Trimin1|353650|estExt_Genemark1.C_Ctg_1760007 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353650
Unique NameTrimin1|353650|estExt_Genemark1.C_Ctg_1760007
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length195
Homology
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BLAST of jgi.p|Trimin1|353650 vs. uniprot
Match: A0A835Z727_9STRA (Ricin B-type lectin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z727_9STRA)

HSP 1 Score: 400 bits (1028), Expect = 2.810e-141
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 
Query:    1 MVNMQQMLPAMTALLSLAQLCVSQDVLGVVTFIEGALSAGDGQRLQSVAYDGQCLDNDGSISLDKYMGLYPCAETGGASQYMRYGETNIFFQSGAFTLCLNDWGDSTVHGAPCDWGDDSGNTQFFFSADPAGELKEPFNVPYFRVHSVRGGTDYCLSARQEAVSGSLSRFANMLNCDGNADQLWWVAASGFQAT 194
            MVNMQQMLPAMTALLSLAQLCVSQDVLGVVTFIEGALSAGDGQRLQSVAYDGQCLDNDGSISLDKYMGLYPCAETGGASQYMRYGETNIFFQSGAFTLCLNDWGDSTVHGAPCDWGDDSGNTQFFFSADPAGELKEPFNVPYFRVHSVRGGTDYCLSARQEAVSGSLSRFANMLNCDGNADQLWWVAASGFQAT
Sbjct:    1 MVNMQQMLPAMTALLSLAQLCVSQDVLGVVTFIEGALSAGDGQRLQSVAYDGQCLDNDGSISLDKYMGLYPCAETGGASQYMRYGETNIFFQSGAFTLCLNDWGDSTVHGAPCDWGDDSGNTQFFFSADPAGELKEPFNVPYFRVHSVRGGTDYCLSARQEAVSGSLSRFANMLNCDGNADQLWWVAASGFQAT 194
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353650 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z727_9STRA2.810e-141100.00Ricin B-type lectin domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.80.10.50coord: 40..190
e-value: 5.9E-9
score: 38.3
IPR000772Ricin B, lectin domainPROSITEPS50231RICIN_B_LECTINcoord: 41..187
score: 12.4065
IPR000772Ricin B, lectin domainCDDcd00161RICINcoord: 44..185
e-value: 9.2689E-4
score: 35.9443
IPR035992Ricin B-like lectinsSUPERFAMILY50370Ricin B-like lectinscoord: 44..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_176contigContig_176:87836..88420 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353650mRNA_16976Tribonema minus UTEX_B_3156 mRNAContig_176 86812..88728 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353650|estExt_Genemark1.C_Ctg_1760007 ID=Trimin1|353650|estExt_Genemark1.C_Ctg_1760007|Name=jgi.p|Trimin1|353650|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=195bp
MVNMQQMLPAMTALLSLAQLCVSQDVLGVVTFIEGALSAGDGQRLQSVAY
DGQCLDNDGSISLDKYMGLYPCAETGGASQYMRYGETNIFFQSGAFTLCL
NDWGDSTVHGAPCDWGDDSGNTQFFFSADPAGELKEPFNVPYFRVHSVRG
GTDYCLSARQEAVSGSLSRFANMLNCDGNADQLWWVAASGFQAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
IPR035992Ricin_B-like_lectins