mRNA_1486 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161776
Unique NamemRNA_1486
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161776 vs. uniprot
Match: A0A835Z893_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z893_9STRA)

HSP 1 Score: 486 bits (1252), Expect = 1.460e-172
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 1 
Query:    1 MHAAASQNTSRLTAERHLLRAVEDNDGARVTELLQRYSDLDAEDVYHHTALMLAVQEGFTGIVSTLLRHNGEERVEAVDEDGLTPLMFACVPDRVRLIPKLLRHGSDPVARXXXXXXXXXXXXXXXXXXXXXXXXKDASAQQQVMAMSDDESFVTPLLIAESEGHTEAVRELLTCSPQVQLTYRSPSGATPLMVAVDGRHSNNHEILMVLILAGLPLQQLVDFESPAVSATMSAGSYNYGLHVITETLQRLQSYNSYAEYASGARRGGGFRGRRSRSLGR 840
            MHAAASQNTSRLTAERHLLRAVEDNDGARVTELLQRYSDLDAEDVYHHTALMLAVQEGFTGIVSTLLRHNGEERVEAVDEDGLTPLMFACVPDRVRLIPKLLRHGSDPVARXXXXXXXXXXXXXXXXXXXXXXXXKDASAQQQVMAMSDDESFVTPLLIAESEGHTEAVRELLTCSPQVQLTYRSPSGATPLMVAVDGRHSNNHEILMVLILAGLPLQQLVDFESPAVSATMSAGSYNYGLHVITETLQRLQSYNSYAEYASGARRGGGFRGRRSRSLGR
Sbjct:    1 MHAAASQNTSRLTAERHLLRAVEDNDGARVTELLQRYSDLDAEDVYHHTALMLAVQEGFTGIVSTLLRHNGEERVEAVDEDGLTPLMFACVPDRVRLIPKLLRHGSDPVARXXXXXXXXXXXXXXXXXXXXXXXXKDASAQQQVMAMSDDESFVTPLLIAESEGHTEAVRELLTCSPQVQLTYRSPSGATPLMVAVDGRHSNNHEILMVLILAGLPLQQLVDFESPAVSATMSAGSYNYGLHVITETLQRLQSYNSYAEYASGARRGGGFRGRRSRSLGR 280
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161776 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z893_9STRA1.460e-172100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1218677..1219519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161776|e_gw1.18.17.1
DescriptionAnkyrin repeat
COG categoryS
Max annot lvl4751|Fungi
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,38GV0@33154|Opisthokonta,3P0RN@4751|Fungi,3QPJ6@4890|Ascomycota,20E7T@147545|Eurotiomycetes,3MQTK@451870|Chaetothyriomycetidae
Evalue3.07e-05
Seed ortholog5970.XP_009158095.1
Hectar predicted targeting categoryother localisation
TranscriptId162098
TrackFilteredModels1
ProteinId161776
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161776gene_1486Tribonema minus UTEX_B_3156 geneContig_18 1218677..1219519 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1486_1exon_1486_1Tribonema minus UTEX_B_3156 exonContig_18 1218677..1219519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1486CDS_1486Tribonema minus UTEX_B_3156 CDSContig_18 1218677..1219519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161776Trimin1|161776|e_gw1.18.17.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1218677..1219519 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1486 ID=mRNA_1486|Name=jgi.p|Trimin1|161776|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=843bp|location=Sequence derived from alignment at Contig_18:1218677..1219519+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCAGCAGCATCGCAGAACACATCGAGATTGACAGCAGAGCGCCA
TTTGTTGCGTGCTGTCGAAGATAATGACGGCGCGCGTGTTACGGAGCTAC
TGCAAAGATACTCTGACCTGGATGCTGAGGATGTATATCACCACACAGCA
CTCATGCTGGCGGTGCAAGAAGGATTCACCGGAATTGTTTCAACTCTGCT
GAGGCATAATGGAGAAGAACGAGTAGAGGCAGTGGATGAAGATGGCTTGA
CACCTCTCATGTTTGCCTGTGTGCCTGATCGTGTGCGGCTGATACCCAAG
CTCCTGCGGCACGGCTCAGACCCAGTTGCTCGCGACAGTGATGGCCTCAC
TGCACTGATGCGAGCTGCATATGCAGGTCATGTGACTGTGATCAGCGCGT
TATTGAAGGACGCATCTGCACAGCAGCAAGTCATGGCAATGTCTGATGAT
GAATCGTTCGTCACACCGCTTCTTATAGCAGAGTCTGAAGGACATACAGA
AGCTGTGCGAGAATTGCTCACGTGCTCTCCGCAGGTTCAGCTGACGTATA
GGTCTCCATCGGGTGCAACGCCACTGATGGTGGCCGTGGATGGGCGCCAC
TCCAACAATCACGAGATCCTGATGGTCTTGATACTTGCCGGATTGCCATT
GCAGCAACTGGTCGACTTTGAATCGCCAGCAGTGAGTGCAACAATGTCAG
CAGGCAGCTACAACTATGGACTGCATGTAATCACCGAGACGCTGCAGCGT
CTGCAGTCATACAACTCGTATGCTGAATACGCGAGTGGAGCAAGAAGGGG
TGGCGGCTTCAGAGGGCGCAGGTCTCGCAGCCTAGGACGGTAG
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protein sequence of jgi.p|Trimin1|161776

