mRNA_1251 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347993
Unique NamemRNA_1251
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: A0A836CJ66_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ66_9STRA)

HSP 1 Score: 1371 bits (3548), Expect = 0.000e+0
Identity = 771/771 (100.00%), Postives = 771/771 (100.00%), Query Frame = 1 
Query:    1 MDRRKRTSLEAMVDAKNEELRRMLLDKKAMLAEEHKVRERLSRDHANTIHQISNIETAIRRLRADHLASVEAQQAASRAELSVLEQEVAAMNKQRLALERYVVTFDIVDQEHATLKARLRSLKESEGKEAQENAAELEGLKSSVFQLRTRLDEVFRKTLAAVQGQTKDSAMVEVLQEAREAHDHAAQLAKTLKARTATVARVLQAHAQSRRALMQVRVDRDITADTVKAQADRISALDAAVAAQEADVTRRERELQVALTRQAQLATESADLQRLGGEVTAAQRACAAARDRAVKARHRALRAARAGGGGVSSSGMQRSLSLPALRRSGIDTVDTESDRDYKAAEERFLVFRAQLLEIIQNTEQFRSRLKESIAVASKLSQNFLKVSQGEGDSGVALDELLFVDLDKYVLSDLKIQHESYNDINKLVKERYELKVELQHYSDKVQELNDNPKVAAERKVRNEEKYATANTRLREQTDALLRRFAESEVRRRRVLEEDLPRIMDLKRLAYAALATNAEKAAQGLVLAPMRSGSRGSSSAFGSKDLPGSARGSYDNTVTGQGAESARMSDVPLGGTSSQRTSVNTDHGASSHALTAKPAAAALLDSPPSHLYKRASGSMESVQPGGNAGGVVGQSSHSGSAAAAASEDVVSTRTALEQNMGATAVPVSQEVFHEASYEQEQEPVTAAATPEANAADANASRTEPEVVDGGLGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERID 2313
            MDRRKRTSLEAMVDAKNEELRRMLLDKKAMLAEEHKVRERLSRDHANTIHQISNIETAIRRLRADHLASVEAQQAASRAELSVLEQEVAAMNKQRLALERYVVTFDIVDQEHATLKARLRSLKESEGKEAQENAAELEGLKSSVFQLRTRLDEVFRKTLAAVQGQTKDSAMVEVLQEAREAHDHAAQLAKTLKARTATVARVLQAHAQSRRALMQVRVDRDITADTVKAQADRISALDAAVAAQEADVTRRERELQVALTRQAQLATESADLQRLGGEVTAAQRACAAARDRAVKARHRALRAARAGGGGVSSSGMQRSLSLPALRRSGIDTVDTESDRDYKAAEERFLVFRAQLLEIIQNTEQFRSRLKESIAVASKLSQNFLKVSQGEGDSGVALDELLFVDLDKYVLSDLKIQHESYNDINKLVKERYELKVELQHYSDKVQELNDNPKVAAERKVRNEEKYATANTRLREQTDALLRRFAESEVRRRRVLEEDLPRIMDLKRLAYAALATNAEKAAQGLVLAPMRSGSRGSSSAFGSKDLPGSARGSYDNTVTGQGAESARMSDVPLGGTSSQRTSVNTDHGASSHALTAKPAAAALLDSPPSHLYKRASGSMESVQPGGNAGGVVGQSSHSGSAAAAASEDVVSTRTALEQNMGATAVPVSQEVFHEASYEQEQEPVTAAATPEANAADANASRTEPEVVDGGLGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERID
Sbjct:    1 MDRRKRTSLEAMVDAKNEELRRMLLDKKAMLAEEHKVRERLSRDHANTIHQISNIETAIRRLRADHLASVEAQQAASRAELSVLEQEVAAMNKQRLALERYVVTFDIVDQEHATLKARLRSLKESEGKEAQENAAELEGLKSSVFQLRTRLDEVFRKTLAAVQGQTKDSAMVEVLQEAREAHDHAAQLAKTLKARTATVARVLQAHAQSRRALMQVRVDRDITADTVKAQADRISALDAAVAAQEADVTRRERELQVALTRQAQLATESADLQRLGGEVTAAQRACAAARDRAVKARHRALRAARAGGGGVSSSGMQRSLSLPALRRSGIDTVDTESDRDYKAAEERFLVFRAQLLEIIQNTEQFRSRLKESIAVASKLSQNFLKVSQGEGDSGVALDELLFVDLDKYVLSDLKIQHESYNDINKLVKERYELKVELQHYSDKVQELNDNPKVAAERKVRNEEKYATANTRLREQTDALLRRFAESEVRRRRVLEEDLPRIMDLKRLAYAALATNAEKAAQGLVLAPMRSGSRGSSSAFGSKDLPGSARGSYDNTVTGQGAESARMSDVPLGGTSSQRTSVNTDHGASSHALTAKPAAAALLDSPPSHLYKRASGSMESVQPGGNAGGVVGQSSHSGSAAAAASEDVVSTRTALEQNMGATAVPVSQEVFHEASYEQEQEPVTAAATPEANAADANASRTEPEVVDGGLGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERID 771
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: A0A835Z3B5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B5_9STRA)

HSP 1 Score: 212 bits (540), Expect = 5.550e-60
Identity = 117/195 (60.00%), Postives = 146/195 (74.87%), Query Frame = 1 
Query: 1072 IIQNTEQFRSRLKESIAVASKLSQNFLKVSQGE-------------------------GDSGVALDELLFVDLDKYVLSDLKIQHESYNDINKLVKERYELKVELQHYSDKVQELNDNPKVAAERKVRNEEKYATANTRLREQTDALLRRFAESEVRRRRVLEEDLPRIMDLKRLAYAALATNAEKAAQGLVLAP 1581
            +I N E FR++LKES  +ASKL+ NF+++SQG+                          DS + ++++L++D+D+++LSDLK Q ESY+DINKLVKERYELKVELQHYSDKVQELN NPK   E+KVRN EKYATAN +LREQTDAL+RRFAE+E+RRRRVLEEDLPR+MDL R  Y A+A NA KAAQG+ LAP
Sbjct:    1 MITNAEHFRAKLKESAGLASKLAHNFMRMSQGDVGEGEPEEAWMTTAKRQSEVLKTTTADSALVVEQVLYIDMDQFLLSDLKAQLESYSDINKLVKERYELKVELQHYSDKVQELNFNPKATEEKKVRNAEKYATANNKLREQTDALMRRFAEAELRRRRVLEEDLPRLMDLHRSTYEAMAANALKAAQGITLAP 195
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: D8LEH1_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH1_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 7.740e-38
Identity = 155/519 (29.87%), Postives = 242/519 (46.63%), Query Frame = 1 
