mRNA_15715 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353519
Unique NamemRNA_15715
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353519 vs. uniprot
Match: A0A835Z6G2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G2_9STRA)

HSP 1 Score: 566 bits (1460), Expect = 6.870e-203
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 1 
Query:    1 MKPPAPRTSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAESDTRPADADRRAPAAIALDMGHSRRPSGPSAAVPHFAAPGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGIDDMEDQGEYNSSPPVSSQYVAEPEPVDPDNDFSSLANAWPSSFKEHNNAGAAIYTIPLSYEALPPDPLPPLHTDFDRYGISPSLHKALLASGTPALLDDSDEDMGVDYYSAPVARRRLRRLAAYSSSXXXXXXXXXXXXXXXXXXXXEGFDAGIASPAAVYGAAAAATASLLSL 963
            MKPPAPRTSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAESDTRPADADRRAPAAIALDMGHSRRPSGPSAAVPHFAAPGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGIDDMEDQGEYNSSPPVSSQYVAEPEPVDPDNDFSSLANAWPSSFKEHNNAGAAIYTIPLSYEALPPDPLPPLHTDFDRYGISPSLHKALLASGTPALLDDSDEDMGVDYYSAPVARRRLRRLAAYSSSXXXXXXXXXXXXXXXXXXXXEGFDAGIASPAAVYGAAAAATASLLSL
Sbjct:    1 MKPPAPRTSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAESDTRPADADRRAPAAIALDMGHSRRPSGPSAAVPHFAAPGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGIDDMEDQGEYNSSPPVSSQYVAEPEPVDPDNDFSSLANAWPSSFKEHNNAGAAIYTIPLSYEALPPDPLPPLHTDFDRYGISPSLHKALLASGTPALLDDSDEDMGVDYYSAPVARRRLRRLAAYSSSXXXXXXXXXXXXXXXXXXXXEGFDAGIASPAAVYGAAAAATASLLSL 321
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BLAST of jgi.p|Trimin1|353519 vs. uniprot
Match: A0A835YGC4_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.960e-19
Identity = 67/156 (42.95%), Postives = 84/156 (53.85%), Query Frame = 1 
Query:   22 TSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAE-------------SDTRPADADRRAPAAIALDMG-HSRRPSGPSAAVPHFAA--PGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGI 441
            T  +A+     K+ YKRPRKRA+EVDRK+TC HCFKGYGNASSLNLHV+LKH +       +A PA                +   D     P AI+++   H RRPSGP A VPH  +    +L R+ S G G R    +R R       GDGG+
Sbjct:   29 TGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEF------AAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDRGLHSGGGGDGGV 178
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BLAST of jgi.p|Trimin1|353519 vs. uniprot
Match: A0A835Z944_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z944_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.140e-13
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   37 ASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKH 177
            AS S  K++YKRPRKRAHEVDRK+TC HC +GYGNASSL+LHVRLKH
Sbjct:  173 ASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKH 219
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353519 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z6G2_9STRA6.870e-203100.00C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YGC4_9STRA2.960e-1942.95C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z944_9STRA6.140e-1378.72C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_168contigContig_168:79801..81574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353519|estExt_Genemark1.C_Ctg_1680014
