mRNA_3426 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A835ZAT7_9STRA (Glyco_hydro_81 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT7_9STRA) HSP 1 Score: 627 bits (1616), Expect = 2.840e-227 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 Query: 1 MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLRAPSGRLFLRWGGGWGKWDPLNRIKDGKPQAGLYGADSCRKGGSTAVAEHLKERLGLTWSPPS 909 MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLRAPSGRLFLRWGGGWGKWDPLNRIKDGKPQAGLYGADSCRKGGSTAVAEHLKERLGLTWSPPS Sbjct: 1 MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLRAPSGRLFLRWGGGWGKWDPLNRIKDGKPQAGLYGADSCRKGGSTAVAEHLKERLGLTWSPPS 303
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: D8LU99_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU99_ECTSI) HSP 1 Score: 168 bits (426), Expect = 1.590e-43 Identity = 94/238 (39.50%), Postives = 138/238 (57.98%), Query Frame = 1 Query: 22 TAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQ-LAMTAPFTGVLRAAVLLHPKD---EALLAQYAHVYPTGGDVAWSVEDDTMLLR 723 T +H + P LWG V PYPTGAWWLN A+ P PY +K+ G VSYSA RR+ + AD +A DLSV+ ++ +D L+VT ++ + G+++ L +GSPY+TFEF ++K +NG+ S T KL LS+ +TW++FTSE VT++ ++Q + M APF+G++R AVL HP D E L+++A+ YP GG VA+ V+ D M +R Sbjct: 124 TTKHLLRP-GPLWGAVTGPYPTGAWWLNLAIGEGDFPVAPLPYTIKSSDAGVGVSYSAMRRVESLERVADAYAADLSVSAKEGVTGRHIVKYDNLTVTLQHDAANEGNFRTLLARGSPYMTFEFAGATPRIKANGDILEINGKKAEAGA--SLFATTFKLALSNWETWVVFTSESVTWKVTSLQEVEMKAPFSGIVRVAVLPHPWDSEGEMTLSEHAYAYPRGGRVAFDVDGDGMEMR 358
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A6H5JC22_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC22_9PHAE) HSP 1 Score: 165 bits (418), Expect = 3.170e-42 Identity = 94/239 (39.33%), Postives = 138/239 (57.74%), Query Frame = 1 Query: 22 TAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGE-APVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQ-LAMTAPFTGVLRAAVLLHPKD---EALLAQYAHVYPTGGDVAWSVEDDTMLLR 723 T +H + P LWG V PYPTGAWWLN A+ P PY +K+ G VSYSA RR+ + D +A DLSV+ ++ +D L+VT ++ + G+++ L +GSPY+TFEF ++K +NG+ A V S T KL LS+ +TW++FTSE VT++ ++Q + M APF+G++R AVL P D E L+++A+ YP GG VA+ V+ D M +R Sbjct: 124 TTKHLLRP-GPLWGAVTGPYPTGAWWLNLAIGEGDFPVAPLPYTIKSSDAGVGVSYSAMRRVESLERVTDAYAADLSVSAKEGVTGRHIVKYDNLTVTLQHDAANAGNFRTLLARGSPYMTFEFAGATPRIKANGDILEINGKKAEVG---ASLFATTFKLALSNWETWVVFTSESVTWKVTSLQEVEMKAPFSGIVRVAVLPRPWDSEGEMTLSEHAYAYPRGGRVAFDVDGDRMEMR 358
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A836CER9_9STRA (Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER9_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.790e-28 Identity = 82/264 (31.06%), Postives = 123/264 (46.59%), Query Frame = 1 Query: 16 FNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTF--------------------------------------EFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKD---EALLAQYAHVYPTGGD 684 F TA HP+ P ALWG V+ PYPTGAW+ N + QP V PYAV+A G VS+SA RR ++ D+F DL+V A + H + +D LS + ++E G ++ V+GSPY+TF ++ + L A++G+ T G KL LS+ +TW+++TSE V+++ P +G+LRAA+L D E L ++A+ Y GG+ Sbjct: 131 FVTAAHPLRP-TALWGAVKPPYPTGAWFTNLVIGAGDQPVVPLPYAVRAGAHGIDVSFSAVRRQASRRRITDVFDADLTVGAAEGYLGHALTRYDNLSASVSHELRGGAAFATHLVRGSPYMTFAAEREPAAALLAXXXXXXXXXXXXXAPAMSFGPLIRAAQYKDATPTLATATSILALDGKPLKEGAT--VRGKTFKLGLSNWETWMVYTSESVSFKVEARSFTALMPMSGMLRAALLPRAGDGEAEFELNEHAYAYAKGGE 391