Query:  997 VDTESDRDYKAAEERFLVFRAQLLEIIQNTEQFRSRLKESIAVASKLSQNFLKVSQGEG------------------------DSGVALDELLFVDLDKYVLSDLKIQHESYNDINKLVKERYELKVELQHYSDKVQELNDNPKVAAERKVRNEEKYATANTRLREQTDALLRRFAESEVRRRRVLEEDLPRIMDLKRLAYAALATNAEKAA--------------------QGLVLAPMRSGSRGSSSAFGSKDLPGSARGSYDNTVTGQGAESARM----------------------SDVPLGGTSSQRTSVNTDHGASSHALTAKPAAAALLDSPPSHLYKRASGSMESVQPGGNAGGVVGQSSHSGSAAAAASEDVVSTRTALEQNMGATAVPVSQEVFHEASYEQEQEPVTAAATPEANAADANASRTEP-EVVDGG----------------LGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTE 2304
            +D + D++Y +A ERFL F+ QL  ++ +T+ FR  L+ES+  A +L+ +F +V+ G G                        +S V+L + L  +L++ V+  L+ +  +++ ++  + ER  +K+E+ HYS+KVQEL  + K   E+K RN+EKYA A+  LR+QT+ L+  FA +E  R+R+L +D P ++  ++ A+ A A N  KAA                    Q   ++P   G+  S S  G  +     + ++++  +   AESA                        +D P   T+S  +  +    A  H     P+ AA L +P     K A+   ES +P   A  V  +++ +GS     S D                               E E +TAA    A A +A+A   E  E V G                 L PG +RVRALYD+EA +EGDL+F   D+I+TD   +S DGWV+GTC+G TG FP+NYTE
Sbjct:   36 LDADEDQNYVSASERFLEFQTQLGMVLHHTQLFRKTLEESLQHAVELADDFGRVAAGNGGGRTMEPWAQKAGGQAFFLKGMLEESAVSLRQHLCDELEEKVVRSLREEVANFSTVHTQMLERSNMKMEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFPSVITAEKNAFDAFAINLNKAAAETSDGEPRPPRMSDAARAPQRTPMSPKDGGAPWSGSNDGG-EFGEELKRAHEHQNSKMAAESAXXXXXXXXXXXXXXXXXXXXXXXXADTPAM-TNSSTSGADAADDAEKH----DPSEAAALAAPAPAGEKDATAPTESPKPPAAAATVDDEAAVAGSGPKTDSPD------------------------------DEAEALTAAVPAMATAPEASAPGEEQAEEVPGXXXXXXXXXXXXXXXXXLEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 518
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: A0A835Z502_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z502_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.070e-25
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query: 2047 TAAATPEANAADANASRTEPEVVDGG-----------LGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERID 2313
            T A +PE +A D   +  +P    GG           L PG++RVRAL+DFEAA+ GDLNFKA DII+T++++W  DGWV G CNGQTGQFPSNYTERID
Sbjct:   45 TVATSPEQDA-DGQENPADPGSAGGGPPMLAQSDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID 143
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: UPI000644A38D (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A38D)

HSP 1 Score: 67.4 bits (163), Expect = 4.690e-8
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1 
Query: 2119 GGLGPGYMRVRALYDFEAAEEGDLNFKANDII-VTDASRWSADGWVTGTCNGQTGQFPSNYTERI 2310
            GG   GY + +ALYD+EAA+EGDL+F A DII + D S   A+GW  G C G TG FPS + + +
Sbjct:  316 GGDASGYPQAKALYDYEAAQEGDLSFYAGDIISIHDQS--DANGWWVGECQGFTGTFPSTFVQLV 378
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: F2U5Y3_SALR5 (Endophilin n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U5Y3_SALR5)

HSP 1 Score: 66.2 bits (160), Expect = 7.770e-8
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query: 2101 EPEVVDGGLGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERI 2310
            E E      G G +R RALYD++A EEG+L F   DII TD  +   +GW  G CNGQ G FP+NY E I
Sbjct:  260 EQEQQQAAEGGGGLRARALYDYQADEEGELTFDPGDII-TDIEQID-EGWWQGACNGQFGLFPANYVELI 327
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: A0A8H6XFV9_9AGAR (DUF500-domain-containing protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6XFV9_9AGAR)

HSP 1 Score: 65.5 bits (158), Expect = 2.760e-7
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query: 2134 GYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERI 2310
            G  RV A+YDF+AA+ GDL+F   D+IV      S D W TGT +G+ G FP+N+TE +
Sbjct:  410 GVARVIAMYDFKAAQPGDLSFSKGDVIVVTKRSESTDDWWTGTLDGRKGIFPANFTEVV 468
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: A0A6P8H3N2_ACTTE (uncharacterized protein LOC116287529 isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H3N2_ACTTE)