Hectar predicted targeting categoryother localisation
TranscriptId353841
TrackFilteredModels1
ProteinId353519
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353519gene_15715Tribonema minus UTEX_B_3156 geneContig_168 79801..81574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353519Trimin1|353519|estExt_Genemark1.C_Ctg_1680014Tribonema minus UTEX_B_3156 polypeptideContig_168 79801..81574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15715_3exon_15715_3Tribonema minus UTEX_B_3156 exonContig_168 79801..80227 -
exon_15715_2exon_15715_2Tribonema minus UTEX_B_3156 exonContig_168 80821..81279 -
exon_15715_1exon_15715_1Tribonema minus UTEX_B_3156 exonContig_168 81495..81574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15715CDS_15715Tribonema minus UTEX_B_3156 CDSContig_168 81495..81574 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15715 ID=mRNA_15715|Name=jgi.p|Trimin1|353519|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=966bp|location=Sequence derived from alignment at Contig_168:79801..81574- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTCCGGCGCCTAGGACCTCAGCGCTCGCAGCATCGAGCTCCCG
CATGAAGCAGCAGTACAAGCGCCCGAGGAAGCGCGCCCACGAAGTCGACA
GGAAGCACACGTGCCAGCACTGCTTCAAGGGGTACGGCAACGCCTCCTCC
CTGAATCTGCACGTTCGCCTCAAGCACTCCGACCAGCCGCAGCCCCAGCC
TTCCTCCGCCCTGCCCGCTGAAAGCGACACGCGGCCTGCCGACGCCGACC
GCCGCGCCCCAGCGGCAATCGCTCTGGACATGGGCCACAGCAGGAGGCCG
TCAGGGCCGAGCGCAGCTGTGCCCCACTTCGCTGCGCCCGGGTCGCTGCA
GAGGCAGCCCTCGGGGGGCACCGGGTTCCGGAGCCTGCTGAACAAGCGCA
AGCGCGATGGCGACCTGCTCGCATTCGGGGACGGCGGCATCGACGACATG
GAGGACCAAGGCGAATATAACTCCAGCCCACCAGTGAGCAGTCAGTATGT
CGCGGAGCCAGAGCCGGTTGACCCTGACAATGACTTCAGCAGCCTCGCCA
ACGCCTGGCCCTCCAGCTTCAAGGAGCACAACAACGCCGGCGCCGCCATC
TACACCATCCCCCTGTCCTACGAGGCCCTCCCCCCCGACCCCCTGCCCCC
CCTCCACACCGACTTTGACCGCTACGGCATCTCCCCCAGCCTGCACAAGG
CGCTGCTCGCGAGCGGCACGCCCGCGCTGCTCGACGACTCCGACGAGGAC
ATGGGCGTCGACTACTACTCCGCACCCGTCGCGCGCCGCCGCCTGCGCCG
CCTCGCCGCCTACAGCAGCAGCCTCGCCAGCAGCGGCAGCAGCGGCGGCA
GCGGCAGCAGCGGCGGCAGCGGCGGTAGCGCCGAGGGTTTCGATGCCGGC
ATTGCGTCGCCCGCCGCCGTGTACGGCGCGGCGGCGGCGGCGACGGCATC
GCTGCTGTCCTTGTAA
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protein sequence of jgi.p|Trimin1|353519

>Trimin1|353519|estExt_Genemark1.C_Ctg_1680014 ID=Trimin1|353519|estExt_Genemark1.C_Ctg_1680014|Name=jgi.p|Trimin1|353519|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=322bp
MKPPAPRTSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASS
LNLHVRLKHSDQPQPQPSSALPAESDTRPADADRRAPAAIALDMGHSRRP
SGPSAAVPHFAAPGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGIDDM
EDQGEYNSSPPVSSQYVAEPEPVDPDNDFSSLANAWPSSFKEHNNAGAAI
YTIPLSYEALPPDPLPPLHTDFDRYGISPSLHKALLASGTPALLDDSDED
MGVDYYSAPVARRRLRRLAAYSSSLASSGSSGGSGSSGGSGGSAEGFDAG
IASPAAVYGAAAAATASLLSL*
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mRNA from alignment at Contig_168:79801..81574-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15715 ID=mRNA_15715|Name=jgi.p|Trimin1|353519|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1774bp|location=Sequence derived from alignment at Contig_168:79801..81574- (Tribonema minus UTEX_B_3156 )
ATGAAGCCTCCGGCGCCTAGGACCTCAGCGCTCGCAGCATCGAGCTCCCG