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A150RBA9_SORCE (Endo-1,3(4)-beta-glucanase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150RBA9_SORCE) HSP 1 Score: 119 bits (298), Expect = 2.250e-26 Identity = 82/246 (33.33%), Postives = 128/246 (52.03%), Query Frame = 1 Query: 1 MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVA---HYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVT--FEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLR 723 + + F A HP+ P A L G + P PT W+NFAL Q A PY +KA +G +S S +V A + PDL+ S A H + +FD LSVT + + GG+ V G PYVT ++ V+ ++VNGE+ TG + ++EL++GQTW+L+ S +++E++ + + P+TG LR A++ P A+L ++A V P GGD+ +V +DT +R Sbjct: 68 VVEPEFAPAPHPLDPGAVL-GELDTPLPTNTTWMNFALGEGDQRINAAPYDLKALGQG--LSISRPGVVVAS---ASVTTPDLTQLGLSARQAFTGHVIRSFDPLSVTVEWAAQ-GGTMTAPIVYGMPYVTTMYDGLTPSVRAGDGVAITSVNGEST---SPTEVTGDRFEIELNNGQTWVLYASPAISFEWDALAMNSEEPYTGSLRLALVPGPNAAAVLDEHAAVIPVGGDIKATVTEDTASVR 303
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A7S3XS80_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS80_HETAK) HSP 1 Score: 109 bits (273), Expect = 2.550e-25 Identity = 69/180 (38.33%), Postives = 96/180 (53.33%), Query Frame = 1 Query: 181 VSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAP--FTGVLRAAVLLHPKD-EALLAQYAHVYPTGGDVAWSVEDDT 711 V+Y A RR+V +D F DL +++ VA Y +D SVT +ETE GG Y+ L V+GSPY T E+ L + FS V + S +GT+ LE G WL+F S+ +T+ + ++TA FTG LRAAV P+ + LL A YPTGG A++V +DT Sbjct: 3 VAYPAARRVVTPTTQSDYFEDDLVLSSQEGYVARYATGYDAFSVTVEFETEGGGVYRNLAVRGSPYATVEYEGVTPVLH--SKFSNVTSINGADAAGVSVSGTEFLLEQEDGMRWLIFASDSITFSVDEWGTSLTASESFTGTLRAAVSQDPETLDGLLRTSAGTYPTGGAFAYAVANDT 180
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A2T9Y2C8_9FUNG (Endo-1,3(4)-beta-glucanase n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9Y2C8_9FUNG) HSP 1 Score: 92.8 bits (229), Expect = 2.520e-17 Identity = 67/239 (28.03%), Postives = 107/239 (44.77%), Query Frame = 1 Query: 16 FNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGS--YKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNM-QLAMTAPFTGVLRAAVLLHPK----DEALLAQYAHVYPTGGDVAWSVEDDT 711 F++ Q+ P+A LWGN+Q PYPT WW+NFAL G QP PY A EG +S+ + V + + + + V +FD +++T ++ ++ S + VKGSPY T ++ N PL + + A + T + T K L +G+ W L+ S ++ + +L P+TG LR P + L +Y P G +V +S T Sbjct: 29 FSSVQNSYKPNA-LWGNIQSPYPTNKWWMNFALEGGDQPIGCLPYTTTASIEG--ISFFYPQPSVSSISVTMSSMSEWTAGSREGFSSRQVSSFDDMTMTYSWTSKASSSDYMSVPLVKGSPYFTLKYKNTT----PLLAYKS----AKITSATRDSEMTSFKFTLENGRVWGLYASSPISLFFTQSGELISDKPYTGYLRFVYFPDPSKYVDNHVALRKYKDAIPIGVNVTFSANTIT 256
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A8I6YIN4_HORVV (Glyco_hydro_81 domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6YIN4_HORVV) HSP 1 Score: 84.3 bits (207), Expect = 7.360e-15 Identity = 66/211 (31.28%), Postives = 100/211 (47.39%), Query Frame = 1 Query: 67 VQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVA----HYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLK-PLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGD 684 + P PT ++ NF L QP +PY+V++ G V Y + R FA DL+V++ S A A H V AFD LS+T + S + V G P+VT + +A A AP + T+ +L+++SGQT+LL+ S + + ++ T F+ V+R A L P EA+L QY+ YPT G+ Sbjct: 16 ILAPLPTNCFFQNFTLKNGDQPEYIHPYSVRSAAAGLTVCYPS--RSHSPSFDIQTFAADLTVSSPSDAAAAGQPHRVIAFDDLSIT----LDISPSLRAFLVHGCPFVTVTTAEAAGPVDVSVASVHAFLEAAPCD-----DVRTKWRLQMNSGQTFLLYASAPIGLQQASVTQLATPGFSSVIRIAYLPDPAMEAVLDQYSRCYPTAGE 215