HSP 1 Score: 63.9 bits (154), Expect = 7.780e-7
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query: 2152 ALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERID*Y 2319
            ALYD++A EE D+ F   DII         +GW +GTCNGQTG FPSNY E++  Y
Sbjct:  151 ALYDYQAIEENDITFDPGDIITN--IEVIDEGWWSGTCNGQTGWFPSNYVEKLQEY 204
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: A0A182VSJ4_9DIPT (Uncharacterized protein n=1 Tax=Anopheles minimus TaxID=112268 RepID=A0A182VSJ4_9DIPT)

HSP 1 Score: 64.3 bits (155), Expect = 1.100e-6
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 1 
Query: 2131 PGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERID 2313
            PGYM+ RA+Y+F A    +++F+  DI++    + +  GW+ G  NG TG FP ++ E++D
Sbjct:  724 PGYMKYRAIYEFNARNSDEISFQPGDIVMVPLEQNAEPGWLAGEINGHTGWFPESFVEKVD 784
[Close]
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Match: A0A182RWF0_ANOFN (Uncharacterized protein n=1 Tax=Anopheles funestus TaxID=62324 RepID=A0A182RWF0_ANOFN)

HSP 1 Score: 64.3 bits (155), Expect = 1.110e-6
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 1 
Query: 2131 PGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERID 2313
            PGYM+ RA+Y+F A    +++F+  DI++    + +  GW+ G  NG TG FP ++ E++D
Sbjct:  760 PGYMKYRAIYEFNARNNDEISFQPGDIVMVPLEQNAEPGWLAGEINGHTGWFPESFVEKVD 820
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347993 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ66_9STRA0.000e+0100.00SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z3B5_9STRA5.550e-6060.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LEH1_ECTSI7.740e-3829.87SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z502_9STRA3.070e-2556.00SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
UPI000644A38D4.690e-850.77hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F2U5Y3_SALR57.770e-850.00Endophilin n=1 Tax=Salpingoeca rosetta (strain ATC... [more]
A0A8H6XFV9_9AGAR2.760e-749.15DUF500-domain-containing protein n=1 Tax=Mycena ve... [more]
A0A6P8H3N2_ACTTE7.780e-751.79uncharacterized protein LOC116287529 isoform X1 n=... [more]
A0A182VSJ4_9DIPT1.100e-637.70Uncharacterized protein n=1 Tax=Anopheles minimus ... [more]
A0A182RWF0_ANOFN1.110e-637.70Uncharacterized protein n=1 Tax=Anopheles funestus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:125805..136723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347993|estExt_Genemark1.C_Ctg_180014
BRITEko00000,ko00001,ko03021,ko03036,ko04131
KEGG Pathwayko04144,ko04714,ko05225,map04144,map04714,map05225
KEGG koko:K11247,ko:K11650,ko:K20047
Descriptionintracellular protein transport
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2199@1|root,KOG2199@2759|Eukaryota
Evalue5.32e-39
Seed ortholog2880.D8LEH1
Hectar predicted targeting categoryother localisation
TranscriptId348315
TrackFilteredModels1
ProteinId347993
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347993gene_1251Tribonema minus UTEX_B_3156 geneContig_18 125805..136723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347993Trimin1|347993|estExt_Genemark1.C_Ctg_180014Tribonema minus UTEX_B_3156 polypeptideContig_18 126205..136723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1251_14exon_1251_14Tribonema minus UTEX_B_3156 exonContig_18 125805..126385 -
exon_1251_13exon_1251_13Tribonema minus UTEX_B_3156 exonContig_18 126771..126877 -
exon_1251_12exon_1251_12Tribonema minus UTEX_B_3156 exonContig_18 127347..127410 -
exon_1251_11exon_1251_11Tribonema minus UTEX_B_3156 exonContig_18 127779..127907 -
exon_1251_10exon_1251_10Tribonema minus UTEX_B_3156 exonContig_18 128508..128629 -
exon_1251_9exon_1251_9Tribonema minus UTEX_B_3156 exonContig_18 129609..129738 -
exon_1251_8exon_1251_8Tribonema minus UTEX_B_3156 exonContig_18 130871..131124 -
