mRNA_3426 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347951
Unique NamemRNA_3426
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A835ZAT7_9STRA (Glyco_hydro_81 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT7_9STRA)

HSP 1 Score: 627 bits (1616), Expect = 2.840e-227
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
Query:    1 MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLRAPSGRLFLRWGGGWGKWDPLNRIKDGKPQAGLYGADSCRKGGSTAVAEHLKERLGLTWSPPS 909
            MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLRAPSGRLFLRWGGGWGKWDPLNRIKDGKPQAGLYGADSCRKGGSTAVAEHLKERLGLTWSPPS
Sbjct:    1 MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLRAPSGRLFLRWGGGWGKWDPLNRIKDGKPQAGLYGADSCRKGGSTAVAEHLKERLGLTWSPPS 303          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: D8LU99_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU99_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.590e-43
Identity = 94/238 (39.50%), Postives = 138/238 (57.98%), Query Frame = 1
Query:   22 TAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQ-LAMTAPFTGVLRAAVLLHPKD---EALLAQYAHVYPTGGDVAWSVEDDTMLLR 723
            T +H + P   LWG V  PYPTGAWWLN A+     P    PY +K+   G  VSYSA RR+   +  AD +A DLSV+        ++  +D L+VT  ++  + G+++ L  +GSPY+TFEF     ++K       +NG+        S   T  KL LS+ +TW++FTSE VT++  ++Q + M APF+G++R AVL HP D   E  L+++A+ YP GG VA+ V+ D M +R
Sbjct:  124 TTKHLLRP-GPLWGAVTGPYPTGAWWLNLAIGEGDFPVAPLPYTIKSSDAGVGVSYSAMRRVESLERVADAYAADLSVSAKEGVTGRHIVKYDNLTVTLQHDAANEGNFRTLLARGSPYMTFEFAGATPRIKANGDILEINGKKAEAGA--SLFATTFKLALSNWETWVVFTSESVTWKVTSLQEVEMKAPFSGIVRVAVLPHPWDSEGEMTLSEHAYAYPRGGRVAFDVDGDGMEMR 358          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A6H5JC22_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC22_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.170e-42
Identity = 94/239 (39.33%), Postives = 138/239 (57.74%), Query Frame = 1
Query:   22 TAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGE-APVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQ-LAMTAPFTGVLRAAVLLHPKD---EALLAQYAHVYPTGGDVAWSVEDDTMLLR 723
            T +H + P   LWG V  PYPTGAWWLN A+     P    PY +K+   G  VSYSA RR+   +   D +A DLSV+        ++  +D L+VT  ++  + G+++ L  +GSPY+TFEF     ++K       +NG+ A V     S   T  KL LS+ +TW++FTSE VT++  ++Q + M APF+G++R AVL  P D   E  L+++A+ YP GG VA+ V+ D M +R
Sbjct:  124 TTKHLLRP-GPLWGAVTGPYPTGAWWLNLAIGEGDFPVAPLPYTIKSSDAGVGVSYSAMRRVESLERVTDAYAADLSVSAKEGVTGRHIVKYDNLTVTLQHDAANAGNFRTLLARGSPYMTFEFAGATPRIKANGDILEINGKKAEVG---ASLFATTFKLALSNWETWVVFTSESVTWKVTSLQEVEMKAPFSGIVRVAVLPRPWDSEGEMTLSEHAYAYPRGGRVAFDVDGDRMEMR 358          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A836CER9_9STRA (Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.790e-28
