Homology
BLAST of jgi.p|Trimin1|353774 vs. uniprot
Match: A0A835Z6V3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V3_9STRA) HSP 1 Score: 487 bits (1254), Expect = 1.060e-170 Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 1 Query: 1 MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD 1038
MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD
Sbjct: 1 MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD 346
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|353774|estExt_Genemark1.C_Ctg_1830014 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 354096 |
| Track | FilteredModels1 |
| ProteinId | 353774 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16695 ID=mRNA_16695|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1041bp|location=Sequence derived from alignment at Contig_183:131115..134149+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGTGCCCGCCAGATTACCCCCACGGAGAGCAGCAGCAGCCAGCCAATCA
GGAGGACGACAAGCAGCCAGACAGCAGCAGTGACCACGATGGCGGCACAT
CCAACAACAGCCTCGACACCATCATGGCTCGCGCCAAGAAGGCAGCCAAT
CACATCTGGCTGCTCCAACATGCGCGCGCCTGCGACGGCAGCTGCGCCAT
CAGAGGACCCGCTGCGTCAGGACCTGGCAGGCGCGGCGGCGCTGATGCGG
CGACGGCGGCGGCGGCAGCGGCTGCACCGGCGGCGCGGCTGTGCCTCATC
TGCAGCCTGGTGGCACGTAACGATGCTCAGTATCAGGCAGCAACAGCTGC
GGCTCGGAGCGCGGGAGGAGGAGAGTCGCCTGGCCTGCGACGGCCCGTGC
CGCGGCCGCGCAGCGTCAGCTACATCGGGCACGACAGGTTGAAGTTGAAA
CTTCAATTTCATCAGCGGCTCAGGATCGACAGCATTGCGGAGGAGCCGAT
GCTGGAGTGCGAGGGCTCCGAGGAAAGTTTTGACGAGGGCGAAGACCATG
AGTACACGCTGTCGTCATCGCCAAACGACAGTACCTGCGGCTCATGCGAC
GGCAACAGCAACCAGAACGTCGTCAGCAGCAGCGGCGGCAGCGGCAGCGG
CAACGGCCACAGGAGCAGCGGCAGCAGCGGCGGCAGCAGCGGCAGCGGCA
GCAGGTATGGACGCAGCAGCAGCAGCGGTGGCAGCGGCAGCTGCAGCAGC
AGCTACAGCAGCAGAAGTGGTGGCGGCGGCAGCAAGAGCGGGGGCAGTGT
GGGCGGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAACACCAGCAGCA
GCGGCCACAGCAGCAGCGGCAGTAGCATCAACGCCAGTATATGGTCGGGT
GCGGCCAACACAGGGCAAGAGACTGCGGAGACGGAACATTCTGCGGAACG
TTATGGGGCGCATGCGCCAAAGGTCTCCGTGTCACGGCTCGACAGAGGCG
GCGAGAGGAGCGCTGCCGTTGGCCGTCGACACGCTGATTAA back to topprotein sequence of jgi.p|Trimin1|353774 >Trimin1|353774|estExt_Genemark1.C_Ctg_1830014 ID=Trimin1|353774|estExt_Genemark1.C_Ctg_1830014|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=347bp
MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAAN
HIWLLQHARACDGSCAIRGPAASGPGRRGGADAATAAAAAAAPAARLCLI
CSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLK
LQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCD
GNSNQNVVSSSGGSGSGNGHRSSGSSGGSSGSGSRYGRSSSSGGSGSCSS
