Trimin1|47524|CE47523_459 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|47524
Unique NameTrimin1|47524|CE47523_459
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length259
Homology
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A836CGG1_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG1_9STRA)

HSP 1 Score: 510 bits (1313), Expect = 1.360e-182
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRPTGPPPVAGACPPRPCRACPPPASPAQGALLGGQGGCRRQVCPPKACPLEAPLDFPPWACPPQGGGGTPLGRRCKGGGIGSARSVGRNRWGGWRLGRDCCARLCR 258
            MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRPTGPPPVAGACPPRPCRACPPPASPAQGALLGGQGGCRRQVCPPKACPLEAPLDFPPWACPPQGGGGTPLGRRCKGGGIGSARSVGRNRWGGWRLGRDCCARLCR
Sbjct:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRPTGPPPVAGACPPRPCRACPPPASPAQGALLGGQGGCRRQVCPPKACPLEAPLDFPPWACPPQGGGGTPLGRRCKGGGIGSARSVGRNRWGGWRLGRDCCARLCR 258          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: D7G689_ECTSI (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G689_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.710e-62
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHA--HEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVS 149
            M+M+RSSKML YVNYRMR+TI+D RVL+GT MAFDRH+N+VLGDCEE+R+ K KKG  A A  HEEREEKR LGLVL+RGENV SLTVEGPPP E+ G A PGGPGVGRAAGRG+P  P  GA P GLAGPVRG+GGPA+S+MQPQA + S
Sbjct:    1 MSMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAAAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKATPGGPGVGRAAGRGVPTMPVQGA-PRGLAGPVRGIGGPASSMMQPQAVAAS 150          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A4D9CW50_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW50_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.100e-59
Identity = 110/163 (67.48%), Postives = 128/163 (78.53%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAH----EEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRPTGPPP 159
            M+M++SSKML+Y+NYRMRVTI D+R L+GTFMAFDRHMN+VLGDCEE+RK+K+KKG G        EE+EEKR LGLVL+RGENVVSLTVEGPPPP+E   A PGGPG+GRAAGRG+ +      AP GLAGPVRGVGGPA S+M P A     GF P G PP
Sbjct:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPNAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAV----GFPPRGLPP 159          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A7S2HQ73_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ73_9STRA)

HSP 1 Score: 184 bits (468), Expect = 7.950e-55
Identity = 101/131 (77.10%), Postives = 114/131 (87.02%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVR 131
            MAMA+SSKML+++NYRMRVTI DSR L+GTFMAFD+HMN+VLGDCEE+RKIK+KKG G    EEREEKRTLGLVLVRGE VVS++VEGPPPP+  G   PGGPGVGRAAGRG+P AP  G APAGLAGPVR
Sbjct:    1 MAMAKSSKMLNFINYRMRVTIQDSRCLVGTFMAFDKHMNLVLGDCEEYRKIKAKKGVGVQ--EEREEKRTLGLVLVRGEMVVSMSVEGPPPPDNEGKEAPGGPGVGRAAGRGLPAAPL-GVAPAGLAGPVR 128          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A1Y1IDA8_KLENI (SnRNP n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDA8_KLENI)

HSP 1 Score: 183 bits (464), Expect = 2.630e-53
Identity = 103/157 (65.61%), Postives = 124/157 (78.98%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG---GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRP 154
            M+M++SSK+LH++NYRMRVT+ D R L+G FMAFD+HMN+VLGDCEE RK+  KKG+ A   E+REE+RTLGL+L+RGE VVSLTVEGPPP EE      A  GGPGVGRAAGRG+P AP   AAP GLAGPVRGVGGPAA++MQPQ   ++    P
Sbjct:    1 MSMSKSSKLLHHINYRMRVTLQDGRQLVGKFMAFDKHMNLVLGDCEEFRKLPQKKGKSA---EDREERRTLGLLLLRGEEVVSLTVEGPPPQEESRAKAMAASGGPGVGRAAGRGIPTAPLGQAAP-GLAGPVRGVGGPAAAMMQPQGRGIAAAAAP 153          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A6V3BNK5_HETAK (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BNK5_HETAK)

HSP 1 Score: 177 bits (449), Expect = 3.780e-52
Identity = 98/131 (74.81%), Postives = 111/131 (84.73%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVR 131
            M+M+RSSKML Y+NYRMRVT+ D R+L+GTFMAFDRHMN+ LGD EE+RK+K+KKGQG    E+REEKR LGLVLVRGENVVSL+VEGPPPPE+   A PGGPG GRAAGRG   APAAGA P GLAGPVR
Sbjct:    1 MSMSRSSKMLQYINYRMRVTLQDGRMLVGTFMAFDRHMNLCLGDTEEYRKLKNKKGQGVV--EDREEKRALGLVLVRGENVVSLSVEGPPPPEDDAKATPGGPGAGRAAGRGTVQAPAAGA-PVGLAGPVR 128          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: UPI001C4E8A0F (small nuclear ribonucleoprotein-associated proteins B and B'-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E8A0F)