Identity = 82/264 (31.06%), Postives = 123/264 (46.59%), Query Frame = 1
Query:   16 FNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTF--------------------------------------EFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKD---EALLAQYAHVYPTGGD 684
            F TA HP+ P  ALWG V+ PYPTGAW+ N  +    QP V  PYAV+A   G  VS+SA RR   ++   D+F  DL+V  A   + H +  +D LS + ++E   G ++    V+GSPY+TF                                      ++ +    L       A++G+      T    G   KL LS+ +TW+++TSE V+++          P +G+LRAA+L    D   E  L ++A+ Y  GG+
Sbjct:  131 FVTAAHPLRP-TALWGAVKPPYPTGAWFTNLVIGAGDQPVVPLPYAVRAGAHGIDVSFSAVRRQASRRRITDVFDADLTVGAAEGYLGHALTRYDNLSASVSHELRGGAAFATHLVRGSPYMTFAAEREPAAALLAXXXXXXXXXXXXXAPAMSFGPLIRAAQYKDATPTLATATSILALDGKPLKEGAT--VRGKTFKLGLSNWETWMVYTSESVSFKVEARSFTALMPMSGMLRAALLPRAGDGEAEFELNEHAYAYAKGGE 391          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A150RBA9_SORCE (Endo-1,3(4)-beta-glucanase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150RBA9_SORCE)

HSP 1 Score: 119 bits (298), Expect = 2.250e-26
Identity = 82/246 (33.33%), Postives = 128/246 (52.03%), Query Frame = 1
Query:    1 MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVA---HYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVT--FEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLR 723
            + +  F  A HP+ P A L G +  P PT   W+NFAL    Q   A PY +KA  +G  +S S    +V     A +  PDL+    S   A   H + +FD LSVT  +  + GG+     V G PYVT  ++     V+       ++VNGE+         TG + ++EL++GQTW+L+ S  +++E++ + +    P+TG LR A++  P   A+L ++A V P GGD+  +V +DT  +R
Sbjct:   68 VVEPEFAPAPHPLDPGAVL-GELDTPLPTNTTWMNFALGEGDQRINAAPYDLKALGQG--LSISRPGVVVAS---ASVTTPDLTQLGLSARQAFTGHVIRSFDPLSVTVEWAAQ-GGTMTAPIVYGMPYVTTMYDGLTPSVRAGDGVAITSVNGEST---SPTEVTGDRFEIELNNGQTWVLYASPAISFEWDALAMNSEEPYTGSLRLALVPGPNAAAVLDEHAAVIPVGGDIKATVTEDTASVR 303          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A7S3XS80_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS80_HETAK)

HSP 1 Score: 109 bits (273), Expect = 2.550e-25
Identity = 69/180 (38.33%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  181 VSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAP--FTGVLRAAVLLHPKD-EALLAQYAHVYPTGGDVAWSVEDDT 711
            V+Y A RR+V     +D F  DL +++    VA Y   +D  SVT  +ETE GG Y+ L V+GSPY T E+      L   + FS V      +    S +GT+  LE   G  WL+F S+ +T+  +    ++TA   FTG LRAAV   P+  + LL   A  YPTGG  A++V +DT
