mRNA_16695 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353774
Unique Name	mRNA_16695
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353774 vs. uniprot
Match: A0A835Z6V3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V3_9STRA)

HSP 1 Score: 487 bits (1254), Expect = 1.060e-170
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 1

Query:    1 MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD 1038
            MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD
Sbjct:    1 MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD 346

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353774 vs. uniprot

BLAST of jgi.p|Trimin1|353774 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z6V3_9STRA	1.060e-170	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_183	contig	Contig_183:131115..134149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353774\|estExt_Genemark1.C_Ctg_1830014
Hectar predicted targeting category	other localisation
TranscriptId	354096
Track	FilteredModels1
ProteinId	353774

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353774	gene_16695	Tribonema minus UTEX_B_3156	gene	Contig_183 131115..134149 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16695_1	exon_16695_1	Tribonema minus UTEX_B_3156	exon	Contig_183 131115..131317 +
exon_16695_2	exon_16695_2	Tribonema minus UTEX_B_3156	exon	Contig_183 131444..131606 +
exon_16695_3	exon_16695_3	Tribonema minus UTEX_B_3156	exon	Contig_183 132267..132373 +
exon_16695_4	exon_16695_4	Tribonema minus UTEX_B_3156	exon	Contig_183 133582..134149 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16695	CDS_16695	Tribonema minus UTEX_B_3156	CDS	Contig_183 131115..131317 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353774	Trimin1\|353774\|estExt_Genemark1.C_Ctg_1830014	Tribonema minus UTEX_B_3156	polypeptide	Contig_183 131115..134149 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_183:131115..134149+
coding sequence from alignment at Contig_183:131115..134149+

spliced messenger RNA

>mRNA_16695 ID=mRNA_16695|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1041bp|location=Sequence derived from alignment at Contig_183:131115..134149+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCGCCAGATTACCCCCACGGAGAGCAGCAGCAGCCAGCCAATCA
GGAGGACGACAAGCAGCCAGACAGCAGCAGTGACCACGATGGCGGCACAT
CCAACAACAGCCTCGACACCATCATGGCTCGCGCCAAGAAGGCAGCCAAT
CACATCTGGCTGCTCCAACATGCGCGCGCCTGCGACGGCAGCTGCGCCAT
CAGAGGACCCGCTGCGTCAGGACCTGGCAGGCGCGGCGGCGCTGATGCGG
CGACGGCGGCGGCGGCAGCGGCTGCACCGGCGGCGCGGCTGTGCCTCATC
TGCAGCCTGGTGGCACGTAACGATGCTCAGTATCAGGCAGCAACAGCTGC
GGCTCGGAGCGCGGGAGGAGGAGAGTCGCCTGGCCTGCGACGGCCCGTGC
CGCGGCCGCGCAGCGTCAGCTACATCGGGCACGACAGGTTGAAGTTGAAA
CTTCAATTTCATCAGCGGCTCAGGATCGACAGCATTGCGGAGGAGCCGAT
GCTGGAGTGCGAGGGCTCCGAGGAAAGTTTTGACGAGGGCGAAGACCATG
AGTACACGCTGTCGTCATCGCCAAACGACAGTACCTGCGGCTCATGCGAC
GGCAACAGCAACCAGAACGTCGTCAGCAGCAGCGGCGGCAGCGGCAGCGG
CAACGGCCACAGGAGCAGCGGCAGCAGCGGCGGCAGCAGCGGCAGCGGCA
GCAGGTATGGACGCAGCAGCAGCAGCGGTGGCAGCGGCAGCTGCAGCAGC
AGCTACAGCAGCAGAAGTGGTGGCGGCGGCAGCAAGAGCGGGGGCAGTGT
GGGCGGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAACACCAGCAGCA
GCGGCCACAGCAGCAGCGGCAGTAGCATCAACGCCAGTATATGGTCGGGT
GCGGCCAACACAGGGCAAGAGACTGCGGAGACGGAACATTCTGCGGAACG
TTATGGGGCGCATGCGCCAAAGGTCTCCGTGTCACGGCTCGACAGAGGCG
GCGAGAGGAGCGCTGCCGTTGGCCGTCGACACGCTGATTAA

protein sequence of jgi.p|Trimin1|353774

>Trimin1|353774|estExt_Genemark1.C_Ctg_1830014 ID=Trimin1|353774|estExt_Genemark1.C_Ctg_1830014|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=347bp
MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAAN
HIWLLQHARACDGSCAIRGPAASGPGRRGGADAATAAAAAAAPAARLCLI
CSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLK
LQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCD
GNSNQNVVSSSGGSGSGNGHRSSGSSGGSSGSGSRYGRSSSSGGSGSCSS
SYSSRSGGGGSKSGGSVGGSSSSSSSGGGNTSSSGHSSSGSSINASIWSG
AANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD*

