCGCACCTGCCAAGAAGGGCGCCATGC
TGGCGCTGCTGCGCGTGGCGCTGGACGCGGAGGCCAGCGCGCCCAGGGGT
GAGACGGGCCAACGCGCCAGGGATCAGGCGGCGCTGGAGGCGGAGGCCGG
CGCCACCAGGGTTGAGACGGGCGATCACGCGCGGCGTTCCACAGAGCTGC
CGCCGGGGCAGCCCGTGGAAGCCACAGCGCCAGAAGTGCCGCCACCACCG
GCGCAGCACGCAGCCGCGGCGGAAACAGCAGCGGCAGCGGGCGCGGCACC
TGAGCAGCTGCAGCGAGAAGCGTCAGCAGTAGAGCCATCTCTGCAGCATG
AGCCGGCAGCGGCAGCGGTGACATCGCCGCCGCCCTCGCCGCGGCAGCCG
CCGGCGGCACGCCAGGCGGCAGCATGCGCAGCAGCAGCGGCAGCAGCAGC
AGCGCCACCAGGACCAGAAGCGGCGACAGCAACGGCAGCGCAGGCTACAG
CAGCTGAGGCTCCCACGCGGCGGAGAGAGTCGCTCCACCGGCTGCCGCAT
TCTGCGCCGCCAGCTCTCGATGTCGCCGCAGCGACGACGCAGGAGGCGGA
CGCGCAGCGGCACGCCGCGCTGACGCCAGCGGCGGCCATGTCGGTGCGGT
TCGCAACGGAGCCCTTCGCACCGCCGCTGCTGCTGCCAAGCGCAGTTGCA
GCGCAAGAGCAGGCACAGTCACCACCGGCGGCGGCGCCACCAGCTGTAGA
AGCAGCAGCAGCAGCAGCAGCAGCAGCTGCGCCGTCAGGGGCGGGGGGCG
GCGCCGCCTGCGGCACGGCTCAGGTGCCAGTGGCGGCGGTGCTGGCAGCC
GTGCAGCGCTGCGCTGCGCTGCTGGAGCTGCAGGGCGAGGACCTGGCAGC
GCTCAGCGCGCAGGTGTCGCGGCTCGAGATCACCGTGAACCGCGTCGCGC
GTGCGCAGAAGCGCGCGGACATGTCCGCGCACGCGCCCAGCGGCTGA

protein sequence of jgi.p|Trimin1|353800

>Trimin1|353800|estExt_Genemark1.C_Ctg_1850009 ID=Trimin1|353800|estExt_Genemark1.C_Ctg_1850009|Name=jgi.p|Trimin1|353800|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=449bp
MFTGITPLQYAVYRGKVDTIPDILERYPNDINTTDQYGNTALHMAAYRGA
CRTIDLLREAGADMQARDAQGNTALHAVAGTGAADAAQRQLQRCCMYQAL
VDYGLSAGDRNSDGKTPLQLCMEFCAPAKKGAMLALLRVALDAEASAPRG
ETGQRARDQAALEAEAGATRVETGDHARRSTELPPGQPVEATAPEVPPPP
AQHAAAAETAAAAGAAPEQLQREASAVEPSLQHEPAAAAVTSPPPSPRQP
PAARQAAACAAAAAAAAAPPGPEAATATAAQATAAEAPTRRRESLHRLPH
SAPPALDVAAATTQEADAQRHAALTPAAAMSVRFATEPFAPPLLLPSAVA
AQEQAQSPPAAAPPAVEAAAAAAAAAAPSGAGGGAACGTAQVPVAAVLAA
VQRCAALLELQGEDLAALSAQVSRLEITVNRVARAQKRADMSAHAPSG*