Sbjct:    3 VAYPAARRVVTPTTQSDYFEDDLVLSSQEGYVARYATGYDAFSVTVEFETEGGGVYRNLAVRGSPYATVEYEGVTPVLH--SKFSNVTSINGADAAGVSVSGTEFLLEQEDGMRWLIFASDSITFSVDEWGTSLTASESFTGTLRAAVSQDPETLDGLLRTSAGTYPTGGAFAYAVANDT 180          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A2T9Y2C8_9FUNG (Endo-1,3(4)-beta-glucanase n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9Y2C8_9FUNG)

HSP 1 Score: 92.8 bits (229), Expect = 2.520e-17
Identity = 67/239 (28.03%), Postives = 107/239 (44.77%), Query Frame = 1
Query:   16 FNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGS--YKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNM-QLAMTAPFTGVLRAAVLLHPK----DEALLAQYAHVYPTGGDVAWSVEDDT 711
            F++ Q+   P+A LWGN+Q PYPT  WW+NFAL G  QP    PY   A  EG  +S+   +  V           + +  +     +  V +FD +++T ++ ++   S    +  VKGSPY T ++ N      PL  + +    A +   T  +  T  K  L +G+ W L+ S  ++  +    +L    P+TG LR      P     +   L +Y    P G +V +S    T
Sbjct:   29 FSSVQNSYKPNA-LWGNIQSPYPTNKWWMNFALEGGDQPIGCLPYTTTASIEG--ISFFYPQPSVSSISVTMSSMSEWTAGSREGFSSRQVSSFDDMTMTYSWTSKASSSDYMSVPLVKGSPYFTLKYKNTT----PLLAYKS----AKITSATRDSEMTSFKFTLENGRVWGLYASSPISLFFTQSGELISDKPYTGYLRFVYFPDPSKYVDNHVALRKYKDAIPIGVNVTFSANTIT 256          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A8I6YIN4_HORVV (Glyco_hydro_81 domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6YIN4_HORVV)

HSP 1 Score: 84.3 bits (207), Expect = 7.360e-15
Identity = 66/211 (31.28%), Postives = 100/211 (47.39%), Query Frame = 1
Query:   67 VQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVA----HYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLK-PLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAHVYPTGGD 684
            +  P PT  ++ NF L    QP   +PY+V++   G  V Y +  R          FA DL+V++ S A A    H V AFD LS+T     +   S +   V G P+VT         +   +A   A    AP +        T+ +L+++SGQT+LL+ S  +  +  ++    T  F+ V+R A L  P  EA+L QY+  YPT G+
Sbjct:   16 ILAPLPTNCFFQNFTLKNGDQPEYIHPYSVRSAAAGLTVCYPS--RSHSPSFDIQTFAADLTVSSPSDAAAAGQPHRVIAFDDLSIT----LDISPSLRAFLVHGCPFVTVTTAEAAGPVDVSVASVHAFLEAAPCD-----DVRTKWRLQMNSGQTFLLYASAPIGLQQASVTQLATPGFSSVIRIAYLPDPAMEAVLDQYSRCYPTAGE 215          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: A0A6S8U7P2_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8U7P2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.450e-14
Identity = 76/259 (29.34%), Postives = 102/259 (39.38%), Query Frame = 1
Query:   16 FNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQP------AVAYPYAVKARPE-GPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRT------------------------------------DSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVLLHPKDEALLAQYAH 663
            F    HP +P   LWGNV+RP+PTGAWW N  + G          A A PY V   P+ G ++ Y       +    A   + DL V+         V A+D L++T      D G    LF +GSPYVTF        LK  ALF+ +     V   T                                     + TG    + LS+GQ W L+ S  VT  +++     T  F GV+RAAV+     +  L   AH