exon_1251_7exon_1251_7Tribonema minus UTEX_B_3156 exonContig_18 131508..131665 -
exon_1251_6exon_1251_6Tribonema minus UTEX_B_3156 exonContig_18 132844..132943 -
exon_1251_5exon_1251_5Tribonema minus UTEX_B_3156 exonContig_18 133395..133477 -
exon_1251_4exon_1251_4Tribonema minus UTEX_B_3156 exonContig_18 134263..134605 -
exon_1251_3exon_1251_3Tribonema minus UTEX_B_3156 exonContig_18 135039..135194 -
exon_1251_2exon_1251_2Tribonema minus UTEX_B_3156 exonContig_18 135781..136062 -
exon_1251_1exon_1251_1Tribonema minus UTEX_B_3156 exonContig_18 136517..136723 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1251UTR3_1251Tribonema minus UTEX_B_3156 three_prime_UTRContig_18 125805..126204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1251CDS_1251Tribonema minus UTEX_B_3156 CDSContig_18 136517..136723 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1251 ID=mRNA_1251|Name=jgi.p|Trimin1|347993|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2716bp|location=Sequence derived from alignment at Contig_18:125805..136723- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGGCGTAAGCGCACGTCACTGGAAGCCATGGTGGACGCCAAGAA
CGAGGAGCTTCGGCGCATGCTGCTGGACAAAAAAGCCATGCTGGCGGAGG
AGCACAAAGTGAGGGAGAGGCTGAGCAGAGACCACGCCAACACCATACAC
CAGATTTCCAACATCGAGACGGCGATACGAAGGCTGAGGGCTGATCATCT
GGCATCGGTGGAGGCTCAGCAGGCGGCGTCACGAGCGGAGCTCTCCGTTC
TAGAGCAGGAGGTAGCCGCCATGAACAAGCAGCGCCTGGCACTGGAGCGC
TATGTGGTGACATTTGACATCGTGGACCAGGAGCACGCTACGCTCAAAGC
GCGGCTGAGATCCCTGAAGGAGAGCGAGGGCAAGGAGGCCCAGGAGAACG
CGGCGGAGCTTGAGGGCCTCAAGAGCAGCGTGTTTCAGTTGCGCACGAGG
CTGGATGAGGTGTTCCGAAAGACGCTCGCTGCGGTACAGGGCCAAACAAA
AGACAGCGCGATGGTGGAGGTGCTGCAGGAGGCGCGCGAGGCTCATGACC
ACGCCGCGCAGCTGGCCAAGACGCTCAAAGCGCGCACGGCCACCGTAGCG
CGCGTCCTGCAGGCGCACGCCCAGAGCAGACGCGCCCTCATGCAGGTCCG
CGTGGACAGGGACATCACGGCGGACACCGTCAAGGCCCAGGCTGACAGAA
TATCGGCCCTCGACGCGGCGGTCGCCGCACAGGAGGCAGATGTCACCCGC
CGCGAGCGCGAACTTCAAGTGGCACTGACGCGCCAAGCGCAGCTGGCCAC
GGAGTCGGCCGATCTGCAGCGGCTGGGGGGGGAGGTGACGGCGGCGCAGC
GCGCGTGCGCGGCGGCGCGGGATCGCGCGGTGAAGGCGCGGCACCGCGCG
CTGCGCGCCGCGCGGGCGGGCGGCGGCGGCGTCAGCAGCAGCGGCATGCA
GCGGTCGCTCTCGCTGCCGGCGCTGCGGCGGAGCGGCATTGACACGGTGG
ACACGGAAAGCGATAGGGACTACAAGGCTGCGGAGGAGCGATTTCTTGTG
TTCCGCGCACAGCTGCTCGAGATTATCCAAAACACGGAGCAGTTTCGCTC
AAGGCTGAAGGAGTCCATAGCTGTCGCATCCAAGCTGTCCCAGAACTTCT
TGAAAGTCAGTCAAGGGGAGGGCGACAGCGGCGTGGCGTTGGATGAGCTG
CTGTTTGTGGACCTGGACAAGTACGTGCTGTCCGATCTGAAGATACAGCA
CGAGAGCTACAACGACATCAACAAGCTGGTGAAGGAGCGCTATGAGCTCA
AGGTGGAGCTGCAGCACTACAGTGACAAGGTCCAGGAGCTCAACGACAAC
CCCAAGGTCGCGGCGGAGCGCAAGGTGCGCAACGAGGAGAAGTACGCCAC
GGCCAACACGCGCCTGCGCGAGCAGACGGACGCGCTGCTGCGGCGCTTTG
CCGAGTCGGAGGTGCGGCGGCGGCGCGTCCTCGAGGAGGACCTGCCGCGC
ATCATGGACCTAAAGCGCCTGGCGTACGCGGCGCTGGCGACCAACGCCGA
GAAGGCCGCGCAGGGCCTCGTGCTGGCGCCCATGCGCTCCGGCTCAAGGG
GTTCAAGCTCTGCATTCGGCTCAAAAGACCTGCCAGGGTCAGCGCGCGGC
AGCTACGACAACACTGTCACGGGACAGGGCGCAGAGAGCGCGCGCATGTC
AGATGTGCCATTGGGGGGCACCTCGTCTCAGCGCACGTCTGTCAACACGG
ACCATGGCGCCAGCTCGCATGCGCTGACTGCCAAGCCCGCCGCCGCCGCT
CTGCTCGACTCCCCGCCGTCGCACCTGTATAAGCGTGCAAGCGGCTCCAT
GGAGAGCGTGCAGCCCGGTGGCAACGCGGGCGGGGTCGTGGGGCAGTCCT
CTCACAGCGGTTCGGCGGCAGCGGCGGCGTCAGAGGATGTCGTCAGCACA
CGCACAGCGCTAGAGCAAAACATGGGCGCCACCGCTGTCCCCGTCAGCCA
GGAAGTGTTCCACGAGGCGTCCTATGAGCAGGAACAGGAGCCGGTAACCG
CTGCTGCCACGCCTGAGGCAAATGCTGCGGACGCAAACGCGTCGCGCACT
GAACCAGAGGTGGTCGACGGCGGCCTCGGACCAGGGTACATGAGGGTGAG
GGCGCTGTACGACTTTGAGGCCGCCGAGGAGGGCGACCTCAACTTCAAGG
CCAACGACATCATTGTGACCGACGCGTCGCGGTGGAGCGCGGATGGCTGG
GTCACGGGCACATGTAACGGCCAGACGGGGCAGTTCCCGTCCAACTACAC
GGAGCGCATCGACTGATACACATGTCAACGCATATGTCAATGCATATGTC
AACACACATGTCAAGTGTTGACGTATGTCAATACATATGTCAACACACAT
GTCATATGGTGTCGCCGCACGCTCACGCGACGCGCGGGGGCGCTAGCGCC
TGTCGGCTCTGTCACAGCCCCCATCTTTTCCTCTCCAGAGGGGCATGCAA
AGCGGCTCAGCGGCCGGTTTCGCTCGGTCAGCTGCCTGCCGCAGGGGTGT
GTGTTGTGTGTGGCTGGAGGGCTGCTGCGACACTGCCGGCGCATGCCTTT
TGTGCTCTCGTCGTGAGTCGGGCAGGCGCTGCGAGCTGGACTTGTTTATC