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A6S8U7P2_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8U7P2_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.450e-14 Identity = 76/259 (29.34%), Postives = 102/259 (39.38%), Query Frame = 1 Query: 16 FNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQP------AVAYPYAVKARPE-GPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRT------------------------------------DSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAH 663 F HP +P LWGNV+RP+PTGAWW N + G A A PY V P+ G ++ Y + A + DL V+ V A+D L++T D G LF +GSPYVTF LK ALF+ + V T + TG + LS+GQ W L+ S VT +++ T F GV+RAAV+ + L AH Sbjct: 74 FEARTHPDTP-TKLWGNVKRPFPTGAWWTNLVVGGPSSSGDGLGTAFATPYTVSVLPDKGVVLGYGEVLATNDSLTLAT--SQDLIVSLKGGLEKREVVAYDDLTMTMRCSA-DKGQIDALFARGSPYVTFRVDGVP-SLKSDALFTDLQAVDAVTNETMPKACAAYPSCILASMKGDCCPQPSGVKHPCCSGSLGAQTGEVFSVALSNGQAWRLYFSSPVTLTWDSTGAHTTHSFQGVMRAAVVPSNSTKDALMLDAH 327
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: UPI0010A5303E (probable endo-1,3(4)-beta-glucanase ARB_01444 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A5303E) HSP 1 Score: 83.6 bits (205), Expect = 3.450e-14 Identity = 59/214 (27.57%), Postives = 105/214 (49.07%), Query Frame = 1 Query: 67 VQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSY---SATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVL--LHPKDEALLAQYAHVYPTGGDVAW 693 + P PT +++ NF L +P +PY +K +SY S+T + Q AD+ VT H + +F L VT + + + + V+GSP++T TN V S + ++ +++A+ T+ L+LS+GQTWL++TS + ++ ++ + F+G++R A+L +PK E +L Q+ YP GD + Sbjct: 98 LSTPLPTNSFFQNFVL-NNVEPEYIHPYIIKPCLSSLSLSYPSRSSTSTFISQIFTADLTISASEVTDHHSQKTHVISSFSDLGVTLEFPSSN---MQFFLVRGSPFLTVNVTNQTV-------ISISTVHSILSLSSNNASLTKYTLQLSNGQTWLIYTSSPIGLNHDPSKIT-SEEFSGIIRIALLPDSNPKLETILNQFCFCYPVSGDATF 299 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3426 ID=mRNA_3426|Name=jgi.p|Trimin1|347951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=912bp|location=Sequence derived from alignment at Contig_17:852779..856079- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGCAGGCGAACTTCAACACGGCGCAGCACCCCATGTCGCCCGACGCback to top protein sequence of jgi.p|Trimin1|347951 >Trimin1|347951|estExt_Genemark1.C_Ctg_170113 ID=Trimin1|347951|estExt_Genemark1.C_Ctg_170113|Name=jgi.p|Trimin1|347951|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=304bp MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYback to top mRNA from alignment at Contig_17:852779..856079- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3426 ID=mRNA_3426|Name=jgi.p|Trimin1|347951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3301bp|location=Sequence derived from alignment at Contig_17:852779..856079- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_17:852779..856079- >mRNA_3426 ID=mRNA_3426|Name=jgi.p|Trimin1|347951|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=912bp|location=Sequence derived from alignment at Contig_17:852779..856079- (Tribonema minus UTEX_B_3156 )back to top |