mRNA_16976 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353650
Unique NamemRNA_16976
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353650 vs. uniprot
Match: A0A835Z727_9STRA (Ricin B-type lectin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z727_9STRA)

HSP 1 Score: 400 bits (1028), Expect = 3.310e-137
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 2 
Query:   38 MVNMQQMLPAMTALLSLAQLCVSQDVLGVVTFIEGALSAGDGQRLQSVAYDGQCLDNDGSISLDKYMGLYPCAETGGASQYMRYGETNIFFQSGAFTLCLNDWGDSTVHGAPCDWGDDSGNTQFFFSADPAGELKEPFNVPYFRVHSVRGGTDYCLSARQEAVSGSLSRFANMLNCDGNADQLWWVAASGFQAT 619
            MVNMQQMLPAMTALLSLAQLCVSQDVLGVVTFIEGALSAGDGQRLQSVAYDGQCLDNDGSISLDKYMGLYPCAETGGASQYMRYGETNIFFQSGAFTLCLNDWGDSTVHGAPCDWGDDSGNTQFFFSADPAGELKEPFNVPYFRVHSVRGGTDYCLSARQEAVSGSLSRFANMLNCDGNADQLWWVAASGFQAT
Sbjct:    1 MVNMQQMLPAMTALLSLAQLCVSQDVLGVVTFIEGALSAGDGQRLQSVAYDGQCLDNDGSISLDKYMGLYPCAETGGASQYMRYGETNIFFQSGAFTLCLNDWGDSTVHGAPCDWGDDSGNTQFFFSADPAGELKEPFNVPYFRVHSVRGGTDYCLSARQEAVSGSLSRFANMLNCDGNADQLWWVAASGFQAT 194
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353650 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z727_9STRA3.310e-137100.00Ricin B-type lectin domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_176contigContig_176:86812..88728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353650|estExt_Genemark1.C_Ctg_1760007
Hectar predicted targeting categorysignal peptide
TranscriptId353972
TrackFilteredModels1
ProteinId353650
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353650gene_16976Tribonema minus UTEX_B_3156 geneContig_176 86812..88728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353650Trimin1|353650|estExt_Genemark1.C_Ctg_1760007Tribonema minus UTEX_B_3156 polypeptideContig_176 87836..88420 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16976_3exon_16976_3Tribonema minus UTEX_B_3156 exonContig_176 86812..87510 -
exon_16976_2exon_16976_2Tribonema minus UTEX_B_3156 exonContig_176 87833..88420 -
exon_16976_1exon_16976_1Tribonema minus UTEX_B_3156 exonContig_176 88692..88728 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16976UTR3_16976Tribonema minus UTEX_B_3156 three_prime_UTRContig_176 87833..87835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16976CDS_16976Tribonema minus UTEX_B_3156 CDSContig_176 87836..88420 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16976UTR5_16976Tribonema minus UTEX_B_3156 five_prime_UTRContig_176 88692..88728 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16976 ID=mRNA_16976|Name=jgi.p|Trimin1|353650|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1324bp|location=Sequence derived from alignment at Contig_176:86812..88728- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACCAAATTGCCAATAAGAGCAGCGAGCGCACGCAAGATGGTCAACATGC