mRNA from alignment at Contig_185:49123..52474+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15464 ID=mRNA_15464|Name=jgi.p|Trimin1|353800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3352bp|location=Sequence derived from alignment at Contig_185:49123..52474+ (Tribonema minus UTEX_B_3156 )
ATGTTTACCGGAATTACACCTTTGCAGTATGCGGTGTACAGGGGCAAGGT
CGACACGATTCCAGACATCCTGGAGCGGTAAGTGCGCGTTGTTGTTGATT
GCGGGTGCGTGGCGTTTATGCATCGAAGCCTCGAAGAGCGGCTCGAGCGA
CGGTTCTATGAACCAAGCCTGCCGGGTGGGCTGCACGCCTTCGGCCTTGC
ATCGGCATATTTAATCTGCAGCGGCAGCAGGTGTTTGCGGTGATTTCATC
CGCTGTCTGGGTTGCGTGACATGGGCCCTGTGAGCAGATTGGACACCACA
GCTCCGTCCTGCTGAATGTAGCAGTCAGAAGCAAGAATGCCTTGTGAGCT
GCATCAACATGTGCACACAGGCATCACTGCTCGCTTCTCGCACAGTGTCG
TTAGCCCAAATTTCCCGCATGCAAGCTACCCTCAGGCTGCAGTCCTGGCT
CAGTGAGCACGACCAGGTTTAGCACCACCATGGTTTACCTGCTGTAGAAC
CATCAAAATCCTTCATCACTTTCACCAGCACAAACTTCATCGGCAAGCAT
CTGACAAGCACCTGAACAAATCGAACAGGCCCATACGCAGCCACCACTAG
TAGCACTTTGCACACAACCCCACTACGCGACGCGCGCCCACATCACTCCG
AGTCAGACTCTGAGTCCCCCCTCCCCCCTTCTCCCATCAAACACACCGTG
CAGCTACCCCAATGACATCAACACCACGGACCAATACGGCAACACAGCGC
TGCACATGGCCGCCTACCGCGGCGCGTGCAGAACCATCGACCTCCTGCGC
GAAGCCGGCGCAGACATGCAGGCGCGCGACGCCCAGGGCAACACGGCGCT
GCACGCCGTCGCCGGCACCGGCGCCGCCGACGCCGCGCAGGTGCACATTG
TGTCTTACTGTGTTGAGGTTGCCAGTCGAGGTTTGCAGAGTGGTCAGAGA
TGCTGTGAAGGCCGCGTGTTGAGGTTCGTAGTGTCAAGGCACTCATGAAG
TGCGTGAGCCATGCACGCGTCACTGGTGCGGTGCCGGCGCCGTCACTCTT
GCAAGGACGCGCACGCCGCGGCGCGCATGACGCCAGGACCGTGCGATCGC
CTCAGTCCTGGCCAAATGGCCACGCACTCGCTGACGGCGGCAGTGGCGCT
GCGCATGCTGCGAATGCCATGCACGAGTCCGCATGTACGGACTGTGAGGT
CTGGACAAAGTCTGGCAGTATTCACGTGCTGTGATTGCCACATCACCGCA
AGTCTTGTGCCATTCAAGCCCACTCAGCGGCCCACACTCACACTGCAACG
TTAGGGTACAGTTATCTGTCTGCCGTCGCCATTGCTGCCGCCGCTGCCAC
CGCCGCCAACTGCCGCCGCCGCTGCTGCTGCCGCAGCGGCAGCTGCAGCG
TTGCTGCATGTACCAGGTGCGCGGTTCCGCTGCACGGTCGTACATGCCAA
CACGAATTCTGCGTCGCCATTTGCTGTGCCCGCGCACTTCGGCACAGCCA
TGGCGACCCATCCACCATGTACTTTCCGTTCATGCTCGCTCAGGGCGCAG
GAAAGCCCAGATGATTGATATCAAAGCTCGCAATCTACGCGTCACGTGAC
AATCTGAGAGCGTCTCAGTGACCACTGTGTACCTACCTACCCCGCACAGG
CGCTGGTCGACTACGGGTTGAGCGCTGGCGACCGCAACAGCGATGGCAAG
ACCCCTCTGCAGCTGTGCATGGAGTTCTGCGCACCTGCCAAGAAGGGCGC
CATGCTGGCGCTGCTGCGCGTGGCGCTGGACGCGGAGGCCAGCGCGCCCA
GGGGTGAGACGGGTACGTATGCATCCCCATTTTCAGGTATCTTTGCATGT
ACGTACTTCCCCATAGCTGCTGCGCGTGGCGCTGGACGCGGAGGCCAACG
CGCCAGGGATCAGGCGGGTACGTATGTATCCTCACTTCAGGTATCTATGC
ATGTACGTACTTCCCTAGAAGTATGCTGGTGCTGCTGCATGCAGCGCTGG
AGGCGGAGGCCGGCGCCACCAGGGTTGAGACGGGTACGTATGTATTGCTT
CTCACATTGGGGGCTATGCATGCATGTATGCGCAAGTGCTGATATAGCAG
TGCTCAGATCATATGGGTATGCATGTATGCATGTTTGCTGACATGGCAGT
GCTCCATATGAGATGAGCATGCATGAATATGCATGATTGCCGATGCAGCG
CAGCTCAGAGAGCACGAGGTGCGTGTGGACAAGTAGGTAACGCAGCCGCT
CACATGAGGTGCCATGATACGTATGACTGCACACCGCAGCAGCACCAGAT
GAAACGCCAGCACAGCACCGCTAGGGCGAGACTGCTGTGCGCGACGGCCG
ATGCAATGCTGCTGCAGGGGTGCACGCAGATGCAGCCTGCTCCCTAATGC
TAATGCTAACCCTACCCATAGCGCTAGCCATTACCGGCAACTATCCTACA
TGGTGCTGATTTCAGTCTGATTTGCCCAGCGCTTCAAGGGCTGACCATAC
ACATCGTCCATGCCTGTCACCTCAGGCGATCACGCGCGGCGTTCCACAGA
GCTGCCGCCGGGGCAGCCCGTGGAAGCCACAGCGCCAGAAGTGCCGCCAC
CACCGGCGCAGCACGCAGCCGCGGCGGAAACAGCAGCGGCAGCGGGCGCG
GCACCTGAGCAGCTGCAGCGAGAAGCGTCAGCAGTAGAGCCATCTCTGCA
GCATGAGCCGGCAGCGGCAGCGGTGACATCGCCGCCGCCCTCGCCGCGGC
AGCCGCCGGCGGCACGCCAGGCGGCAGCATGCGCAGCAGCAGCGGCAGCA
GCAGCAGCGCCACCAGGACCAGAAGCGGCGACAGCAACGGCAGCGCAGGC
TACAGCAGCTGAGGCTCCCACGCGGCGGAGAGAGTCGCTCCACCGGCTGC
CGCATTCTGCGCCGCCAGCTCTCGATGTCGCCGCAGCGACGACGCAGGAG
GCGGACGCGCAGCGGCACGCCGCGCTGACGCCAGCGGCGGCCATGTCGGT
GCGGTTCGCAACGGAGCCCTTCGCACCGCCGCTGCTGCTGCCAAGCGCAG
TTGCAGCGCAAGAGCAGGCACAGTCACCACCGGCGGCGGCGCCACCAGCT
GTAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCGCCGTCAGGGGCGGG
GGGCGGCGCCGCCTGCGGCACGGCTCAGGTGCCAGTGGCGGCGGTGCTGG
CAGCCGTGCAGCGCTGCGCTGCGCTGCTGGAGCTGCAGGGCGAGGACCTG
GCAGCGCTCAGCGCGCAGGTGTCGCGGCTCGAGATCACCGTGAACCGCGT
CGCGCGTGCGCAGAAGCGCGCGGACATGTCCGCGCACGCGCCCAGCGGCT
GA

Coding sequence (CDS) from alignment at Contig_185:49123..52474+

>mRNA_15464 ID=mRNA_15464|Name=jgi.p|Trimin1|353800|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1347bp|location=Sequence derived from alignment at Contig_185:49123..52474+ (Tribonema minus UTEX_B_3156 )
ATGTTTACCGGAATTACACCTTTGCAGTATGCGGTGTACAGGGGCAAGGT
CGACACGATTCCAGACATCCTGGAGCGCTACCCCAATGACATCAACACCA
CGGACCAATACGGCAACACAGCGCTGCACATGGCCGCCTACCGCGGCGCG
TGCAGAACCATCGACCTCCTGCGCGAAGCCGGCGCAGACATGCAGGCGCG
CGACGCCCAGGGCAACACGGCGCTGCACGCCGTCGCCGGCACCGGCGCCG
CCGACGCCGCGCAGCGGCAGCTGCAGCGTTGCTGCATGTACCAGGCGCTG
GTCGACTACGGGTTGAGCGCTGGCGACCGCAACAGCGATGGCAAGACCCC
TCTGCAGCTGTGCATGGAGTTCTGCGCACCTGCCAAGAAGGGCGCCATGC
TGGCGCTGCTGCGCGTGGCGCTGGACGCGGAGGCCAGCGCGCCCAGGGGT
GAGACGGGCCAACGCGCCAGGGATCAGGCGGCGCTGGAGGCGGAGGCCGG
CGCCACCAGGGTTGAGACGGGCGATCACGCGCGGCGTTCCACAGAGCTGC
CGCCGGGGCAGCCCGTGGAAGCCACAGCGCCAGAAGTGCCGCCACCACCG
GCGCAGCACGCAGCCGCGGCGGAAACAGCAGCGGCAGCGGGCGCGGCACC
TGAGCAGCTGCAGCGAGAAGCGTCAGCAGTAGAGCCATCTCTGCAGCATG
AGCCGGCAGCGGCAGCGGTGACATCGCCGCCGCCCTCGCCGCGGCAGCCG
CCGGCGGCACGCCAGGCGGCAGCATGCGCAGCAGCAGCGGCAGCAGCAGC
AGCGCCACCAGGACCAGAAGCGGCGACAGCAACGGCAGCGCAGGCTACAG
CAGCTGAGGCTCCCACGCGGCGGAGAGAGTCGCTCCACCGGCTGCCGCAT
TCTGCGCCGCCAGCTCTCGATGTCGCCGCAGCGACGACGCAGGAGGCGGA
CGCGCAGCGGCACGCCGCGCTGACGCCAGCGGCGGCCATGTCGGTGCGGT
TCGCAACGGAGCCCTTCGCACCGCCGCTGCTGCTGCCAAGCGCAGTTGCA
GCGCAAGAGCAGGCACAGTCACCACCGGCGGCGGCGCCACCAGCTGTAGA
AGCAGCAGCAGCAGCAGCAGCAGCAGCTGCGCCGTCAGGGGCGGGGGGCG
GCGCCGCCTGCGGCACGGCTCAGGTGCCAGTGGCGGCGGTGCTGGCAGCC
GTGCAGCGCTGCGCTGCGCTGCTGGAGCTGCAGGGCGAGGACCTGGCAGC
GCTCAGCGCGCAGGTGTCGCGGCTCGAGATCACCGTGAACCGCGTCGCGC
GTGCGCAGAAGCGCGCGGACATGTCCGCGCACGCGCCCAGCGGCTGA