GTGGTTTCAGCCGTCGTGTTGAGCGGGGGGGGGGGGGCACACAAGGATAC
TTCTACAGGGGTGGGG
back to top

protein sequence of jgi.p|Trimin1|347993

>Trimin1|347993|estExt_Genemark1.C_Ctg_180014 ID=Trimin1|347993|estExt_Genemark1.C_Ctg_180014|Name=jgi.p|Trimin1|347993|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=772bp
MDRRKRTSLEAMVDAKNEELRRMLLDKKAMLAEEHKVRERLSRDHANTIH
QISNIETAIRRLRADHLASVEAQQAASRAELSVLEQEVAAMNKQRLALER
YVVTFDIVDQEHATLKARLRSLKESEGKEAQENAAELEGLKSSVFQLRTR
LDEVFRKTLAAVQGQTKDSAMVEVLQEAREAHDHAAQLAKTLKARTATVA
RVLQAHAQSRRALMQVRVDRDITADTVKAQADRISALDAAVAAQEADVTR
RERELQVALTRQAQLATESADLQRLGGEVTAAQRACAAARDRAVKARHRA
LRAARAGGGGVSSSGMQRSLSLPALRRSGIDTVDTESDRDYKAAEERFLV
FRAQLLEIIQNTEQFRSRLKESIAVASKLSQNFLKVSQGEGDSGVALDEL
LFVDLDKYVLSDLKIQHESYNDINKLVKERYELKVELQHYSDKVQELNDN
PKVAAERKVRNEEKYATANTRLREQTDALLRRFAESEVRRRRVLEEDLPR
IMDLKRLAYAALATNAEKAAQGLVLAPMRSGSRGSSSAFGSKDLPGSARG
SYDNTVTGQGAESARMSDVPLGGTSSQRTSVNTDHGASSHALTAKPAAAA
LLDSPPSHLYKRASGSMESVQPGGNAGGVVGQSSHSGSAAAAASEDVVST
RTALEQNMGATAVPVSQEVFHEASYEQEQEPVTAAATPEANAADANASRT
EPEVVDGGLGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGW
VTGTCNGQTGQFPSNYTERID*
back to top

mRNA from alignment at Contig_18:125805..136723-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1251 ID=mRNA_1251|Name=jgi.p|Trimin1|347993|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10919bp|location=Sequence derived from alignment at Contig_18:125805..136723- (Tribonema minus UTEX_B_3156 )
ATGGACAGGCGTAAGCGCACGTCACTGGAAGCCATGGTGGACGCCAAGAA
CGAGGAGCTTCGGCGCATGCTGCTGGACAAAAAAGCCATGCTGGCGGAGG
AGCACAAAGTGAGGGAGAGGCTGAGCAGAGACCACGCCAACACCATACAC
CAGATTTCCAACATCGAGACGGCGATACGAAGGCTGAGGGCTGATCATCT
GGCATCGGTGAGTGAGCATGAAGAGACTGGCTGCATGCTTGTTCGCTCAT
GTGGTCATGCAACTGCTAGACAGAAGGCCACTTGGGTAAACATGCACTTG
ATGGCGCAGCAGGCTAGGGCCTGATTGGATATGGTAAGCCAGCAGCTCTG
TGCTGCACCAGAGTTTTCTCAATACGCGCAGCGCTGCTGTTGCTACATAT
TGTTGCTAGCTGTTGTCGTTGGGCGTCACCTTCACACAGCAACAAGGTGG
AATGGCAGGAGGTAATTGCAATTGAACAGTCAACAGCTGGCGGCCATTGT
CCACGTTCAAGCGTGCCATGGTGTCCTGAACCCGTTGTGAAGCACAGTTG
CATTATGAGAGGCAGCATATCTATATATGCATGGCGAGTCCTTGAATCCT
GCCATTAGTGATTCATGCCTGACGCACTTGCGTGTTCTCCCTTCCTTGCT
GTGTATTCAAGGTGGAGGCTCAGCAGGCGGCGTCACGAGCGGAGCTCTCC
GTTCTAGAGCAGGAGGTAGCCGCCATGAACAAGCAGCGCCTGGCACTGGA
GCGCTATGTGGTGACATTTGACATCGTGGACCAGGAGCACGCTACGCTCA
AAGCGCGGCTGAGATCCCTGAAGGAGAGCGAGGGCAAGGAGGCCCAGGAG
AACGCGGCGGAGCTTGAGGGCCTCAAGAGCAGCGTGTTTCAGTTGCGCAC
GAGGCTGGATGAGGTGTTCCGAAAGACGCTCGCTGCGGTACAGGTGAGTC
TCTCATACATTGGTTGTACTCACACCGTTTTACTTTTGTGACACGTGGCG
GCCGCTGCGCAACACGAATGGACGATCAGAGCCTGTTGGCCTTTCTTGCT
GGCTTCAGTGATGCCTGACCTTACTGCTCCTTGCAATGGGCCATGGCTAG
CCGCGTTCTGTTTCATACTTCAAGTGCGATGCCAGCAGCTCAAGTTTTTG
CTCCCTGAACGCTGTTTCGTGCAAAACAGTAGTTTGTAGCAGCTGTAAAC
CGGATGGGGTGACCACAGAGCAAAGTGCATCGTTGCGTTCTGTTTCAGTG
CATCTTCAAGACTGCCACAAGTGCGCCTGAGCCCCGGGCATCCATACTCC
GTTGCCTGCGCAGTATGACACCTACTTGTTGCACAGGCTTGGGCCATGAA
TTGCTCACCATATAGGAGCACGTCACATAGCACAGCTCATCAACCGTCAG
TCTCAGCTCCACCGTTGGAGATATGTGCAAGGTCACCCTGTGAAATGCCA
GATCTGGATTGGTTAACTTTGAAGGGCAGCGGTACATGCCAATGTCGGCG
TCATCGCCATGCCCGCTTCGCATTCGCAGGGCCAAACAAAAGACAGCGCG
ATGGTGGAGGTGCTGCAGGAGGCGCGCGAGGCTCATGACCACGCCGCGCA
GCTGGCCAAGACGCTCAAAGCGCGCACGGCCACCGTAGCGCGCGTCCTGC
AGGCGCACGCCCAGAGCAGACGCGCCCTCATGCAGGTACATGGACGAAGA
GAAGGACGGTGGCGCGCCCATGCGTGAACGCGCACTTGGTCAAGTGCTTG
TCAGATGGTGACTGGGTGTGAACTCGTGCGCGCTAGCGCTCCAACAATCA
GAGGTCACCCATCATTGCCAGACGACTTGTTGTGAGTTGACTGGTGTGAG
TTGGCTAACCTGCGGTGCCCAAATGTCAGGTTGGGAGATGGTGTGACTAG
AGCGGCAGTGCGGTTGTCATCGGCCATCGAGAGTTCTCAAAAGCGTGCTC
GAAGAGCATGTCAGGCCAGACTCCACCTTGACAATCGTCAGCGCTTCTCG
AACCACAATGCGCAGCTGCGCAGGCGGCAATGCCTTGCGGCAAACGCAGA
CACCCATGCGGCCATCCATCATTGCCAACGTGTCACACCCCCGCAACACC
GATCATGACCATGCGCAGGTCCGCGTGGACAGGGACATCACGGCGGACAC
CGTCAAGGCCCAGGCTGACAGAATATCGGCCCTCGACGCGGCGGTCGCCG
CACAGGAGGCAGATGTCACCCGCCGCGAGCGCGAACTTCAAGTGGCACTG
ACGCGCCAAGCGCAGCTGGCCACGGAGTCGGCCGATCTGCAGCGGCTGGG
GGGGGAGGTGACGGCGGCGCAGCGCGCGTGCGCGGCGGCGCGGGATCGCG