SYSSRSGGGGSKSGGSVGGSSSSSSSGGGNTSSSGHSSSGSSINASIWSG
AANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD* back to topmRNA from alignment at Contig_183:131115..134149+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_16695 ID=mRNA_16695|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3035bp|location=Sequence derived from alignment at Contig_183:131115..134149+ (Tribonema minus UTEX_B_3156 )
ATGTGCCCGCCAGATTACCCCCACGGAGAGCAGCAGCAGCCAGCCAATCA
GGAGGACGACAAGCAGCCAGACAGCAGCAGTGACCACGATGGCGGCACAT
CCAACAACAGCCTCGACACCATCATGGCTCGCGCCAAGAAGGCAGCCAAT
CACATCTGGCTGCTCCAACATGCGCGCGCCTGCGACGGCAGCTGCGCCAT
CAGGTCCTGCGCCGTCGCGCAGCAGCTGCTGCGGCACATGGCGGGCTGCT
CGGAGACTCGCTGCAAACCCTCATGCATGCAGGCGCGGCGGCTGCTGTGC
CACCACGTGCTTTGCAACGCGCCACGCAGAGGACCCGCTGCGTCAGGACC
TGGCAGGCGCGGCGGCGCTGATGCGGCGACGGCGGCGGCGGCAGCGGCTG
CACCGGCGGCGCGGCTGTGCCTCATCTGCAGCCTGGTGGCACGTAACGAT
GCTCAGTATCAGGCAGCAACAGCTGCGGCTCGGAGCGCGGGAGTGCGTGA
AGGCGGCAGTGCTAGCAGTTGCCGCAGGGTGCATTCGGCTTTCGCACTCA
ACAGAGCTTGGCAGCAGCAGCAGGTGCGTGATGTATTTGAGCACTTGCAT
GATGCATGCACAGTGACCATAGCATGATATTATGAGCATGGCTGTGCTTC
ATGCGCAAGATGCATGTCATCAGGAGTTCCACACTGTGGTTGTTCCAGAA
CACAGCACCTTGTGCCTGTCCCCCAGACCATGGGAGTTTTAAACGGAAAA
CTGTGCAACCTGATGCAGCACACAATTACAAGGCTCGTGACGAGACTTGT
TTCACGCTAATTGATCGTCTGCACCGCAGTGATTCAACGTTGGCAAGTTC
ATCATTGGTCGGTGTTCAGGGCAGAAATCCCGGGCCTGCAGCACATGCAA
TTTTCAAAAGGCATGCATTGTTTGATCAATGCTGAAGAGCCCTTGTCGGC
CAACAGTTTTGCAACCTGCAGGCGTCAAGCACAGTACCTTCATCTGGAAG
TTTCGATTGTCCATGCTTGGTGCGCTGGTGCACCAACTTGATGCGTGTTC
GGTCGAGCTATCACGGCGCCATCTCTGGTGAGCCAGTATCGCGGACCTGT
TGATGAAGTTTAATGTTGAAGTTCATTGTCTGCTTCTGAAACCTGCTTGC
AGGGAGGAGAGTCGCCTGGCCTGCGACGGCCCGTGCCGCGGCCGCGCAGC
GTCAGCTACATCGGGCACGACAGGTTGAAGTTGAAACTTCAATTTCATCA
GCGGCTCAGGTGCGTCTCCGCTGCGCAGCACCGGCAGTGCTGTGTCAGGG
CTATGTGAGACTCTGACTCTGACTTGCAGTTGAGCGCTGAGCACTGCTGT
GCGATGCATCAGGCCATCGCATGCGTCCTGTTCCAGTCAGACACACAGCT
GCGCCCTGACTATTGAGCAAGTTCCGGCGCGAAGCTTGTCGAGAAGTACC
ACGCGTGCACTGGGCTCTCCCAAACATGGCACTGCTGTCCGTTTCACGTG
TGCAAAGGTGCTGTGAGCATTGCATGCAATGGGCTCTCAAACCATGGCAC
CGCTGGCTGTCGAACGCGTGTACAAGTGCTGTGGTTGGTGTGGACAGGTG
GATGTGAACTTGCGTGTGAGCTTATCGAAGTTGTCCAAGTTCACGTCTGC
TGGCTGAGCGCTGCTGCAGCTGTCTGCCACCTGAGCAATGCTGCAGCAGC
GTGCGGTGACGCTCCGGTTCATGTACAGAACGTAGATCTGGCGGCAGTGT
GTTTGCCATCTGAGCGATGCTGCTGCTGCAAGCGGTGACGCTCCACTGCA
TACACGACTGAGCTGCTGCGTGCGGTGAAGCTTCACCGCATGCATGACAG
CGGGGGGGCACACTGTGACGCTGCACAGGCAGCATGCCTCAGCTGTCACA
CTGCCAGTCACACTGAACGCAGCGGCTGCAATAGATGCGCTTGTGCCGCA
GGCATCACATTGACTGCGGTATGCAGCACAAAAATGCCTCGGCGACCGCA
ACTTGAAGTGGCATTGCTCGTGATGCAGGTGCTGCGTTGATGCATGTTCA