mRNA from alignment at Contig_183:131115..134149+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16695 ID=mRNA_16695|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3035bp|location=Sequence derived from alignment at Contig_183:131115..134149+ (Tribonema minus UTEX_B_3156 )
ATGTGCCCGCCAGATTACCCCCACGGAGAGCAGCAGCAGCCAGCCAATCA
GGAGGACGACAAGCAGCCAGACAGCAGCAGTGACCACGATGGCGGCACAT
CCAACAACAGCCTCGACACCATCATGGCTCGCGCCAAGAAGGCAGCCAAT
CACATCTGGCTGCTCCAACATGCGCGCGCCTGCGACGGCAGCTGCGCCAT
CAGGTCCTGCGCCGTCGCGCAGCAGCTGCTGCGGCACATGGCGGGCTGCT
CGGAGACTCGCTGCAAACCCTCATGCATGCAGGCGCGGCGGCTGCTGTGC
CACCACGTGCTTTGCAACGCGCCACGCAGAGGACCCGCTGCGTCAGGACC
TGGCAGGCGCGGCGGCGCTGATGCGGCGACGGCGGCGGCGGCAGCGGCTG
CACCGGCGGCGCGGCTGTGCCTCATCTGCAGCCTGGTGGCACGTAACGAT
GCTCAGTATCAGGCAGCAACAGCTGCGGCTCGGAGCGCGGGAGTGCGTGA
AGGCGGCAGTGCTAGCAGTTGCCGCAGGGTGCATTCGGCTTTCGCACTCA
ACAGAGCTTGGCAGCAGCAGCAGGTGCGTGATGTATTTGAGCACTTGCAT
GATGCATGCACAGTGACCATAGCATGATATTATGAGCATGGCTGTGCTTC
ATGCGCAAGATGCATGTCATCAGGAGTTCCACACTGTGGTTGTTCCAGAA
CACAGCACCTTGTGCCTGTCCCCCAGACCATGGGAGTTTTAAACGGAAAA
CTGTGCAACCTGATGCAGCACACAATTACAAGGCTCGTGACGAGACTTGT
TTCACGCTAATTGATCGTCTGCACCGCAGTGATTCAACGTTGGCAAGTTC
ATCATTGGTCGGTGTTCAGGGCAGAAATCCCGGGCCTGCAGCACATGCAA
TTTTCAAAAGGCATGCATTGTTTGATCAATGCTGAAGAGCCCTTGTCGGC
CAACAGTTTTGCAACCTGCAGGCGTCAAGCACAGTACCTTCATCTGGAAG
TTTCGATTGTCCATGCTTGGTGCGCTGGTGCACCAACTTGATGCGTGTTC
GGTCGAGCTATCACGGCGCCATCTCTGGTGAGCCAGTATCGCGGACCTGT
TGATGAAGTTTAATGTTGAAGTTCATTGTCTGCTTCTGAAACCTGCTTGC
AGGGAGGAGAGTCGCCTGGCCTGCGACGGCCCGTGCCGCGGCCGCGCAGC
GTCAGCTACATCGGGCACGACAGGTTGAAGTTGAAACTTCAATTTCATCA
GCGGCTCAGGTGCGTCTCCGCTGCGCAGCACCGGCAGTGCTGTGTCAGGG
CTATGTGAGACTCTGACTCTGACTTGCAGTTGAGCGCTGAGCACTGCTGT
GCGATGCATCAGGCCATCGCATGCGTCCTGTTCCAGTCAGACACACAGCT
GCGCCCTGACTATTGAGCAAGTTCCGGCGCGAAGCTTGTCGAGAAGTACC
ACGCGTGCACTGGGCTCTCCCAAACATGGCACTGCTGTCCGTTTCACGTG
TGCAAAGGTGCTGTGAGCATTGCATGCAATGGGCTCTCAAACCATGGCAC
CGCTGGCTGTCGAACGCGTGTACAAGTGCTGTGGTTGGTGTGGACAGGTG
GATGTGAACTTGCGTGTGAGCTTATCGAAGTTGTCCAAGTTCACGTCTGC
TGGCTGAGCGCTGCTGCAGCTGTCTGCCACCTGAGCAATGCTGCAGCAGC
GTGCGGTGACGCTCCGGTTCATGTACAGAACGTAGATCTGGCGGCAGTGT
GTTTGCCATCTGAGCGATGCTGCTGCTGCAAGCGGTGACGCTCCACTGCA
TACACGACTGAGCTGCTGCGTGCGGTGAAGCTTCACCGCATGCATGACAG
CGGGGGGGCACACTGTGACGCTGCACAGGCAGCATGCCTCAGCTGTCACA
CTGCCAGTCACACTGAACGCAGCGGCTGCAATAGATGCGCTTGTGCCGCA
GGCATCACATTGACTGCGGTATGCAGCACAAAAATGCCTCGGCGACCGCA
ACTTGAAGTGGCATTGCTCGTGATGCAGGTGCTGCGTTGATGCATGTTCA
GTTTCTTGCCCCGCAAGTCTCCACACCTACCGTTTGTGCGCTGTCGCTCT
GGGACAGAGCGCGCACTGTCGCTCTGGGACAGAGCGGTGCCACCACAGCA
TCGTGCACTGGGCACAAGTCACTCACTCACTTGCACCAGGCACAAGCCGC
ACTCTCCCCCTCTATGCATGTACGTACGCTTCCTGAGCGCTGCGGCAAGT
TTAAGTTCCAGTGTAATGTCTCATCAATGGAGTTTTTGTCACGCCGCTGA
GCAGGATCGACAGCGTTGCCGTACCTTGCGGCCAGTCCTACCGTAATGAT
GGTATTTTTGTCTCACCGCTGAGCAGGATTGACAGCATTGCCGTGCCCTG
CGGCCAGTTAAAGTTCCACTGTACTGTCTCATCAACATGGTTGTTCTTTT
GTCTTCCCGCTGCGCAGGATCGACAGCATTGCGGAGGAGCCGATGCTGGA
GTGCGAGGGCTCCGAGGAAAGTTTTGACGAGGGCGAAGACCATGAGTACA
CGCTGTCGTCATCGCCAAACGACAGTACCTGCGGCTCATGCGACGGCAAC
AGCAACCAGAACGTCGTCAGCAGCAGCGGCGGCAGCGGCAGCGGCAACGG
CCACAGGAGCAGCGGCAGCAGCGGCGGCAGCAGCGGCAGCGGCAGCAGGT
ATGGACGCAGCAGCAGCAGCGGTGGCAGCGGCAGCTGCAGCAGCAGCTAC
AGCAGCAGAAGTGGTGGCGGCGGCAGCAAGAGCGGGGGCAGTGTGGGCGG
CAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAACACCAGCAGCAGCGGCC
ACAGCAGCAGCGGCAGTAGCATCAACGCCAGTATATGGTCGGGTGCGGCC
AACACAGGGCAAGAGACTGCGGAGACGGAACATTCTGCGGAACGTTATGG
GGCGCATGCGCCAAAGGTCTCCGTGTCACGGCTCGACAGAGGCGGCGAGA
GGAGCGCTGCCGTTGGCCGTCGACACGCTGATTAA