AGCAGATGCTACCGGCGATGACGGCCCTGCTGAGCCTGGCCCAGCTGTGC
GTGAGCCAAGACGTACTGGGCGTCGTGACATTCATCGAGGGGGCATTGAG
TGCTGGCGATGGGCAGAGGTTGCAGTCAGTGGCCTACGACGGACAGTGCC
TAGACAATGACGGCTCCATATCTCTCGACAAGTACATGGGCCTGTACCCC
TGTGCAGAGACCGGCGGTGCCTCGCAGTACATGCGCTACGGCGAAACCAA
CATCTTCTTTCAGAGTGGAGCCTTCACCCTCTGCCTGAACGACTGGGGCG
ATAGCACTGTGCACGGAGCCCCTTGCGACTGGGGCGACGACAGTGGCAAC
ACACAGTTCTTCTTCTCCGCAGACCCTGCAGGCGAACTGAAGGAGCCATT
CAACGTCCCTTACTTCAGAGTGCACTCCGTACGGGGCGGCACTGACTACT
GCTTGAGTGCGCGGCAAGAGGCCGTCAGTGGGTCCCTCTCGCGCTTCGCC
AACATGCTCAACTGCGATGGCAATGCTGACCAGCTCTGGTGGGTGGCCGC
GTCTGGCTTCCAGGCTACTTGAGAGACATCCCGATGTCTCAGCCTGAGTC
ATCGGCTGTTGTAGACATCAAACTGCCTGGCAGCTCAACCTCGCCTACAT
GGGGTCACCACCAGTCTGGTCACATCGTCATCGACTTGCCCTTGGGCTAT
CCTATCAGTGACACCTTCAAGTTCCATGCCGGCTTCCAAATGCGGTGGGC
CAGGCCTTGATTCATCTGCAGTGCCACCTGCACAGCAGCTGGTGAATATT
GTGTGGAAATCACACAAAATCCATTGTGCCTGCCCCATCAATCACCATGG
TGCCGCCAACAAGACTCAAGTCTTGACTTGTGCAGTGGTCCTCGAGATTC
ATCAAATGGTAGTGGTGTGCCCCTGACGCCGCCCATGCGCCAGTTATGCT
TTGATCACACATCATTTGCCTGGACATCAACGAGGTTAGGCGTACAGACA
ACATGTTGTTTTGACAGCTGTGCATGTTGTTTTGACAGCTGTGCAGAGTG
CCGGCAGTAGCAACGTATGCAAGGTTGCATTTGTGCCTCAGTGACCGAGC
AGCCTGCAACACGCACACACTATACAGATGAAGCACAACATGATGAGAAG
CACATGAAGTTTGCCACTGCCACATGACAGCCTTAGCGGCTGCCATTAAG
GCGCCCTTGCAGTGCTGCCACACACTGGCGCCTCATCAGCATACTCTAGA
GTTCATGGGGTGAGACAACCATAA
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protein sequence of jgi.p|Trimin1|353650

>Trimin1|353650|estExt_Genemark1.C_Ctg_1760007 ID=Trimin1|353650|estExt_Genemark1.C_Ctg_1760007|Name=jgi.p|Trimin1|353650|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=195bp
MVNMQQMLPAMTALLSLAQLCVSQDVLGVVTFIEGALSAGDGQRLQSVAY
DGQCLDNDGSISLDKYMGLYPCAETGGASQYMRYGETNIFFQSGAFTLCL
NDWGDSTVHGAPCDWGDDSGNTQFFFSADPAGELKEPFNVPYFRVHSVRG
GTDYCLSARQEAVSGSLSRFANMLNCDGNADQLWWVAASGFQAT*
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mRNA from alignment at Contig_176:86812..88728-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16976 ID=mRNA_16976|Name=jgi.p|Trimin1|353650|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1917bp|location=Sequence derived from alignment at Contig_176:86812..88728- (Tribonema minus UTEX_B_3156 )
CACCAAATTGCCAATAAGAGCAGCGAGCGCACGCAAGGTAAGCACACCTG
CCGCTGCCTGCTTGTATCGCCATGCATGTCGGTTGCCCATTCCTGCGCTG
CTCCGAGAGACTCCTGATTTGAGCACGCCGTGGCTCGGGCTTTCGCTGCT
CTCTATGAGTGGCGGGCGCAAGTGTCTCGCAGCAACAGTCAACATCATCT
GCGCAATATTTATTAGTGGCCGCATGCAAGTGTGTCCTCGCGTAAGCCCA
AGTCCAAGTCCGTGTGCCAGTCACTGAAGTTTACGTACTCTCTGATGCGC
