mRNA_16964 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135764
Unique NamemRNA_16964
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CJ97_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ97_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.510e-73
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD
Sbjct:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.080e-39
Identity = 90/156 (57.69%), Postives = 102/156 (65.38%), Query Frame = 1
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTG-EQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHA 465
            IKP ++SW  LLDAIG+AGQ A+MMAWYG+M  +G      XXXXXXXXXXXXX                            I CYA AK P KAE+VLAEMVQSATIKPNAITF S+MKAY+  +RLD+AE VI RMRAAGV+P L  W  IIHA
Sbjct:    3 IKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 158          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.230e-37
Identity = 78/161 (48.45%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            IKP  QSWNVLL+AIGRAGQ  EMMAWYG+MCQTGEQP V                                         I CYA AK P KAEEVLAEMVQSATIKPN                        SRMRAAGV P    WKSIIHAAD L D
Sbjct:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRD 161          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.270e-35
Identity = 90/162 (55.56%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-INCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            IKP   SW  LLDAIG+AGQ AEMMAWYG+M  +G     XXXXXXXXXXXXXXX                           I+CYATA  P +AE VLAEM QSA +KPNA  F S+M+AYI  +RLD+AE +I RMRAAGV+P    W+ IIHAAD LGD
Sbjct:  121 IKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHAADELGD 282          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CLV8_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.080e-33
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1
Query:  250 CYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            CYATAK P KAEEVLAEMVQSATIKP AITFTS+MKAYI+++RLDDAE VISRMRAAGVQP++  WKSIIHAAD LGD
Sbjct:  203 CYATAKQPDKAEEVLAEMVQSATIKPEAITFTSLMKAYIEMERLDDAERVISRMRAAGVQPTIETWKSIIHAADTLGD 280          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.890e-33
Identity = 74/161 (45.96%), Postives = 88/161 (54.66%), Query Frame = 1
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            IKP+  +W  LL+ IG AG   +M+A Y +MC  G +P V                                         INCYAT KDP KAEEVLAEM+QSA I  +AI+F S+MKAY    RL++AE VI RMRAAGVQP+   WK IIHAADAL D
Sbjct:   47 IKPSAPTWGALLNTIGTAGHVEKMLAKYKEMCTIGPRPTVITMTTLLDHAGAGEVDIFNDLWREMHYRQLVPDVKSYNTR-INCYATVKDPGKAEEVLAEMIQSAAITLDAISFNSLMKAYYCSGRLNEAELVIDRMRAAGVQPTADIWKGIIHAADALDD 206          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.350e-31
Identity = 79/188 (42.02%), Postives = 94/188 (50.00%), Query Frame = 1
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGE-QPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFT--------------------------SVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            I+P +QSW  LL AIGRAGQ AEMMA Y +MC TG  QP++                                         I CYATAK P K E VLAE ++SA +KP+AI FT                          S+M+AYI  +RLD+AE VI RMRAAGV+P L  W+SIIHA D LGD
Sbjct:  121 IRPDLQSWGALLHAIGRAGQLAEMMACYREMCATGGVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMFTRACADFRTVLSTMRPALLLVRPPCMVSLMQAYINNKRLDEAERVIGRMRAAGVEPILGTWRSIIHAGDELGD 308          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.550e-31
Identity = 77/175 (44.00%), Postives = 93/175 (53.14%), Query Frame = 1