HSP 1 Score: 179 bits (455), Expect = 5.560e-52
Identity = 102/149 (68.46%), Postives = 119/149 (79.87%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG-----GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQ 144
            M+M++SSKML Y+NYRMRVTI D R L+G FMAFDRHMN+VLGDCEE RK+   KG+    +EEREE+RTLGLVL+RGE VVS+TVEGPPPPEE      G A   GPG+GRAAGRG+P AP   A P GLAGPVRGVGGPA+++MQPQ
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---KNEEREERRTLGLVLLRGEEVVSMTVEGPPPPEESRAKAVGAAAMAGPGLGRAAGRGIPTAPLVQAQP-GLAGPVRGVGGPASNMMQPQ 145          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A822XXF9_NELNU (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XXF9_NELNU)

HSP 1 Score: 177 bits (448), Expect = 7.060e-52
Identity = 100/149 (67.11%), Postives = 117/149 (78.52%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG-----GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQ 144
            M+M++SSKML Y+NYRMRVTI D R L+G FMAFDRHMN+VLGDCEE RK+   KG+    +EERE++RTLGLVL+RGE VVS+TVEGPPPP+E      G A   GPG+GRAAGRG+P AP   A P GLAGPVRGVGGPA  +MQPQ
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---KNEEREDRRTLGLVLLRGEEVVSMTVEGPPPPDENRAKASGAAAMAGPGIGRAAGRGIPTAPLVQAQP-GLAGPVRGVGGPAPGMMQPQ 145          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A5J5B5C3_9ASTE (Small nuclear ribonucleoprotein-associated protein n=3 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5B5C3_9ASTE)

HSP 1 Score: 179 bits (453), Expect = 9.360e-52
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG-----GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQ 144
            M+M++SSKML Y+NYRMRVTI D R LIG FMAFDRHMN+VLGDCEE RK+   KG+    +EEREE+RTLGLVL+RGE V+S+TVEGPPPPEE      G A   GPG+GRAAGRG+P AP   A P GLAGPVRGVGGPA  +MQPQ
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---KNEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVGAAAMAGPGIGRAAGRGIPTAPLIQAQP-GLAGPVRGVGGPAPGMMQPQ 145          
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A5BRN5_VITVI (Small nuclear ribonucleoprotein-associated protein n=6 Tax=Pentapetalae TaxID=1437201 RepID=A5BRN5_VITVI)

HSP 1 Score: 178 bits (452), Expect = 1.360e-51
Identity = 101/149 (67.79%), Postives = 117/149 (78.52%), Query Frame = 0
Query:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG-----GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQ 144
            M+M++SSKML Y+NYRMRVTI D R L+G FMAFDRHMN+VLGDCEE RK+   KG+    +EEREE+RTLGLVL+RGE V+S+TVEGPPPPEE      G A   GPG+GRAAGRG+P AP   A P GLAGPVRGVGGPA  +MQPQ
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---KNEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVGAAAMAGPGIGRAAGRGIPTAPLIQAQP-GLAGPVRGVGGPAPGMMQPQ 145          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGG1_9STRA1.360e-182100.00Sm domain-containing protein n=1 Tax=Tribonema min... [more]
D7G689_ECTSI3.710e-6273.51Small nuclear ribonucleoprotein-associated protein... [more]
A0A4D9CW50_9STRA1.100e-5967.48Small nuclear ribonucleoprotein-associated protein... [more]
A0A7S2HQ73_9STRA7.950e-5577.10Small nuclear ribonucleoprotein-associated protein... [more]
A0A1Y1IDA8_KLENI2.630e-5365.61SnRNP n=1 Tax=Klebsormidium nitens TaxID=105231 Re... [more]
A0A6V3BNK5_HETAK3.780e-5274.81Small nuclear ribonucleoprotein-associated protein... [more]
UPI001C4E8A0F5.560e-5268.46small nuclear ribonucleoprotein-associated protein... [more]
A0A822XXF9_NELNU7.060e-5267.11Small nuclear ribonucleoprotein-associated protein... [more]
A0A5J5B5C3_9ASTE9.360e-5268.46Small nuclear ribonucleoprotein-associated protein... [more]
A5BRN5_VITVI1.360e-5167.79Small nuclear ribonucleoprotein-associated protein... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 7..86
e-value: 2.1E-22
score: 90.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..85
e-value: 8.4E-19
score: 67.0
NoneNo IPR availableGENE3D2.30.30.100coord: 5..93
e-value: 2.5E-31
score: 109.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..112
NoneNo IPR availablePANTHERPTHR10701:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B'coord: 1..217
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 1..217
NoneNo IPR availableCDDcd01717Sm_Bcoord: 5..86
e-value: 1.25265E-48
score: 153.476
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:423254..429267 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|47524mRNA_7505Tribonema minus UTEX_B_3156 mRNAContig_24 423094..429313 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|47524|CE47523_459 ID=Trimin1|47524|CE47523_459|Name=jgi.p|Trimin1|47524|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRK
IKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKP
GGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQ
GFRPTGPPPVAGACPPRPCRACPPPASPAQGALLGGQGGCRRQVCPPKAC
PLEAPLDFPPWACPPQGGGGTPLGRRCKGGGIGSARSVGRNRWGGWRLGR
DCCARLCR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf