Trimin1|353519|estExt_Genemark1.C_Ctg_1680014 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353519
Unique NameTrimin1|353519|estExt_Genemark1.C_Ctg_1680014
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length322
Homology
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BLAST of jgi.p|Trimin1|353519 vs. uniprot
Match: A0A835Z6G2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G2_9STRA)

HSP 1 Score: 566 bits (1460), Expect = 6.870e-203
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0 
Query:    1 MKPPAPRTSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAESDTRPADADRRAPAAIALDMGHSRRPSGPSAAVPHFAAPGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGIDDMEDQGEYNSSPPVSSQYVAEPEPVDPDNDFSSLANAWPSSFKEHNNAGAAIYTIPLSYEALPPDPLPPLHTDFDRYGISPSLHKALLASGTPALLDDSDEDMGVDYYSAPVARRRLRRLAAYSSSXXXXXXXXXXXXXXXXXXXXEGFDAGIASPAAVYGAAAAATASLLSL 321
            MKPPAPRTSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAESDTRPADADRRAPAAIALDMGHSRRPSGPSAAVPHFAAPGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGIDDMEDQGEYNSSPPVSSQYVAEPEPVDPDNDFSSLANAWPSSFKEHNNAGAAIYTIPLSYEALPPDPLPPLHTDFDRYGISPSLHKALLASGTPALLDDSDEDMGVDYYSAPVARRRLRRLAAYSSSXXXXXXXXXXXXXXXXXXXXEGFDAGIASPAAVYGAAAAATASLLSL
Sbjct:    1 MKPPAPRTSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAESDTRPADADRRAPAAIALDMGHSRRPSGPSAAVPHFAAPGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGIDDMEDQGEYNSSPPVSSQYVAEPEPVDPDNDFSSLANAWPSSFKEHNNAGAAIYTIPLSYEALPPDPLPPLHTDFDRYGISPSLHKALLASGTPALLDDSDEDMGVDYYSAPVARRRLRRLAAYSSSXXXXXXXXXXXXXXXXXXXXEGFDAGIASPAAVYGAAAAATASLLSL 321
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BLAST of jgi.p|Trimin1|353519 vs. uniprot
Match: A0A835YGC4_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.960e-19
Identity = 67/156 (42.95%), Postives = 84/156 (53.85%), Query Frame = 0 
Query:    8 TSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKHSDQPXXXXSSALPAE-------------SDTRPADADRRAPAAIALDMG-HSRRPSGPSAAVPHFAA--PGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGI 147
            T  +A+     K+ YKRPRKRA+EVDRK+TC HCFKGYGNASSLNLHV+LKH +       +A PA                +   D     P AI+++   H RRPSGP A VPH  +    +L R+ S G G R    +R R       GDGG+
Sbjct:   29 TGKVASRVPLRKKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEF------AAAPAXXXXXXXXXXXXXXGSSSAQDCGHLVPLAISVNFNQHVRRPSGPGAVVPHVDSLRRAALTRRASAGNGIRGAFARRDRGLHSGGGGDGGV 178
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BLAST of jgi.p|Trimin1|353519 vs. uniprot
Match: A0A835Z944_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z944_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.140e-13
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0 
Query:   13 ASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKH 59
            AS S  K++YKRPRKRAHEVDRK+TC HC +GYGNASSL+LHVRLKH
Sbjct:  173 ASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKH 219
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353519 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z6G2_9STRA6.870e-203100.00C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YGC4_9STRA2.960e-1942.95C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z944_9STRA6.140e-1378.72C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 11..73
e-value: 2.6E-5
score: 25.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..73
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 38..59
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 36..64
score: 9.847349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_168contigContig_168:79801..81574 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353519mRNA_15715Tribonema minus UTEX_B_3156 mRNAContig_168 79801..81574 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353519|estExt_Genemark1.C_Ctg_1680014 ID=Trimin1|353519|estExt_Genemark1.C_Ctg_1680014|Name=jgi.p|Trimin1|353519|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=322bp
MKPPAPRTSALAASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASS
LNLHVRLKHSDQPQPQPSSALPAESDTRPADADRRAPAAIALDMGHSRRP
SGPSAAVPHFAAPGSLQRQPSGGTGFRSLLNKRKRDGDLLAFGDGGIDDM
EDQGEYNSSPPVSSQYVAEPEPVDPDNDFSSLANAWPSSFKEHNNAGAAI
YTIPLSYEALPPDPLPPLHTDFDRYGISPSLHKALLASGTPALLDDSDED
MGVDYYSAPVARRRLRRLAAYSSSLASSGSSGGSGSSGGSGGSAEGFDAG
IASPAAVYGAAAAATASLLSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type