Sbjct:   74 FEARTHPDTP-TKLWGNVKRPFPTGAWWTNLVVGGPSSSGDGLGTAFATPYTVSVLPDKGVVLGYGEVLATNDSLTLAT--SQDLIVSLKGGLEKREVVAYDDLTMTMRCSA-DKGQIDALFARGSPYVTFRVDGVP-SLKSDALFTDLQAVDAVTNETMPKACAAYPSCILASMKGDCCPQPSGVKHPCCSGSLGAQTGEVFSVALSNGQAWRLYFSSPVTLTWDSTGAHTTHSFQGVMRAAVVPSNSTKDALMLDAH 327          
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Match: UPI0010A5303E (probable endo-1,3(4)-beta-glucanase ARB_01444 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A5303E)

HSP 1 Score: 83.6 bits (205), Expect = 3.450e-14
Identity = 59/214 (27.57%), Postives = 105/214 (49.07%), Query Frame = 1
Query:   67 VQRPYPTGAWWLNFALPGEPQPAVAYPYAVKARPEGPLVSY---SATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFDQLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGEAPVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTGVLRAAVL--LHPKDEALLAQYAHVYPTGGDVAW 693
            +  P PT +++ NF L    +P   +PY +K       +SY   S+T   + Q   AD+      VT       H + +F  L VT  + + +    +   V+GSP++T   TN  V        S     + ++  +++A+ T+  L+LS+GQTWL++TS  +   ++  ++  +  F+G++R A+L   +PK E +L Q+   YP  GD  +
Sbjct:   98 LSTPLPTNSFFQNFVL-NNVEPEYIHPYIIKPCLSSLSLSYPSRSSTSTFISQIFTADLTISASEVTDHHSQKTHVISSFSDLGVTLEFPSSN---MQFFLVRGSPFLTVNVTNQTV-------ISISTVHSILSLSSNNASLTKYTLQLSNGQTWLIYTSSPIGLNHDPSKIT-SEEFSGIIRIALLPDSNPKLETILNQFCFCYPVSGDATF 299          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347951 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAT7_9STRA2.840e-227100.00Glyco_hydro_81 domain-containing protein n=1 Tax=T... [more]
D8LU99_ECTSI1.590e-4339.50Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JC22_9PHAE3.170e-4239.33Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
A0A836CER9_9STRA2.790e-2831.06Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus... [more]
A0A150RBA9_SORCE2.250e-2633.33Endo-1,3(4)-beta-glucanase n=1 Tax=Sorangium cellu... [more]
A0A7S3XS80_HETAK2.550e-2538.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2T9Y2C8_9FUNG2.520e-1728.03Endo-1,3(4)-beta-glucanase n=1 Tax=Smittium simuli... [more]
A0A8I6YIN4_HORVV7.360e-1531.28Glyco_hydro_81 domain-containing protein n=1 Tax=H... [more]
A0A6S8U7P2_9STRA1.450e-1429.34Endo-1,3(4)-beta-glucanase n=1 Tax=Pelagomonas cal... [more]
UPI0010A5303E3.450e-1427.57probable endo-1,3(4)-beta-glucanase ARB_01444 n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:852779..856079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347951|estExt_Genemark1.C_Ctg_170113
BRITEko00000,ko01000
KEGG koko:K01180
EC3.2.1.6
Descriptionglucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5498@1|root,KOG2254@2759|Eukaryota
Evalue2.6e-44
Seed ortholog2880.D8LU99
Hectar predicted targeting categoryother localisation
TranscriptId348273
TrackFilteredModels1
ProteinId347951
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347951gene_3426Tribonema minus UTEX_B_3156 geneContig_17 852779..856079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347951Trimin1|347951|estExt_Genemark1.C_Ctg_170113Tribonema minus UTEX_B_3156 polypeptideContig_17 852779..856079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3426_6exon_3426_6Tribonema minus UTEX_B_3156 exonContig_17 852779..852937 -
exon_3426_5exon_3426_5Tribonema minus UTEX_B_3156 exonContig_17 853014..853044 -
exon_3426_4exon_3426_4Tribonema minus UTEX_B_3156 exonContig_17 854008..854096 -
exon_3426_3exon_3426_3Tribonema minus UTEX_B_3156 exonContig_17 854472..854654 -
exon_3426_2exon_3426_2Tribonema minus UTEX_B_3156 exonContig_17 855127..855332 -
exon_3426_1exon_3426_1Tribonema minus UTEX_B_3156 exonContig_17 855836..856079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3426CDS_3426Tribonema minus UTEX_B_3156 CDSContig_17 855836..856079 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3426 ID=mRNA_3426|Name=jgi.p|Trimin1|347951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=912bp|location=Sequence derived from alignment at Contig_17:852779..856079- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGGCGAACTTCAACACGGCGCAGCACCCCATGTCGCCCGACGC
GGCCCTCTGGGGCAACGTCCAGCGCCCGTACCCCACGGGCGCCTGGTGGC
TCAACTTTGCGCTGCCGGGCGAGCCGCAGCCCGCCGTCGCGTACCCCTAC
GCCGTCAAGGCGCGCCCCGAGGGGCCACTCGTCAGCTACAGCGCGACCCG
GCGCCTCGTGGAGCAGAAGATCTTTGCGGACATCTTCGCACCCGACCTGA
GCGTCACCACGGCGAGCCCCGCCGTCGCGCACTACGTCGACGCCTTCGAC
CAGCTCAGCGTGACCGAGACGTATGAGACGGAGGACGGGGGGTCGTACAA
GCTGCTCTTTGTCAAGGGGTCCCCTTACGTGACGTTTGAGTTCACCAACT
GCCAGGTGCAGCTCAAGCCGCTGGCGCTGTTCAGCGCCGTCAACGGCGAG
GCGCCGGTGAACTGGCGCACAGACTCCGCCACCGGCACGCAGCTCAAGCT
GGAGCTCAGCAGCGGCCAGACGTGGCTGCTGTTCACCAGCGAGGAGGTCA
CGTACGAGTACAACAACATGCAGCTCGCCATGACGGCGCCGTTCACGGGC
GTGCTGCGCGCGGCAGTGCTGCTGCATCCAAAGGACGAGGCGCTGCTCGC
ACAGTACGCGCACGTGTACCCCACCGGCGGCGACGTGGCGTGGAGCGTTG
AGGACGACACCATGCTCTTGAGGGCGCCCAGCGGCAGGCTGTTCCTCCGC
TGGGGGGGCGGGTGGGGGAAATGGGACCCGCTCAACCGCATTAAAGACGG
CAAGCCCCAGGCCGGCCTCTACGGCGCAGACAGCTGCCGGAAAGGGGGCT
CTACGGCGGTGGCGGAGCATCTCAAGGAGCGCCTCGGCCTGACGTGGTCC
CCCCCGAGCTGA
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protein sequence of jgi.p|Trimin1|347951

>Trimin1|347951|estExt_Genemark1.C_Ctg_170113 ID=Trimin1|347951|estExt_Genemark1.C_Ctg_170113|Name=jgi.p|Trimin1|347951|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=304bp
MAQANFNTAQHPMSPDAALWGNVQRPYPTGAWWLNFALPGEPQPAVAYPY
AVKARPEGPLVSYSATRRLVEQKIFADIFAPDLSVTTASPAVAHYVDAFD
QLSVTETYETEDGGSYKLLFVKGSPYVTFEFTNCQVQLKPLALFSAVNGE
APVNWRTDSATGTQLKLELSSGQTWLLFTSEEVTYEYNNMQLAMTAPFTG
VLRAAVLLHPKDEALLAQYAHVYPTGGDVAWSVEDDTMLLRAPSGRLFLR
WGGGWGKWDPLNRIKDGKPQAGLYGADSCRKGGSTAVAEHLKERLGLTWS
PPS*
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mRNA from alignment at Contig_17:852779..856079-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3426 ID=mRNA_3426|Name=jgi.p|Trimin1|347951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3301bp|location=Sequence derived from alignment at Contig_17:852779..856079- (Tribonema minus UTEX_B_3156 )
ATGGCGCAGGCGAACTTCAACACGGCGCAGCACCCCATGTCGCCCGACGC GGCCCTCTGGGGCAACGTCCAGCGCCCGTACCCCACGGGCGCCTGGTGGC TCAACTTTGCGCTGCCGGGCGAGCCGCAGCCCGCCGTCGCGTACCCCTAC GCCGTCAAGGCGCGCCCCGAGGGGCCACTCGTCAGCTACAGCGCGACCCG GCGCCTCGTGGAGCAGAAGATCTTTGCGGACATCTTCGCACCCGGTGCGT GGGCGTTGTGGCCGTCAGAAGCGTCGTGTTCCCCCAAAGCAGTCGTGTTG TAGTGTACGTAGAAAATTGGCAGGTGTCACCAAGTAGTTGCGTGCTTTGG AGCTCTTGAAATTCTTGGGTTGAGCGCTGCTGTGAAAGGTCATTGCCGCT GCCGCTGCCGTGGCGCTGAGCACTGCGGGCGTCCCTTAGTCTCAAGAGCG CGCTTCACTGTGTAGTACGCAGTACTTCTTGCTCAGGGCGCAGAACAGCT TTAGTGGTTGATGTTGATGTGAAGCTCGCCAGCAGAAGCCACACGAACCT TGTTACCCGAGTCCCTCCTTCGCATTGTGCATGTGACACGCGCGTGCATG AGCAGTCCAGCACATGCCGTGTGCATGCTCGAAAAGCATACAAGCATGGC GCGGCTAGCATTCAAGCCTCTCAGCCACTGCTCGCTGCAGCAACGCTCAA CTCATACACAACAATCCGCGACGAAACTGTTTTGCGCACGCGCGCAGACC TGAGCGTCACCACGGCGAGCCCCGCCGTCGCGCACTACGTCGACGCCTTC GACCAGCTCAGCGTGACCGAGACGTATGAGACGGAGGACGGGGGGTCGTA CAAGCTGCTCTTTGTCAAGGGGTCCCCTTACGTGACGTTTGAGTTCACCA ACTGCCAGGTGCAGCTCAAGCCGCTGGCGCTGTTCAGCGCCGTCAACGGC GAGGTGAGTCTCCCTTGCGACTCTTTGACTCGGATCGCGACTCTCAGACT CTGTGACTGGTGGCGTGTGACTCGCTCACTCACGCTTCGTCAGTCCCATG GTCGCCGAATTCCGCTTTTACTGGGGCGGGCGATGTGAGCCGCTAGCACA TAGAAGAGCAGAAAGGCTCTGTGGCGCAACGTGAACTGATACATTTAAGA GCGGCTGTGTGGCAAGCCGCATCGCATGTTCTGGTGGCAGCGCTCTCCGC AATGTGTCCGCACACGCGCAGCCAGTGCCAGTGCTCAGCTGGTGCCGCCA CAGCGCTCAGGCGCTGCACACACCACACCGCTCAGCAACTCGTCTCGTAT GAAGAGTCCCATTCTCACGGCGACAACACGCAGTCTCCTGGCCTCAGCCC ACACAGAGCTGACAGGCCTCGTTGCCCCCTCCCCCGTCCCATCGCCGCTG CGTATGTATGTGTATGTGTTTGCAGGCGCCGGTGAACTGGCGCACAGACT CCGCCACCGGCACGCAGCTCAAGCTGGAGCTCAGCAGCGGCCAGACGTGG CTGCTGTTCACCAGCGAGGAGGTCACGTACGAGTACAACAACATGCAGCT CGCCATGACGGCGCCGTTCACGGGCGTGCTGCGCGCGGCAGTGCTGCTGC ATCCAAAGGTACGCAGTGCTCAGCGTCAGCGCCGACGCCGGCCATGACGA CGCCGATCTTGACTTATACTTGTACTTGACTATATACTTCTGTGGAACTA TATCTGGCGATGGCGTCGGGAGGCATTCAATGGCGTGCTGCGTGCGGCGG TGCTGCTGCACCCAAAGGTAAACACACTTCCGCATCATGGCCGTCTCATT TGACCTCGCTGCTTTCTGTTGACGCGCTGCCCAGGATGAGGCGCTGCTCG CGCTTCAGGGCATACATGCCTCGGGCAACCGCTGAGCATCACCCTGCAGC ATCACCATGACCAACACTACAAACATCCTTCTGCGCCATTGCCCTCTCAT TTCACCCTGCCGCTGCCGCGTTGATGGCACCAGGACGAGGCGCTGCTCGC