mRNA_16964 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CJ97_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ97_9STRA) HSP 1 Score: 226 bits (575), Expect = 2.510e-73 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 Query: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD Sbjct: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA) HSP 1 Score: 138 bits (348), Expect = 7.080e-39 Identity = 90/156 (57.69%), Postives = 102/156 (65.38%), Query Frame = 1 Query: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTG-EQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHA 465 IKP ++SW LLDAIG+AGQ A+MMAWYG+M +G XXXXXXXXXXXXX I CYA AK P KAE+VLAEMVQSATIKPNAITF S+MKAY+ +RLD+AE VI RMRAAGV+P L W IIHA Sbjct: 3 IKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 158
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA) HSP 1 Score: 134 bits (336), Expect = 6.230e-37 Identity = 78/161 (48.45%), Postives = 80/161 (49.69%), Query Frame = 1 Query: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 IKP QSWNVLL+AIGRAGQ EMMAWYG+MCQTGEQP V I CYA AK P KAEEVLAEMVQSATIKPN SRMRAAGV P WKSIIHAAD L D Sbjct: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRD 161
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA) HSP 1 Score: 134 bits (337), Expect = 3.270e-35 Identity = 90/162 (55.56%), Postives = 103/162 (63.58%), Query Frame = 1 Query: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-INCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 IKP SW LLDAIG+AGQ AEMMAWYG+M +G XXXXXXXXXXXXXXX I+CYATA P +AE VLAEM QSA +KPNA F S+M+AYI +RLD+AE +I RMRAAGV+P W+ IIHAAD LGD Sbjct: 121 IKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHAADELGD 282
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CLV8_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV8_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.080e-33 Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1 Query: 250 CYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 CYATAK P KAEEVLAEMVQSATIKP AITFTS+MKAYI+++RLDDAE VISRMRAAGVQP++ WKSIIHAAD LGD Sbjct: 203 CYATAKQPDKAEEVLAEMVQSATIKPEAITFTSLMKAYIEMERLDDAERVISRMRAAGVQPTIETWKSIIHAADTLGD 280
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA) HSP 1 Score: 125 bits (314), Expect = 6.890e-33 Identity = 74/161 (45.96%), Postives = 88/161 (54.66%), Query Frame = 1 Query: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 IKP+ +W LL+ IG AG +M+A Y +MC G +P V INCYAT KDP KAEEVLAEM+QSA I +AI+F S+MKAY RL++AE VI RMRAAGVQP+ WK IIHAADAL D Sbjct: 47 IKPSAPTWGALLNTIGTAGHVEKMLAKYKEMCTIGPRPTVITMTTLLDHAGAGEVDIFNDLWREMHYRQLVPDVKSYNTR-INCYATVKDPGKAEEVLAEMIQSAAITLDAISFNSLMKAYYCSGRLNEAELVIDRMRAAGVQPTADIWKGIIHAADALDD 206
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.350e-31 Identity = 79/188 (42.02%), Postives = 94/188 (50.00%), Query Frame = 1 Query: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGE-QPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFT--------------------------SVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 I+P +QSW LL AIGRAGQ AEMMA Y +MC TG QP++ I CYATAK P K E VLAE ++SA +KP+AI FT S+M+AYI +RLD+AE VI RMRAAGV+P L W+SIIHA D LGD Sbjct: 121 IRPDLQSWGALLHAIGRAGQLAEMMACYREMCATGGVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMFTRACADFRTVLSTMRPALLLVRPPCMVSLMQAYINNKRLDEAERVIGRMRAAGVEPILGTWRSIIHAGDELGD 308
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.550e-31 Identity = 77/175 (44.00%), Postives = 93/175 (53.14%), Query Frame = 1 Query: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGE-QPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTS-------------VMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 IK V+SWNVLL+AIGRAGQ EMMAWY +M ++G QPD I CYATA+ P KAE+V+AEM QSA +KP+AI TS +M+AYI +RLDDA+ VI RMRAAG P W +II AADA+GD Sbjct: 228 IKLDVRSWNVLLNAIGRAGQVTEMMAWYREMLKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNMLMDVCYNLMQAYINDERLDDADRVIGRMRAAGADPISGTWTTIICAADAVGD 402
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CIT2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT2_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.250e-29 Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1 Query: 250 CYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 CYA AKDP KAE+VLA+M++SA ++PNAITF SVMKAYI+VQRLDDAE VISRMRA GVQP L W SIIHAA ALGD Sbjct: 204 CYAMAKDPGKAEKVLADMIKSAAVEPNAITFNSVMKAYIEVQRLDDAEDVISRMRATGVQPDLEIWTSIIHAAGALGD 281
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.530e-29 Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 1 Query: 244 INCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483 IN YAT K+P KAE V AEM Q+A +KPNA TFTS+MKAYI+VQRLD AE VISRMR+AGVQPSLP WKSIIHAAD GD Sbjct: 589 INFYATTKEPEKAEAVFAEMCQAANVKPNAFTFTSLMKAYIEVQRLDAAEQVISRMRSAGVQPSLPTWKSIIHAADTAGD 668 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16964 ID=mRNA_16964|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_167:292561..294240- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCAAACCGACTGTACAGAGCTGGAATGTGCTCTTGGATGCCATTGGCAGback to top protein sequence of jgi.p|Trimin1|135764 >Trimin1|135764|gw1.167.28.1 ID=Trimin1|135764|gw1.167.28.1|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVYTMTILLDHVback to top mRNA from alignment at Contig_167:292561..294240- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16964 ID=mRNA_16964|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1680bp|location=Sequence derived from alignment at Contig_167:292561..294240- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_167:292561..294240- >mRNA_16964 ID=mRNA_16964|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_167:292561..294240- (Tribonema minus UTEX_B_3156 )back to top |