GTTTCTTGCCCCGCAAGTCTCCACACCTACCGTTTGTGCGCTGTCGCTCT
GGGACAGAGCGCGCACTGTCGCTCTGGGACAGAGCGGTGCCACCACAGCA
TCGTGCACTGGGCACAAGTCACTCACTCACTTGCACCAGGCACAAGCCGC
ACTCTCCCCCTCTATGCATGTACGTACGCTTCCTGAGCGCTGCGGCAAGT
TTAAGTTCCAGTGTAATGTCTCATCAATGGAGTTTTTGTCACGCCGCTGA
GCAGGATCGACAGCGTTGCCGTACCTTGCGGCCAGTCCTACCGTAATGAT
GGTATTTTTGTCTCACCGCTGAGCAGGATTGACAGCATTGCCGTGCCCTG
CGGCCAGTTAAAGTTCCACTGTACTGTCTCATCAACATGGTTGTTCTTTT
GTCTTCCCGCTGCGCAGGATCGACAGCATTGCGGAGGAGCCGATGCTGGA
GTGCGAGGGCTCCGAGGAAAGTTTTGACGAGGGCGAAGACCATGAGTACA
CGCTGTCGTCATCGCCAAACGACAGTACCTGCGGCTCATGCGACGGCAAC
AGCAACCAGAACGTCGTCAGCAGCAGCGGCGGCAGCGGCAGCGGCAACGG
CCACAGGAGCAGCGGCAGCAGCGGCGGCAGCAGCGGCAGCGGCAGCAGGT
ATGGACGCAGCAGCAGCAGCGGTGGCAGCGGCAGCTGCAGCAGCAGCTAC
AGCAGCAGAAGTGGTGGCGGCGGCAGCAAGAGCGGGGGCAGTGTGGGCGG
CAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAACACCAGCAGCAGCGGCC
ACAGCAGCAGCGGCAGTAGCATCAACGCCAGTATATGGTCGGGTGCGGCC
AACACAGGGCAAGAGACTGCGGAGACGGAACATTCTGCGGAACGTTATGG
GGCGCATGCGCCAAAGGTCTCCGTGTCACGGCTCGACAGAGGCGGCGAGA
GGAGCGCTGCCGTTGGCCGTCGACACGCTGATTAA back to topCoding sequence (CDS) from alignment at Contig_183:131115..134149+ >mRNA_16695 ID=mRNA_16695|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1041bp|location=Sequence derived from alignment at Contig_183:131115..134149+ (Tribonema minus UTEX_B_3156 )
ATGTGCCCGCCAGATTACCCCCACGGAGAGCAGCAGCAGCCAGCCAATCA
GGAGGACGACAAGCAGCCAGACAGCAGCAGTGACCACGATGGCGGCACAT
CCAACAACAGCCTCGACACCATCATGGCTCGCGCCAAGAAGGCAGCCAAT
CACATCTGGCTGCTCCAACATGCGCGCGCCTGCGACGGCAGCTGCGCCAT
CAGAGGACCCGCTGCGTCAGGACCTGGCAGGCGCGGCGGCGCTGATGCGG
CGACGGCGGCGGCGGCAGCGGCTGCACCGGCGGCGCGGCTGTGCCTCATC
TGCAGCCTGGTGGCACGTAACGATGCTCAGTATCAGGCAGCAACAGCTGC
GGCTCGGAGCGCGGGAGGAGGAGAGTCGCCTGGCCTGCGACGGCCCGTGC
CGCGGCCGCGCAGCGTCAGCTACATCGGGCACGACAGGTTGAAGTTGAAA
CTTCAATTTCATCAGCGGCTCAGGATCGACAGCATTGCGGAGGAGCCGAT
GCTGGAGTGCGAGGGCTCCGAGGAAAGTTTTGACGAGGGCGAAGACCATG
AGTACACGCTGTCGTCATCGCCAAACGACAGTACCTGCGGCTCATGCGAC
GGCAACAGCAACCAGAACGTCGTCAGCAGCAGCGGCGGCAGCGGCAGCGG
CAACGGCCACAGGAGCAGCGGCAGCAGCGGCGGCAGCAGCGGCAGCGGCA
GCAGGTATGGACGCAGCAGCAGCAGCGGTGGCAGCGGCAGCTGCAGCAGC
AGCTACAGCAGCAGAAGTGGTGGCGGCGGCAGCAAGAGCGGGGGCAGTGT
GGGCGGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAACACCAGCAGCA
GCGGCCACAGCAGCAGCGGCAGTAGCATCAACGCCAGTATATGGTCGGGT
GCGGCCAACACAGGGCAAGAGACTGCGGAGACGGAACATTCTGCGGAACG
TTATGGGGCGCATGCGCCAAAGGTCTCCGTGTCACGGCTCGACAGAGGCG
GCGAGAGGAGCGCTGCCGTTGGCCGTCGACACGCTGATTAA back to top
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