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGE-QPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTS-------------VMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            IK  V+SWNVLL+AIGRAGQ  EMMAWY +M ++G  QPD                                          I CYATA+ P KAE+V+AEM QSA +KP+AI  TS             +M+AYI  +RLDDA+ VI RMRAAG  P    W +II AADA+GD
Sbjct:  228 IKLDVRSWNVLLNAIGRAGQVTEMMAWYREMLKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNMLMDVCYNLMQAYINDERLDDADRVIGRMRAAGADPISGTWTTIICAADAVGD 402          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CIT2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.250e-29
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:  250 CYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            CYA AKDP KAE+VLA+M++SA ++PNAITF SVMKAYI+VQRLDDAE VISRMRA GVQP L  W SIIHAA ALGD
Sbjct:  204 CYAMAKDPGKAEKVLADMIKSAAVEPNAITFNSVMKAYIEVQRLDDAEDVISRMRATGVQPDLEIWTSIIHAAGALGD 281          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.530e-29
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query:  244 INCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 483
            IN YAT K+P KAE V AEM Q+A +KPNA TFTS+MKAYI+VQRLD AE VISRMR+AGVQPSLP WKSIIHAAD  GD
Sbjct:  589 INFYATTKEPEKAEAVFAEMCQAANVKPNAFTFTSLMKAYIEVQRLDAAEQVISRMRSAGVQPSLPTWKSIIHAADTAGD 668          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ97_9STRA2.510e-73100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6J3_9STRA7.080e-3957.69Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z497_9STRA6.230e-3748.45Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z5Z3_9STRA3.270e-3555.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CLV8_9STRA2.080e-3383.33PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CDU9_9STRA6.890e-3345.96PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEM5_9STRA2.350e-3142.02PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEZ1_9STRA3.550e-3144.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CIT2_9STRA1.250e-2976.92PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CK07_9STRA1.530e-2976.25PPR_long domain-containing protein n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:292561..294240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135764|gw1.167.28.1
Hectar predicted targeting categoryother localisation
TranscriptId136086
TrackFilteredModels1
ProteinId135764
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135764gene_16964Tribonema minus UTEX_B_3156 geneContig_167 292561..294240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135764Trimin1|135764|gw1.167.28.1Tribonema minus UTEX_B_3156 polypeptideContig_167 292561..294240 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16964_2exon_16964_2Tribonema minus UTEX_B_3156 exonContig_167 292561..292696 -
exon_16964_1exon_16964_1Tribonema minus UTEX_B_3156 exonContig_167 293894..294240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16964CDS_16964Tribonema minus UTEX_B_3156 CDSContig_167 293894..294240 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16964 ID=mRNA_16964|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_167:292561..294240- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCAAACCGACTGTACAGAGCTGGAATGTGCTCTTGGATGCCATTGGCAG
AGCGGGCCAGGCGGCCGAAATGATGGCATGGTACGGGAAGATGTGCCAAA
CAGGAGAACAGCCAGATGTTTATACCATGACCATTCTGCTGGATCATGTT
GGGGCAGCGGGAGAGCTGAGCGTTGCTGAGGGCATCTGGAGAGCGATGCG
TAATCGCCAGCTGGAGCCTGATGTCTACTGCTACAATGCATTGATCAATT