CGGTGAAGGCGCGGCACCGCGCGCTGCGCGCCGCGCGGGCGGGCGGCGGC
GGCGTCAGCAGCAGCGGCATGCAGCGGTCGCTCTCGCTGCCGGCGCTGCG
GCGGAGCGGCAGTTCGAGTTGCAGTGGCGGCGGCGCTGGCCGCGTGGCTG
AGCACGGCTGTAGAACGAGCAGCAGGGAGAGCAATGCGAGCGAGCGGCGC
AGCAGCTGCTGCAGCGCAGCGTCGGAGGACGTGTCGCGCATGTGGCGCGC
CAGTTGCTCGCCGGCGCCGTTTGAGATGTTTGCAATGTAATCCTCCTTGT
CTGCTGCAATCAATTTTGTCAGTGCTAGGCCATTTTGTGGGCGCTGTCTT
GTGCCCTGCCGTGCATGAGCTTGCGTGATGCCATACTGCTGCCGCTGTGC
GTAGCAAGACTTGGTTGGCTGAAAATGACGCTCTACAGTGCCTTCAGACC
ACCTTCATCGTTGCATTATGCTTGTACAGCCGACGCATTTATCTGAATCA
TGCCATGATGTCATTTTCAGATACTTTGAATTACCATCGCACGCAGCACC
GAGTTTCTCCTCGAACCCGCCATGTCAGGGCCCTGAAACCCTAGTACTGC
GACCGTTTTTTCGGGGTCCATCAAGCCCTCGAGCTGCTCGACAGCTAGCA
GTACACGGCGAAACAGGGCCAACTGCGGGAGGCAGCGACGTCCAACTAAT
GGCGCAGCCATCCAGGGTCGCCAAGCTCCTTATTGGTGCAAAAAATGTGG
TACAACACAAGAGCCTGGTAAAGTGTAAGTGGAACTGCTTCTGCAGCATG
ACCTGTTGTTTTGCGGTACGTCCGTAGCTGCCTCCAGATGTCGATATTGA
ACAAATGTGCTTTTCACGCCCCTCATTTGCTTTTCTGCCGATGCAGTTGA
CACGGTGGACACGGAAAGCGATAGGGACTACAAGGCTGCGGAGGAGCGAT
TTCTTGTGTTCCGCGCACAGCTGCTCGAGGTGAGGCGGTATTGGTGTTTT
GACATTTCATTACATCTGCAGATTCCCTGCTGATGTGACGGCACACGGAG
CGTCTTGCGTGCCCGTTGCCTCAAATGTTCAACAGCTGCCGTGAAGTTGT
TGACAGCCCGTGTCAACTGCCAGTTCACCTAGAGCTCGTACGTGAATGCG
CTGCTGAATTTATGAAGTTGGTGCTGGCGGCGGTGCACCAACGAAACACA
GAACCGCAATTTCAACGTGGTTTCCATATACTGCATTAGGACACTGCTGC
ACTGCTTTTCTAGAAGGGAACCACTTTCACTCAAAAAAAATTCACTTCCA
CCTCTATGATCTGCAGCTTTGTGATCTGTTGCTCAGCGCTATTCATCATC
TGGATTCGAGTATGGTCATAATTGCGATGAAGTTCGTTTGTGAGCTGACT
GATGAAGCCCCTGTTGCACACGTCTCACAGATTATCCAAAACACGGAGCA
GTTTCGCTCAAGGCTGAAGGAGTCCATAGCTGTCGCATCCAAGCTGTCCC
AGAACTTCTTGAAAGTCAGTCAAGGGGAGGGTGCGGGGGATGCGGAGCAG
CAGGAGCCTTGGAGCCAGGTTGCCCGCAAACAGGCGGAGTCGTTAAAGGC
GGCAACAGGCAAGGGACCACTTTGTCTTGCACACCCTGTCACCAGAATCA
AGGTTCCCCATAGTGCAGCTGGCCTCCTGGGCCATTGTAAGCCTGAGGGA
CTACGTCCAGCACACATCAGCTCTCAGGTGCGGTGTCTGTATTTTCAATT
GTGTGTCAGAGGTAGAGCAGAGGCGACGGCAGGGCACCTATATGTACTCA
GTGCTCAGCAACCGGTGGTGGGATGATGATTGGACAAGGAGGCGAGCAGC
TCAAATGGCAGCTACCTGTGCAGGCGCCACAAAGGAGCGAGCAATGGCAG
GGTTGCTGCCAAAAGGCTCAATGTGGCATGCAAGCAGGTTTGAAGGACAT
TAGGCGGCACCAGACAAGTCACATCGCTAAGTGCCCATCCTTTTTGTAGG
CACCCACAATACCCGCTACTATCAGTAAGCCTGATACAGTCTGGGGGACA
ACAACACATAACCTTCACACGGCCATACGTCGCCTCCCCATGCACGAATC
TATCAGCATGTGTTGCGCTGATGCGCCACACCCATGGTTTGTAGCAGGCC
AGGCACTGGTGGCCGCAACAGGGACCGGCGTTTGCATGACGGTGTCTGTC
CTCAGCTCCTGCTGTTTGGCGCCTCTTTGCACAGTGACTCACAGATGTGT
GCTCCAGCTACTTCTTGTAAGTGTATGTTCACACCGCTGTTGGTGACGTG
TTGAAACTGCGGTCAACTGTCATTTGAAGTATGTTGACGTGCAAGTTGTC
CTATGAACCAACGGGCTCAGCGTAGTTGCTATGGGCTAGTACGTATCAAC
TGCACTCCGCGGTGGTGCCTGCCTGCCCGCTATTGGTGTGCATTGAGTGG
CAAGCCCGCAACTCATGATTGCAGCTGATCCAATGAAACACAGATGTGAT
TGGATCGCTCGGCTGCGCACTTTGGTCACAAGCAGGGCAGACGCAGCCTC
TGGCTACATGTGTCTTGTAGCTTGATGCGTCTTGCGCACGTGTGGTACCT
GTCATGCAATGCGTCACTGCCTGTGTGGCCGCCTTGCTCTACATGGCACG
CAAGCGCAAAGAATAAACTCATGAGTGCAACTGCCACTGTCCTGCGTGGT
GTGCGCAGGCGACAGCGGCGTGGCGTTGGATGAGCTGCTGTTTGTGGACC
TGGACAAGTACGTGCTGTCCGATCTGAAGATACAGCACGAGAGCTACAAC
GACATCAACAAGCTGGTGAAGGAGCGCTATGAGCTCAAGGTGGAGCTGCA
GCACTACAGTGACAAGGTGCGTCATCGTCAGTGAGAACCCTTTTCACTCG
GGTAGGACAGATTGAAAACTGAAGCCCTGCAATCAGCAGAATTGATTACG
AGAGCATTCAGAGTTAGTAAGTGCCAGGAAGGATACAAAGTCTATCATAT
CGACACGCTGTCCCATCTGTCACAGTAACAGCAGCGGTGGATAGTACCGC
TGACGAGTAGATACTCTGACAAAACCAACAGAAGCGCCTCACTCAGTGTG
CTACGATTGGGCACTGCATGACCGCAAGCGCCAAAACAGCCTCATGCCAG
CCTTTGCGCGCACCCCTTCTCCCAGGTGTAGCACCCGGGTACGCGCACAC
CTAACGCACTCCGCACTGCTGACCCCCCCCCCCCCCCCCCTCTTGTCAGG
TCCAGGAGCTCAACGACAACCCCAAGGTCGCGGCGGAGCGCAAGGTGCGC
AACGAGGAGAAGTACGCCACGGCCAACACGCGCCTGCGCGAGCAGACGGA
CGCGCTGCTGCGGCGCTTTGCCGAGTCGGAGGTGCGGCGGCGGCGCGTCC
TCGAGGAGGACCTGCCGCGCATCATGGACCTAAAGCGCCTGGCGTACGCG
GCGCTGGCGACCAACGCCGAGAAGGCCGCGCAGGGCCTCGTGCTGGCGCC
CATGTGAGTGACCAGGCGGGGTTTGTGTGTGGTGCTTGCGGTATACTGCA
GTTGGCCGGAAGGCCTGGAAGAGGCTCGTGCGCATGCCGATGCCGGTGCC
TGAGTTGCACGGGGGCTCGTGCTGGCGCCCATGTGAGTGGCGTGCATGCG
GGGGTGCGGTGCTTGCCGCGTTAAAGCGGTATGTTGCAGTTGGTCGACAT
