mRNA_1482 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132860
Unique NamemRNA_1482
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132860 vs. uniprot
Match: A0A835ZEH2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.230e-18
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 CECGKARPSFGFEGDDRATCCALCKADNMTDIKKRRCV 114
            CECGKARPSFGFEGDDRATCCALCKADNMTDIKKRRCV
Sbjct:    1 CECGKARPSFGFEGDDRATCCALCKADNMTDIKKRRCV 38
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BLAST of jgi.p|Trimin1|132860 vs. uniprot
Match: A0A813F4K6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813F4K6_POLGL)

HSP 1 Score: 54.3 bits (129), Expect = 5.400e-6
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 CECGKARPSFGFEGDDRATCCALCKADNMTDI 96
            C CG+ RPSFGF GD RATCC+ CKA+ M DI
Sbjct:   26 CTCGQRRPSFGFPGDARATCCSQCKAEYMVDI 57
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BLAST of jgi.p|Trimin1|132860 vs. uniprot
Match: A0A835Z0G3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.040e-6
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 CECGKARPSFGFEGDDRATCCALCKADNM 87
            C CGK++PSFG E D+RATCCALCK+D+M
Sbjct:    9 CSCGKSQPSFGVEEDERATCCALCKSDDM 37
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132860 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZEH2_9STRA1.230e-18100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A813F4K6_POLGL5.400e-668.75Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A835Z0G3_9STRA7.040e-672.41Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1165944..1166468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132860|gw1.18.65.1
Hectar predicted targeting categoryother localisation
TranscriptId133182
TrackFilteredModels1
ProteinId132860
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132860gene_1482Tribonema minus UTEX_B_3156 geneContig_18 1165944..1166468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1482_1exon_1482_1Tribonema minus UTEX_B_3156 exonContig_18 1165944..1166468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1482CDS_1482Tribonema minus UTEX_B_3156 CDSContig_18 1165944..1166468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132860Trimin1|132860|gw1.18.65.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1165944..1166468 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1482 ID=mRNA_1482|Name=jgi.p|Trimin1|132860|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_18:1165944..1166468- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTGAATGTGGCAAGGCACGACCGAGCTTCGGTTTTGAAGGAGATGATCG
TGCCACATGCTGTGCACTTTGCAAGGCTGACAATATGACCGACATAAAGA
AGCGACGTTGTGTATGTGGCAGTGCAAGTCCGTGCTTCGGTTTTGAGGGC
GACGATCGCGCCACCTGCTGTGCACTTTGCAAAAACGTCAACATGATTGA
CATACACAACAGGCGCTGCAACTGTGGCAAGGCAAGACCAAAGTTTGGTT
ATGGGAGTGACACACGCCCCACATGCTGTGAAATTTGCAAGCACGACAAT
ATGATCATCCTCAACAGGCGCTGCAACTGTGGCAAGGTACAACCGAGCTT
TGGCTTCGTTGGCGACGCACGCGCCACCTGCTGTGCACTTTGCAAGGACG
ACAAAATGGTCAACATCGTCACTAGGCGGTGCAACTGTGGCAAGGTACAA
CCGGTCTTTGGCCTCGACGGCGATGCACGCGCCACATGCTGTGCCCTCTG
CAAGGACAACGATATGATCGACGTT
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protein sequence of jgi.p|Trimin1|132860

>Trimin1|132860|gw1.18.65.1 ID=Trimin1|132860|gw1.18.65.1|Name=jgi.p|Trimin1|132860|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
CECGKARPSFGFEGDDRATCCALCKADNMTDIKKRRCVCGSASPCFGFEG
DDRATCCALCKNVNMIDIHNRRCNCGKARPKFGYGSDTRPTCCEICKHDN
MIILNRRCNCGKVQPSFGFVGDARATCCALCKDDKMVNIVTRRCNCGKVQ
PVFGLDGDARATCCALCKDNDMIDV
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mRNA from alignment at Contig_18:1165944..1166468-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1482 ID=mRNA_1482|Name=jgi.p|Trimin1|132860|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_18:1165944..1166468- (Tribonema minus UTEX_B_3156 )
TGTGAATGTGGCAAGGCACGACCGAGCTTCGGTTTTGAAGGAGATGATCG
TGCCACATGCTGTGCACTTTGCAAGGCTGACAATATGACCGACATAAAGA
AGCGACGTTGTGTATGTGGCAGTGCAAGTCCGTGCTTCGGTTTTGAGGGC
GACGATCGCGCCACCTGCTGTGCACTTTGCAAAAACGTCAACATGATTGA
CATACACAACAGGCGCTGCAACTGTGGCAAGGCAAGACCAAAGTTTGGTT
ATGGGAGTGACACACGCCCCACATGCTGTGAAATTTGCAAGCACGACAAT
ATGATCATCCTCAACAGGCGCTGCAACTGTGGCAAGGTACAACCGAGCTT
TGGCTTCGTTGGCGACGCACGCGCCACCTGCTGTGCACTTTGCAAGGACG
ACAAAATGGTCAACATCGTCACTAGGCGGTGCAACTGTGGCAAGGTACAA
CCGGTCTTTGGCCTCGACGGCGATGCACGCGCCACATGCTGTGCCCTCTG
CAAGGACAACGATATGATCGACGTT
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Coding sequence (CDS) from alignment at Contig_18:1165944..1166468-

>mRNA_1482 ID=mRNA_1482|Name=jgi.p|Trimin1|132860|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_18:1165944..1166468- (Tribonema minus UTEX_B_3156 )
TGTGAATGTGGCAAGGCACGACCGAGCTTCGGTTTTGAAGGAGATGATCG
TGCCACATGCTGTGCACTTTGCAAGGCTGACAATATGACCGACATAAAGA
AGCGACGTTGTGTATGTGGCAGTGCAAGTCCGTGCTTCGGTTTTGAGGGC
GACGATCGCGCCACCTGCTGTGCACTTTGCAAAAACGTCAACATGATTGA
CATACACAACAGGCGCTGCAACTGTGGCAAGGCAAGACCAAAGTTTGGTT
ATGGGAGTGACACACGCCCCACATGCTGTGAAATTTGCAAGCACGACAAT
ATGATCATCCTCAACAGGCGCTGCAACTGTGGCAAGGTACAACCGAGCTT
TGGCTTCGTTGGCGACGCACGCGCCACCTGCTGTGCACTTTGCAAGGACG
ACAAAATGGTCAACATCGTCACTAGGCGGTGCAACTGTGGCAAGGTACAA
CCGGTCTTTGGCCTCGACGGCGATGCACGCGCCACATGCTGTGCCCTCTG
CAAGGACAACGATATGATCGACGTT
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