ACAGTACGCGCACGTGTACCCCACCGGCGGCGACGTGGCGTGGAGCGTTG AGGACGACACCATGCTCTTGAGGTTGGTGATTGAAGTTCTTCTAGTGTAC TGCTTCTAGTGTAATGATCGAAGTGAACGCGTCATGCAGCTGGCGCATGT GAACAGCATCGCCGTGTCACGCAGTTGGCGTGAGTGAGTCAGAGCGTTGA GGTTGACACCAGGCACTTGAGGTGAGTAAATGAAGTACTTCTAGCGTACA TGTTGAAGTGACAATGTCATGCAGTTGGCGTGAGTCGACAGCATCGTAAT GTCGTGCACTCGGCGCGCGCGACCTTGACGTGAAGATAGCATGACACTGT GCATGCACTTGATGTGAGTAAAAAGCATCACAATGTCATGCACTCGGCGC CAGCAATTAGCATCATATCACAAGTACAACTGCATTGCGGCCTTGTGCAC ACATGTACTGCTGATTTAGAGGGCTGCTTGTATCAGCTGGGGGGCTTTAT TGATCTTACACAAAAGGGGACAGCTTTACGGCAACGGCTGGGGATAGTGT TAGGCTCATTGTGCGCACATGCACCGCTGGCTTGATGAGTTGTTGGATTA AGTTGGTATCACCGGCGTGGTCGTTTCACAGAAGATATGGTTCACAAAGG GTTGGGAGCTCAAACGAATGGCTGGTAGACAATTCTGCTGCCTCGAGCTG AAGTGTCACCAGTTGAAGTTCATTCCACGTCAGGCGCGTCACGGCGCGCA AACGGACGCTGCGATGACCATCGCGACGCCTGGCACTGCGAGCATTGTGC CACGATCACACTCTCAGCGGCGGTAACAGACAGAGGCGCTGCTTCATATC GTCGTGCCGACGTGCTCACCACGGACGTAGCGCAACTATTGGCACGCCGA GCACACTGCTTGTGCTGTACCACGACTGTGCTGGATGTGTGCACGGCTCC TCCATACTGCGTAGATGCCTCGTTTATACGGTGCCTTGCACAGAAGCGGG GGGGGCTGGGGCGCACGGCGATTCTTGCTCGTGAGGGCGCCCAGCGGCAG GCTGTTCCTCCGCTGGGTACAGATCCAGGGGGGCTACCGCGCTCCTTCAT ACTGCGTAGATGCCTCCTTCATCTCGTGTCTGGCGCGGAAAGGGGGGCGG GTGGGGGAAATGGGACCCGCTCAACCGCATTAAAGACGGCAAGCCCCAGG CCGGCCTCTACGGCGCAGACAGCTGCCGGAAAGGGGGCTCTACGGCGGTG GCGGAGCATCTCAAGGAGCGCCTCGGCCTGACGTGGTCCCCCCCGAGCTG A
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Coding sequence (CDS) from alignment at Contig_17:852779..856079-

>mRNA_3426 ID=mRNA_3426|Name=jgi.p|Trimin1|347951|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=912bp|location=Sequence derived from alignment at Contig_17:852779..856079- (Tribonema minus UTEX_B_3156 )
ATGGCGCAGGCGAACTTCAACACGGCGCAGCACCCCATGTCGCCCGACGC
GGCCCTCTGGGGCAACGTCCAGCGCCCGTACCCCACGGGCGCCTGGTGGC
TCAACTTTGCGCTGCCGGGCGAGCCGCAGCCCGCCGTCGCGTACCCCTAC
GCCGTCAAGGCGCGCCCCGAGGGGCCACTCGTCAGCTACAGCGCGACCCG
GCGCCTCGTGGAGCAGAAGATCTTTGCGGACATCTTCGCACCCGACCTGA
GCGTCACCACGGCGAGCCCCGCCGTCGCGCACTACGTCGACGCCTTCGAC
CAGCTCAGCGTGACCGAGACGTATGAGACGGAGGACGGGGGGTCGTACAA
GCTGCTCTTTGTCAAGGGGTCCCCTTACGTGACGTTTGAGTTCACCAACT
GCCAGGTGCAGCTCAAGCCGCTGGCGCTGTTCAGCGCCGTCAACGGCGAG
GCGCCGGTGAACTGGCGCACAGACTCCGCCACCGGCACGCAGCTCAAGCT
GGAGCTCAGCAGCGGCCAGACGTGGCTGCTGTTCACCAGCGAGGAGGTCA
CGTACGAGTACAACAACATGCAGCTCGCCATGACGGCGCCGTTCACGGGC
GTGCTGCGCGCGGCAGTGCTGCTGCATCCAAAGGACGAGGCGCTGCTCGC
ACAGTACGCGCACGTGTACCCCACCGGCGGCGACGTGGCGTGGAGCGTTG
AGGACGACACCATGCTCTTGAGGGCGCCCAGCGGCAGGCTGTTCCTCCGC
TGGGGGGGCGGGTGGGGGAAATGGGACCCGCTCAACCGCATTAAAGACGG
CAAGCCCCAGGCCGGCCTCTACGGCGCAGACAGCTGCCGGAAAGGGGGCT
CTACGGCGGTGGCGGAGCATCTCAAGGAGCGCCTCGGCCTGACGTGGTCC
CCCCCGAGCTGA
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