GCCTGGAAGAGGCTCGTGCAGATGCCGATGCAGGTGTCTGAGGCACGCAG
GGCCTCGTGCTGGTACGGCAGTTGACAGGTTGTCGTGTGGTGTGCTGCAG
TTGGCCAGAAAGCCCGGAACAGGCTCGTGCGTGGGGGTGTCTGAGCTGCG
CAGGGGCTCGTGCTGGGCGCCCATGTGACTGGCGCGTGGGGTGCGGCTAC
GGCAGTTGCAGTTGCCAGGTTGAAGTGTGGTGTTCTTCTCTACTATTACG
GTGTTGTCCTTCTCTACTATTACGGCAGTGACCGAGTTGACCGAGTTGCA
GTGTGGTACACTTGTTTACTATTACAAGCAGTAAGTGTGTCTTTTGCCAG
ACTGTTTGCGGCTAGTGGCATACGCGGCGACGGCGATGAATGCGGGGGCT
GCAGAGCGGAGGGTGTACTCAAGTGAATGCGGGCGTCCAGGCCTCGCTCG
TTTTTGAGCTGGCTGTAGTATGCATGAACGCGTGGATTGTCATGTATGTA
GGCATGCTTTGCTGTGCGTATGCAGAGCTACGTCCACATGTGCCTTGACC
ATGATAGGAAGGTGGAGAATCGGCTTTGTGGATGGTGCCAACTTCAAGTC
CGTGATGGAGAGCAGAGTCTGCTCAGCAGACCAGGCCAGCACGTGGTAGC
ACAATCAAAGTAGCTGAAAGCGCATGGTACACATCCGCGCAGTCGCTTCT
GTCACTGTATGACGTCAGCAGTGGCAAAGTGAAGTTGCGCATCAGCGTAT
ATTGAAGTGCGGAGTGTCATCGGGAGCAGAGCGAGTTGAACTTGAGCAGT
TGCATCGCCCCAGATGTCAGCATGAAAGTCTTTGCACAAGCCAACAATTA
GACCATAGCTGCCACTTCGATGTTGATGACAACTCACATGTGCGGTCCTT
ACCTCTTCATCGCTTCACACTGTACCGGTGTTCAGGCGCTCCGGCTCAAG
GGGTTCAAGCTCTGCATTCGGCTCAAAAGACCTGCCAGGGTCAGCGCGCG
GCAGCTACGACAACACTGTCACGGGACAGGGCGCAGAGAGCGCGCGCATG
TCAGATGTGCCATTGGTGAGTGGGCGCTGCGGTAATGGTGGTGATATACA
TACATGTGAACATGCAAGCTGAAGTGCTGATGAAGAACTGATGACATGCC
AGTACAGAGGCGCTGTGGTGCGGCGATGGTGTTCACACATACCTGAAAGT
TGAAGTACCGAGAAGTACTGATGACGTACCAGCACAGAGGCGAGGCAGCG
CGGCGCCGGGACCCTCTGCACTCAGATTGCTGCTCTGTACAGCTGATCAC
TGTGAGAGTGCAGTTTTGGAGGCTTGGTAAATGTCATTGATTTGTATATG
ATGGCCAGTCTTGCACAAGCAGTCTGCTTGTAAGCTCAGATCCACTTGCT
GCCGGTCCTCACAGCAGTGTACTTGTGAGTACCTTCCATCATGAGGTGGT
GGTGCACTCTTGCAGTGCTGGCGCTGCATGGTGACTGATGCATGGCAGTA
GCCTTGTTGCTGTCTGACACAACACGTTCAGGCCGAACGCCACAATGTGA
GAATGAAAGCAGAAAATGTGGTGCTCTCCAACCGTCATAAGCAACATGCC
CCGGCAGGCGTCCATGTCTGAAACAACCCCTGATCGTCAATTCACCGATG
CCTCAGCATGATTGTCAATTCACCGATGCCTCAGCATGCAGTAACCGCGT
TGTGAGTGTCGCATGGTGCAGCCGCTGTGTGATGCAGCCAGTGCCTGCCG
TGCGCTTAGAGCGGCGCAGCGAGCCACCCATGCTGTGTCCTGGTGCTGCA
TGCACCACGCCAACCCTGTCCTTGTGGTGTTTTCCTGCTTGTTTTTCATA
GTTAGTTTCATCCTTTTATTCGCACCTTCTTCTTTTCATCTTCGCAAGGG
GGGGAATTTATTGCAAAACCCGCAAAATCCGCAGTACAACGCCCCACGAG
CAACAGCGGCGCAACCCTCATTGCAGTGCGCGTGCTTGCTCACCCCATCA
CGACCTTACACGCAACGCTCCCGTGTGATGCGCTCCTGCTGCAGGGGGGC
ACCTCGTCTCAGCGCACGTCTGTCAACACGGACCATGGCGCCAGCTCGCA
TGCGCTGACTGCCAAGCCCGCCGCCGCCGCTCTGCTCGACTCCCCGCCGT
CGCACCTGTATAAGCGGTGAGCCGCCAAGGCCTCATAGTTGAAGTTGCGT
CAGATGCGCAAGCGGTGACTCGCCGGGTCGTGACCATGACTCTTGCGTTT
CTGCATGCAGGGTTGAGGTTTCAAGTGCTCAAGAACAGACGGTCTTGTTC
GGCGAAGCACACATGCTGCTGATGGAAAGCCGTGCAGGGGCGCTGATTTG
TGGCGTTGTGGTGCAGTAGGTATGCTGTGATGCCTACGCCTACGAGCACG
CGTGGCTTGAGCTTGATCGTTGTGGTGTTGAACTTCACAGACGTCGGCGA
TGCACTCCGCATGACACATGCGCGTGCATGCATTCCCGCACACTTGTTCA
CATCTCACAGTGTTCAGTCACACACCACGCTGCACTGGTCAACGCTGGCT
TGATCCACAGCAACACTTGCGAAGCACACAGGTCAAGTTTTGTCAGCGCA
GTCATTTTGGCTCCAGCCACAAATTTCAATTGTGTCAAGCGCCCCATCGC
CCCGTGTAAGCTATCAGGTGCAATAGCGCCGGGTGACATTCATACTTGAA
GTACAGTGTACGCTGCAACTGTCGTGTTGCCGACAATGGCCGTGTGCAAT
CGTGCCTCATGCGCAGTGCAAGCGGCTCCATGGAGAGCGTGCAGCCCGGT
GGCAACGCGGGCGGGGTCGTGGGGCAGTCCTCTCACAGCGGTTCGGCGGC
AGCGGCGGCGTCAGAGGATGTCGTCAGCACACGCACAGCGCTAGAGTGAG
TGACACGAGTAGTCTTGTTGTGCGCGAATTGTCAGCACCGCTTGACGCGA
TCATGCGGGTGCCTTGCAAATCCAGCAATTCATGCCGCCGTAGCTGTGTC
AGGGATTCCTGAAGTTCAGCATGGCCTTGCAGCAGAGTGCAAGAGGTACT
TGTGCTATGTGCTGTCTTCTTTTGCACACCAAAATGTAATGGCATTGCAG
CCGTCTGCACTATGTACCCACGCTGCTGGCACACAGTCAACACACTCGCA
GATGCGTTTTTTACAAAAAATTGGATGCATTCAGTTGACTTGTTGATGAT
GCCACTGCTAGAAGAGCCGGCCTGGTCCCTGACATATGCTGGTGCTCCTG
GCTTTCTGCACAGGCAAAACATGGGCGCCACCGCTGTCCCCGTCAGCCAG
GAAGTGTTCCACGAGGCGTCCTATGAGGTGAGAGGCAGCTTGGTTGCCGC
AGCTTGCAGTGCGTGCGCTCCATTTCTTAGCGGCGATGGCCTGCAGCTAC
ATTCACAGCCACTTAGCGAAGGCATGTTAGTGTTATGTGCATGTGAATGC
TGCCTTTGTGATGTAGCGTCATATGTTTGTGCGCACATGCATACATACAG
GCCAATTGTTGACTCTGCGACATGCGCCAAGGCACCAAGCAGAGGCTCTA
GGTACCTAGCAGTGCTGTGGTCAATGCAGATGAATGTAGCCGGTGCAGCG
CGAAGATGGTTGGCGCACTTGTGCATGCACACAGATCGCTGATATCATAT
TGCCGGTATGGTTTGATCATGTACTTGATCGACAAACAATTGCGTTATTA
TGGCCACGTTGTGGTGCTTGGCGTTACCCGTGCCTGATGCATGCTCTTGA