CATGAAGCAGCAGTACAAGCGCCCGAGGAAGTGAGTGCAGCTCGCTAGAT
CATAGATGCCACTTTTCCCTTCACCAACAGCGTGGGTGCAGCATGCCAAC
TGAGTCTCGCATGGCGCTCTGCGGCGCGCCGTCCAATTGAACCTTTGGCT
ACTGATTGCGTGATGCCGGGGCGCGTTGCGCGGTAGCACCGCCAGCTTCA
CTCAGCGCTGCGCTGCTTGCCCTGCCACCTGCTCCATCTCCTCAGGCGCG
CCCACGAAGTCGACAGGAAGCACACGTGCCAGCACTGCTTCAAGGGGTAC
GGCAACGCCTCCTCCCTGAATCTGCACGTTCGCCTCAAGCACTCCGACCA
GCCGCAGCCCCAGCCTTCCTCCGCCCTGCCCGCTGAAAGCGACACGCGGC
CTGCCGACGCCGACCGCCGCGCCCCAGCGGCAATCGCTCTGGACATGGGC
CACAGCAGGAGGCCGTCAGGGCCGAGCGCAGCTGTGCCCCACTTCGCTGC
GCCCGGGTCGCTGCAGAGGCAGCCCTCGGGGGGCACCGGGTTCCGGAGCC
TGCTGAACAAGCGCAAGCGCGATGGCGACCTGCTCGCATTCGGGGACGGC
GGCATCGACGACATGGAGGACCAAGGCGAATATAACTCCAGCCCACCAGT
GAGCAGTCAGTATGTCGCGGAGCCAGAGCCGGTTGACCCTGACAATGACT
TCAGGTAATGCCCACGCAGGGAACTCGAGTTCGAGGAAGTTCACGCTTTT
TGATCATGCATATTGTCACTTTGCTGGCGCGCCGGGGCCCCAGTCTGTTG
CAGCGCGCCAGAGTAATGCGCAAAGTTGGCAATTTAACAGGGCAACGGTT
CCTGAGGGTATGTATGTGCACACACACACACCCCGCCCTTGTGTGCGCGA
CGCAGGCACTCACACTGAGCACCGGCTGCCTCGGTGGCCACCAAGTGCGG
CCACGCAGACCGATCGCTGCAGTTGTGATTTCGCTGCGTACCATGCACGC
TGAGTGCTGCTACTGTTTCAGATCACTCATCTTGAACTTCATTCACGATA
TCGCACTCACGCGGGCTACTTCAACATCAGTCGCTCCGGCACTGAGCAGC
GCCAGTGCACGCCCGGCTGGCGCTGCAAGCAGAGCTGTTGAATGCCCCGT
CTCTAACATGCTCATACCTCAACGTGGAGGTCTCGCGAGTAGCTACACAC
TGCCACTACACCTCGAGAGCTTCATATTGAACACGAATTAGTGCTCAAGC
CCCCCCCCCTTTGCCCCTTCCCCCCACCCCCCCCCCGCGCCCCCGAGCAG
CCTCGCCAACGCCTGGCCCTCCAGCTTCAAGGAGCACAACAACGCCGGCG
CCGCCATCTACACCATCCCCCTGTCCTACGAGGCCCTCCCCCCCGACCCC
CTGCCCCCCCTCCACACCGACTTTGACCGCTACGGCATCTCCCCCAGCCT
GCACAAGGCGCTGCTCGCGAGCGGCACGCCCGCGCTGCTCGACGACTCCG
ACGAGGACATGGGCGTCGACTACTACTCCGCACCCGTCGCGCGCCGCCGC
CTGCGCCGCCTCGCCGCCTACAGCAGCAGCCTCGCCAGCAGCGGCAGCAG
CGGCGGCAGCGGCAGCAGCGGCGGCAGCGGCGGTAGCGCCGAGGGTTTCG
ATGCCGGCATTGCGTCGCCCGCCGCCGTGTACGGCGCGGCGGCGGCGGCG
ACGGCATCGCTGCTGTCCTTGTAA
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Coding sequence (CDS) from alignment at Contig_168:79801..81574-

>mRNA_15715 ID=mRNA_15715|Name=jgi.p|Trimin1|353519|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=966bp|location=Sequence derived from alignment at Contig_168:79801..81574- (Tribonema minus UTEX_B_3156 )
ATGAAGCCTCCGGCGCCTAGGACCTCAGCGCTCGCAGCATCGAGCTCCCG
CATGAAGCAGCAGTACAAGCGCCCGAGGAAGCGCGCCCACGAAGTCGACA
GGAAGCACACGTGCCAGCACTGCTTCAAGGGGTACGGCAACGCCTCCTCC
CTGAATCTGCACGTTCGCCTCAAGCACTCCGACCAGCCGCAGCCCCAGCC
TTCCTCCGCCCTGCCCGCTGAAAGCGACACGCGGCCTGCCGACGCCGACC
GCCGCGCCCCAGCGGCAATCGCTCTGGACATGGGCCACAGCAGGAGGCCG
TCAGGGCCGAGCGCAGCTGTGCCCCACTTCGCTGCGCCCGGGTCGCTGCA
GAGGCAGCCCTCGGGGGGCACCGGGTTCCGGAGCCTGCTGAACAAGCGCA
AGCGCGATGGCGACCTGCTCGCATTCGGGGACGGCGGCATCGACGACATG
GAGGACCAAGGCGAATATAACTCCAGCCCACCAGTGAGCAGTCAGTATGT
CGCGGAGCCAGAGCCGGTTGACCCTGACAATGACTTCAGCAGCCTCGCCA
ACGCCTGGCCCTCCAGCTTCAAGGAGCACAACAACGCCGGCGCCGCCATC
TACACCATCCCCCTGTCCTACGAGGCCCTCCCCCCCGACCCCCTGCCCCC
CCTCCACACCGACTTTGACCGCTACGGCATCTCCCCCAGCCTGCACAAGG
CGCTGCTCGCGAGCGGCACGCCCGCGCTGCTCGACGACTCCGACGAGGAC
ATGGGCGTCGACTACTACTCCGCACCCGTCGCGCGCCGCCGCCTGCGCCG
CCTCGCCGCCTACAGCAGCAGCCTCGCCAGCAGCGGCAGCAGCGGCGGCA
GCGGCAGCAGCGGCGGCAGCGGCGGTAGCGCCGAGGGTTTCGATGCCGGC
ATTGCGTCGCCCGCCGCCGTGTACGGCGCGGCGGCGGCGGCGACGGCATC
GCTGCTGTCCTTGTAA
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