Coding sequence (CDS) from alignment at Contig_183:131115..134149+

>mRNA_16695 ID=mRNA_16695|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1041bp|location=Sequence derived from alignment at Contig_183:131115..134149+ (Tribonema minus UTEX_B_3156 )
ATGTGCCCGCCAGATTACCCCCACGGAGAGCAGCAGCAGCCAGCCAATCA
GGAGGACGACAAGCAGCCAGACAGCAGCAGTGACCACGATGGCGGCACAT
CCAACAACAGCCTCGACACCATCATGGCTCGCGCCAAGAAGGCAGCCAAT
CACATCTGGCTGCTCCAACATGCGCGCGCCTGCGACGGCAGCTGCGCCAT
CAGAGGACCCGCTGCGTCAGGACCTGGCAGGCGCGGCGGCGCTGATGCGG
CGACGGCGGCGGCGGCAGCGGCTGCACCGGCGGCGCGGCTGTGCCTCATC
TGCAGCCTGGTGGCACGTAACGATGCTCAGTATCAGGCAGCAACAGCTGC
GGCTCGGAGCGCGGGAGGAGGAGAGTCGCCTGGCCTGCGACGGCCCGTGC
CGCGGCCGCGCAGCGTCAGCTACATCGGGCACGACAGGTTGAAGTTGAAA
CTTCAATTTCATCAGCGGCTCAGGATCGACAGCATTGCGGAGGAGCCGAT
GCTGGAGTGCGAGGGCTCCGAGGAAAGTTTTGACGAGGGCGAAGACCATG
AGTACACGCTGTCGTCATCGCCAAACGACAGTACCTGCGGCTCATGCGAC
GGCAACAGCAACCAGAACGTCGTCAGCAGCAGCGGCGGCAGCGGCAGCGG
CAACGGCCACAGGAGCAGCGGCAGCAGCGGCGGCAGCAGCGGCAGCGGCA
GCAGGTATGGACGCAGCAGCAGCAGCGGTGGCAGCGGCAGCTGCAGCAGC
AGCTACAGCAGCAGAAGTGGTGGCGGCGGCAGCAAGAGCGGGGGCAGTGT
GGGCGGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAACACCAGCAGCA
GCGGCCACAGCAGCAGCGGCAGTAGCATCAACGCCAGTATATGGTCGGGT
GCGGCCAACACAGGGCAAGAGACTGCGGAGACGGAACATTCTGCGGAACG
TTATGGGGCGCATGCGCCAAAGGTCTCCGTGTCACGGCTCGACAGAGGCG
GCGAGAGGAGCGCTGCCGTTGGCCGTCGACACGCTGATTAA