GCTATGCAACAGCAAAAGACCCCAGAAAGGCGGAGGAAGTGCTTGCAGAG
ATGGTCCAGTCTGCCACCATCAAGCCGAATGCCATCACGTTTACGAGCGT
CATGAAGGCATACATTAAGGTCCAGCGCCTGGACGATGCAGAGCATGTCA
TTAGCAGGATGCGTGCTGCAGGGGTACAGCCAAGCCTTCCAGCATGGAAG
AGCATCATACATGCTGCAGACGCACTTGGAGAC
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protein sequence of jgi.p|Trimin1|135764

>Trimin1|135764|gw1.167.28.1 ID=Trimin1|135764|gw1.167.28.1|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp
IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVYTMTILLDHV
GAAGELSVAEGIWRAMRNRQLEPDVYCYNALINCYATAKDPRKAEEVLAE
MVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWK
SIIHAADALGD
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mRNA from alignment at Contig_167:292561..294240-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16964 ID=mRNA_16964|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1680bp|location=Sequence derived from alignment at Contig_167:292561..294240- (Tribonema minus UTEX_B_3156 )
ATCAAACCGACTGTACAGAGCTGGAATGTGCTCTTGGATGCCATTGGCAG AGCGGGCCAGGCGGCCGAAATGATGGCATGGTACGGGAAGATGTGCCAAA CAGGAGAACAGCCAGATGTTTATACCATGACCATTCTGCTGGATCATGTT GGGGCAGCGGGAGAGCTGAGCGTTGCTGAGGGCATCTGGAGAGCGATGCG TAATCGCCAGCTGGAGCCTGATGTCTACTGCTACAATGCATTGATCAATT GCTATGCAACAGCAAAAGACCCCAGAAAGGCGGAGGAAGTGCTTGCAGAG ATGGTCCAGTCTGCCACCATCAAGCCGAATGCCATCACGTTTACGAGGTA CGTACAATGTACACACAAATTTTGAAATCAAACGTTGCAAGTATGTGTTA CATTATGGGTATGTAGATCAGCAATTTCATCGATCGAGTGAGCAGAGAAT CCAACTTCATGGTGTGGCACAATGTGACAAACAGAATTATCAAGTACATT TCTTGGTGTAGTACGATAGAAGTACTATCATTATGGAGAATCATGAAGTA CATCTGTCATGAGGCTTGTGCGACAGGAGATGAATGTGTTAGACGAGGGT AATTGCTGAAACACACACAGTGCTCATCAGTACATTTCTTGGTGTAGTAC GATAGAAGTACTATCATTATGGAGAATCATGAAGTACATCTGTCATGAGG CTTGTGCGACAGGAGATGAATGTGTTAGACTAGGGTAATTGCTGAAACAC ACACAGTGCTCATCAGCAGCTGCAGCAGCGGCAGCCGCACCAGTGCTCGA ACCCATTAAATACTAGACAAAGTGCCGGCGGGTGTGAGCTGCTTGGGTGC TTGGCATTGCAAAGCGTCAGTGACCCGGCGCGCTCAGGCTGTGTATGCGG CTGCATCCGTGCTGCCAATGCTGTGATTTGCTCTACAGTTACTGTGGTGC GGAGTATGCAGTGCATGCACATTACCGTAGCATTGAGTATCTGCAGCTGC ACCGTCATGCTGTGACACTGCACCATTCATAAGTTGCATGGACCTTAATG ATCGACTGCACCTGCATCATATACTTCTACAAGACAAAGCCCGCCACAGT TTTGTAGCTGGAGCAAGTACAGAAGTTCATGCATCGCATGTGCACAAGTT TGCGCATCGCCATGAGCTGATTTCTAGTGAATATTTACAGCGTCATGGGA CAATCAAGTATGAATACATACCCTGTCAAGGGTGAACAGTTGCCTGGCTC CACTTGTGTCAAATTGAGTGCTGCACTGATTTATAGTATGTTTCATGTTC CGTCATTTTGCATCATGTTCTGTACATGTGCAATGCTAGCATGGAGTGCA CATAGGCTAATGCGTACATGAACCATAGCCTGATGTCTTGGCATCGTGAA GCAAGCGCAAGTACATCATGTAGGCAGCTGCCAATTGCTATGGGTTCCAG CTGCAGTAGCACACGTGTTGCAGAGCATTACAAATTTGCACACCATAAGC TCAACAGGTTCCTGATTGCTTTGCTGCTCCTCTCAAATGATCAGCGTCAT GAAGGCATACATTAAGGTCCAGCGCCTGGACGATGCAGAGCATGTCATTA GCAGGATGCGTGCTGCAGGGGTACAGCCAAGCCTTCCAGCATGGAAGAGC ATCATACATGCTGCAGACGCACTTGGAGAC
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Coding sequence (CDS) from alignment at Contig_167:292561..294240-

>mRNA_16964 ID=mRNA_16964|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_167:292561..294240- (Tribonema minus UTEX_B_3156 )
ATCAAACCGACTGTACAGAGCTGGAATGTGCTCTTGGATGCCATTGGCAG
AGCGGGCCAGGCGGCCGAAATGATGGCATGGTACGGGAAGATGTGCCAAA
CAGGAGAACAGCCAGATGTTTATACCATGACCATTCTGCTGGATCATGTT
GGGGCAGCGGGAGAGCTGAGCGTTGCTGAGGGCATCTGGAGAGCGATGCG
TAATCGCCAGCTGGAGCCTGATGTCTACTGCTACAATGCATTGATCAATT
GCTATGCAACAGCAAAAGACCCCAGAAAGGCGGAGGAAGTGCTTGCAGAG
ATGGTCCAGTCTGCCACCATCAAGCCGAATGCCATCACGTTTACGAGCGT
CATGAAGGCATACATTAAGGTCCAGCGCCTGGACGATGCAGAGCATGTCA
TTAGCAGGATGCGTGCTGCAGGGGTACAGCCAAGCCTTCCAGCATGGAAG
AGCATCATACATGCTGCAGACGCACTTGGAGAC
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