TTTCAAATAGCGACTGATTGCAAATGGTCTCAATGACGCTGTGCAGCAGG
AACAGGAGCCGGTAACCGCTGCTGCCACGCCTGAGGCAAATGCTGCGGAC
GCAAACGCGTCGCGCACTGAACCAGAGGTGGTCGACGGCGGCCTCGGACC
AGGGTGAGCACTTGCGACTTGATGTTGTGATAATGCCAGTATATCAAGGC
CAACAGCTGCATGATAGTTGCACGCTGCTCCTCCTGAGCCTCAGCATACA
TCCTCCCTTTATGGCCTTATGCACATGTCAATGCCATCTTGGCAATCAAT
GACGTGAACGCAGCAGTGATAGATCGTGACAAGGCTGCAATACAGTGCTT
GCAGATGGAAGGAGGGCGCTGGTGCATCATCACAGACGCAGAATGTCAGC
ACAAGCACGTCATGGTGAGGTGTCAATGGCCACTGTCCATCGCGCGCCTC
GCTGTACTTCAACATTGAAGGCCGCCCCATCACATGAGCTGCCCAGCTGC
ACTGACACTGACAAGAGCGCTCTGCGCCCGTGGCGCAGGTACATGAGGGT
GAGGGCGCTGTACGACTTTGAGGCCGCCGAGGAGGGCGACCTCAACTTCA
AGGCCAACGACATCATTGTGACCGACGCGTCGCGGTGGAGCGCGGATGGC
TGGGTCACGGGCACATGTAACGGCCAGACGGGGCAGTTCCCGTCCAACTA
CACGGAGCGCATCGACTGATACACATGTCAACGCATATGTCAATGCATAT
GTCAACACACATGTCAAGTGTTGACGTATGTCAATACATATGTCAACACA
CATGTCATATGGTGTCGCCGCACGCTCACGCGACGCGCGGGGGCGCTAGC
GCCTGTCGGCTCTGTCACAGCCCCCATCTTTTCCTCTCCAGAGGGGCATG
CAAAGCGGCTCAGCGGCCGGTTTCGCTCGGTCAGCTGCCTGCCGCAGGGG
TGTGTGTTGTGTGTGGCTGGAGGGCTGCTGCGACACTGCCGGCGCATGCC
TTTTGTGCTCTCGTCGTGAGTCGGGCAGGCGCTGCGAGCTGGACTTGTTT
ATCGTGGTTTCAGCCGTCGTGTTGAGCGGGGGGGGGGGGGCACACAAGGA
TACTTCTACAGGGGTGGGG
back to top

Coding sequence (CDS) from alignment at Contig_18:125805..136723-

>mRNA_1251 ID=mRNA_1251|Name=jgi.p|Trimin1|347993|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2316bp|location=Sequence derived from alignment at Contig_18:125805..136723- (Tribonema minus UTEX_B_3156 )
ATGGACAGGCGTAAGCGCACGTCACTGGAAGCCATGGTGGACGCCAAGAA
CGAGGAGCTTCGGCGCATGCTGCTGGACAAAAAAGCCATGCTGGCGGAGG
AGCACAAAGTGAGGGAGAGGCTGAGCAGAGACCACGCCAACACCATACAC
CAGATTTCCAACATCGAGACGGCGATACGAAGGCTGAGGGCTGATCATCT
GGCATCGGTGGAGGCTCAGCAGGCGGCGTCACGAGCGGAGCTCTCCGTTC
TAGAGCAGGAGGTAGCCGCCATGAACAAGCAGCGCCTGGCACTGGAGCGC
TATGTGGTGACATTTGACATCGTGGACCAGGAGCACGCTACGCTCAAAGC
GCGGCTGAGATCCCTGAAGGAGAGCGAGGGCAAGGAGGCCCAGGAGAACG
CGGCGGAGCTTGAGGGCCTCAAGAGCAGCGTGTTTCAGTTGCGCACGAGG
CTGGATGAGGTGTTCCGAAAGACGCTCGCTGCGGTACAGGGCCAAACAAA
AGACAGCGCGATGGTGGAGGTGCTGCAGGAGGCGCGCGAGGCTCATGACC
ACGCCGCGCAGCTGGCCAAGACGCTCAAAGCGCGCACGGCCACCGTAGCG
CGCGTCCTGCAGGCGCACGCCCAGAGCAGACGCGCCCTCATGCAGGTCCG
CGTGGACAGGGACATCACGGCGGACACCGTCAAGGCCCAGGCTGACAGAA
TATCGGCCCTCGACGCGGCGGTCGCCGCACAGGAGGCAGATGTCACCCGC
CGCGAGCGCGAACTTCAAGTGGCACTGACGCGCCAAGCGCAGCTGGCCAC
GGAGTCGGCCGATCTGCAGCGGCTGGGGGGGGAGGTGACGGCGGCGCAGC
GCGCGTGCGCGGCGGCGCGGGATCGCGCGGTGAAGGCGCGGCACCGCGCG
CTGCGCGCCGCGCGGGCGGGCGGCGGCGGCGTCAGCAGCAGCGGCATGCA
GCGGTCGCTCTCGCTGCCGGCGCTGCGGCGGAGCGGCATTGACACGGTGG
ACACGGAAAGCGATAGGGACTACAAGGCTGCGGAGGAGCGATTTCTTGTG
TTCCGCGCACAGCTGCTCGAGATTATCCAAAACACGGAGCAGTTTCGCTC
AAGGCTGAAGGAGTCCATAGCTGTCGCATCCAAGCTGTCCCAGAACTTCT
TGAAAGTCAGTCAAGGGGAGGGCGACAGCGGCGTGGCGTTGGATGAGCTG
CTGTTTGTGGACCTGGACAAGTACGTGCTGTCCGATCTGAAGATACAGCA
CGAGAGCTACAACGACATCAACAAGCTGGTGAAGGAGCGCTATGAGCTCA
AGGTGGAGCTGCAGCACTACAGTGACAAGGTCCAGGAGCTCAACGACAAC
CCCAAGGTCGCGGCGGAGCGCAAGGTGCGCAACGAGGAGAAGTACGCCAC
GGCCAACACGCGCCTGCGCGAGCAGACGGACGCGCTGCTGCGGCGCTTTG
CCGAGTCGGAGGTGCGGCGGCGGCGCGTCCTCGAGGAGGACCTGCCGCGC
ATCATGGACCTAAAGCGCCTGGCGTACGCGGCGCTGGCGACCAACGCCGA
GAAGGCCGCGCAGGGCCTCGTGCTGGCGCCCATGCGCTCCGGCTCAAGGG
GTTCAAGCTCTGCATTCGGCTCAAAAGACCTGCCAGGGTCAGCGCGCGGC
AGCTACGACAACACTGTCACGGGACAGGGCGCAGAGAGCGCGCGCATGTC
AGATGTGCCATTGGGGGGCACCTCGTCTCAGCGCACGTCTGTCAACACGG
ACCATGGCGCCAGCTCGCATGCGCTGACTGCCAAGCCCGCCGCCGCCGCT
CTGCTCGACTCCCCGCCGTCGCACCTGTATAAGCGTGCAAGCGGCTCCAT
GGAGAGCGTGCAGCCCGGTGGCAACGCGGGCGGGGTCGTGGGGCAGTCCT
CTCACAGCGGTTCGGCGGCAGCGGCGGCGTCAGAGGATGTCGTCAGCACA
CGCACAGCGCTAGAGCAAAACATGGGCGCCACCGCTGTCCCCGTCAGCCA
GGAAGTGTTCCACGAGGCGTCCTATGAGCAGGAACAGGAGCCGGTAACCG
CTGCTGCCACGCCTGAGGCAAATGCTGCGGACGCAAACGCGTCGCGCACT
GAACCAGAGGTGGTCGACGGCGGCCTCGGACCAGGGTACATGAGGGTGAG
GGCGCTGTACGACTTTGAGGCCGCCGAGGAGGGCGACCTCAACTTCAAGG
CCAACGACATCATTGTGACCGACGCGTCGCGGTGGAGCGCGGATGGCTGG
GTCACGGGCACATGTAACGGCCAGACGGGGCAGTTCCCGTCCAACTACAC
GGAGCGCATCGACTGA
back to top