CCTTGCAGATGGTCAACATGCAGCAGATGCTACCGGCGATGACGGCCCTG
CTGAGCCTGGCCCAGCTGTGCGTGAGCCAAGACGTACTGGGCGTCGTGAC
ATTCATCGAGGGGGCATTGAGTGCTGGCGATGGGCAGAGGTTGCAGTCAG
TGGCCTACGACGGACAGTGCCTAGACAATGACGGCTCCATATCTCTCGAC
AAGTACATGGGCCTGTACCCCTGTGCAGAGACCGGCGGTGCCTCGCAGTA
CATGCGCTACGGCGAAACCAACATCTTCTTTCAGAGTGGAGCCTTCACCC
TCTGCCTGAACGACTGGGGCGATAGCACTGTGCACGGAGCCCCTTGCGAC
TGGGGCGACGACAGTGGCAACACACAGTTCTTCTTCTCCGCAGACCCTGC
AGGCGAACTGAAGGAGCCATTCAACGTCCCTTACTTCAGAGTGCACTCCG
TACGGGGCGGCACTGACTACTGCTTGAGTGCGCGGCAAGAGGCCGTCAGT
GGGTCCCTCTCGCGCTTCGCCAACATGCTCAACTGCGATGGCAATGCTGA
CCAGCTCTGGTGGGTGGCCGCGTCTGGCTTCCAGGCTACTTGAGAGGTAT
GTATGCATGTTGCACCTCCAGGAAACAGTCACTTGTATGCTATGCTACTG
TAGGTCCACATGACTGGCCCATAGGCCAACTTCAAGTTTGTGGTACTGCG
GTTCTCAAAAACCAGGGGCCTGCTCGGCTTGAGTAGCATACATTGTTGGC
ATCAATTTGTACGCCATACTTGAAGTATGGCGTTTGATGCAGGTGTATCT
ACCCGCATCAACAACATTGTACTACATGTGCATTCGCATTCTTGTTGGCG
ATGGCACATTGATGCTAATGGAGTATACCGTTCTGCTCTGCTTGCCCCTC
CCCCCCCCCCGCATGCAGACATCCCGATGTCTCAGCCTGAGTCATCGGCT
GTTGTAGACATCAAACTGCCTGGCAGCTCAACCTCGCCTACATGGGGTCA
CCACCAGTCTGGTCACATCGTCATCGACTTGCCCTTGGGCTATCCTATCA
GTGACACCTTCAAGTTCCATGCCGGCTTCCAAATGCGGTGGGCCAGGCCT
TGATTCATCTGCAGTGCCACCTGCACAGCAGCTGGTGAATATTGTGTGGA
AATCACACAAAATCCATTGTGCCTGCCCCATCAATCACCATGGTGCCGCC
AACAAGACTCAAGTCTTGACTTGTGCAGTGGTCCTCGAGATTCATCAAAT
GGTAGTGGTGTGCCCCTGACGCCGCCCATGCGCCAGTTATGCTTTGATCA
CACATCATTTGCCTGGACATCAACGAGGTTAGGCGTACAGACAACATGTT
GTTTTGACAGCTGTGCATGTTGTTTTGACAGCTGTGCAGAGTGCCGGCAG
TAGCAACGTATGCAAGGTTGCATTTGTGCCTCAGTGACCGAGCAGCCTGC
AACACGCACACACTATACAGATGAAGCACAACATGATGAGAAGCACATGA
AGTTTGCCACTGCCACATGACAGCCTTAGCGGCTGCCATTAAGGCGCCCT
TGCAGTGCTGCCACACACTGGCGCCTCATCAGCATACTCTAGAGTTCATG
GGGTGAGACAACCATAA
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Coding sequence (CDS) from alignment at Contig_176:86812..88728-

>mRNA_16976 ID=mRNA_16976|Name=jgi.p|Trimin1|353650|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=585bp|location=Sequence derived from alignment at Contig_176:86812..88728- (Tribonema minus UTEX_B_3156 )
ATGGTCAACATGCAGCAGATGCTACCGGCGATGACGGCCCTGCTGAGCCT
GGCCCAGCTGTGCGTGAGCCAAGACGTACTGGGCGTCGTGACATTCATCG
AGGGGGCATTGAGTGCTGGCGATGGGCAGAGGTTGCAGTCAGTGGCCTAC
GACGGACAGTGCCTAGACAATGACGGCTCCATATCTCTCGACAAGTACAT
GGGCCTGTACCCCTGTGCAGAGACCGGCGGTGCCTCGCAGTACATGCGCT
ACGGCGAAACCAACATCTTCTTTCAGAGTGGAGCCTTCACCCTCTGCCTG
AACGACTGGGGCGATAGCACTGTGCACGGAGCCCCTTGCGACTGGGGCGA
CGACAGTGGCAACACACAGTTCTTCTTCTCCGCAGACCCTGCAGGCGAAC
TGAAGGAGCCATTCAACGTCCCTTACTTCAGAGTGCACTCCGTACGGGGC
GGCACTGACTACTGCTTGAGTGCGCGGCAAGAGGCCGTCAGTGGGTCCCT
CTCGCGCTTCGCCAACATGCTCAACTGCGATGGCAATGCTGACCAGCTCT
GGTGGGTGGCCGCGTCTGGCTTCCAGGCTACTTGA
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