>Trimin1|161776|e_gw1.18.17.1 ID=Trimin1|161776|e_gw1.18.17.1|Name=jgi.p|Trimin1|161776|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp
MHAAASQNTSRLTAERHLLRAVEDNDGARVTELLQRYSDLDAEDVYHHTA
LMLAVQEGFTGIVSTLLRHNGEERVEAVDEDGLTPLMFACVPDRVRLIPK
LLRHGSDPVARDSDGLTALMRAAYAGHVTVISALLKDASAQQQVMAMSDD
ESFVTPLLIAESEGHTEAVRELLTCSPQVQLTYRSPSGATPLMVAVDGRH
SNNHEILMVLILAGLPLQQLVDFESPAVSATMSAGSYNYGLHVITETLQR
LQSYNSYAEYASGARRGGGFRGRRSRSLGR*
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mRNA from alignment at Contig_18:1218677..1219519+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1486 ID=mRNA_1486|Name=jgi.p|Trimin1|161776|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=843bp|location=Sequence derived from alignment at Contig_18:1218677..1219519+ (Tribonema minus UTEX_B_3156 )
ATGCATGCAGCAGCATCGCAGAACACATCGAGATTGACAGCAGAGCGCCA
TTTGTTGCGTGCTGTCGAAGATAATGACGGCGCGCGTGTTACGGAGCTAC
TGCAAAGATACTCTGACCTGGATGCTGAGGATGTATATCACCACACAGCA
CTCATGCTGGCGGTGCAAGAAGGATTCACCGGAATTGTTTCAACTCTGCT
GAGGCATAATGGAGAAGAACGAGTAGAGGCAGTGGATGAAGATGGCTTGA
CACCTCTCATGTTTGCCTGTGTGCCTGATCGTGTGCGGCTGATACCCAAG
CTCCTGCGGCACGGCTCAGACCCAGTTGCTCGCGACAGTGATGGCCTCAC
TGCACTGATGCGAGCTGCATATGCAGGTCATGTGACTGTGATCAGCGCGT
TATTGAAGGACGCATCTGCACAGCAGCAAGTCATGGCAATGTCTGATGAT
GAATCGTTCGTCACACCGCTTCTTATAGCAGAGTCTGAAGGACATACAGA
AGCTGTGCGAGAATTGCTCACGTGCTCTCCGCAGGTTCAGCTGACGTATA
GGTCTCCATCGGGTGCAACGCCACTGATGGTGGCCGTGGATGGGCGCCAC
TCCAACAATCACGAGATCCTGATGGTCTTGATACTTGCCGGATTGCCATT
GCAGCAACTGGTCGACTTTGAATCGCCAGCAGTGAGTGCAACAATGTCAG
CAGGCAGCTACAACTATGGACTGCATGTAATCACCGAGACGCTGCAGCGT
CTGCAGTCATACAACTCGTATGCTGAATACGCGAGTGGAGCAAGAAGGGG
TGGCGGCTTCAGAGGGCGCAGGTCTCGCAGCCTAGGACGGTAG
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Coding sequence (CDS) from alignment at Contig_18:1218677..1219519+

>mRNA_1486 ID=mRNA_1486|Name=jgi.p|Trimin1|161776|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=843bp|location=Sequence derived from alignment at Contig_18:1218677..1219519+ (Tribonema minus UTEX_B_3156 )
ATGCATGCAGCAGCATCGCAGAACACATCGAGATTGACAGCAGAGCGCCA
TTTGTTGCGTGCTGTCGAAGATAATGACGGCGCGCGTGTTACGGAGCTAC
TGCAAAGATACTCTGACCTGGATGCTGAGGATGTATATCACCACACAGCA
CTCATGCTGGCGGTGCAAGAAGGATTCACCGGAATTGTTTCAACTCTGCT
GAGGCATAATGGAGAAGAACGAGTAGAGGCAGTGGATGAAGATGGCTTGA
CACCTCTCATGTTTGCCTGTGTGCCTGATCGTGTGCGGCTGATACCCAAG
CTCCTGCGGCACGGCTCAGACCCAGTTGCTCGCGACAGTGATGGCCTCAC
TGCACTGATGCGAGCTGCATATGCAGGTCATGTGACTGTGATCAGCGCGT
TATTGAAGGACGCATCTGCACAGCAGCAAGTCATGGCAATGTCTGATGAT
GAATCGTTCGTCACACCGCTTCTTATAGCAGAGTCTGAAGGACATACAGA
AGCTGTGCGAGAATTGCTCACGTGCTCTCCGCAGGTTCAGCTGACGTATA
GGTCTCCATCGGGTGCAACGCCACTGATGGTGGCCGTGGATGGGCGCCAC
TCCAACAATCACGAGATCCTGATGGTCTTGATACTTGCCGGATTGCCATT
GCAGCAACTGGTCGACTTTGAATCGCCAGCAGTGAGTGCAACAATGTCAG
CAGGCAGCTACAACTATGGACTGCATGTAATCACCGAGACGCTGCAGCGT
CTGCAGTCATACAACTCGTATGCTGAATACGCGAGTGGAGCAAGAAGGGG
TGGCGGCTTCAGAGGGCGCAGGTCTCGCAGCCTAGGACGGTAG
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