Trimin1|180319|e_gw1.214.9.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|180319
Unique NameTrimin1|180319|e_gw1.214.9.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length322
Homology
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA)

HSP 1 Score: 417 bits (1071), Expect = 1.120e-143
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query:   72 APKADTAADGASAKKAPKAEEGVSTGAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRERWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCVCAGGV 321
            APKADTAADGASAKKAPKAEEGVSTGAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRERWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCVCAGGV
Sbjct:   72 APKADTAADGASAKKAPKAEEGVSTGAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRERWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCVCAGGV 321          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 2.450e-66
Identity = 115/204 (56.37%), Postives = 149/204 (73.04%), Query Frame = 0
Query:   85 KKAPKAEEGVSTGA---GTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRE-SFGGGG 276
            +KA  AEEG +  A    +KIY+RGLPW  ++++V+DFFK CG+I + + P + +GR+SGTA+V F  + AA K+ E        RWLKI+++ E+      G P  K KP GCTTVFIGNLSW +DED +R  FGECG+I SVRFA DRETG+F+GFGHVEF DGE VDAA+ +A +++ GRP+RVDYAAPRAPR+ SFGGGG
Sbjct:  264 RKADDAEEGDAKKAKSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELGGRWLKIMMSFEKPDHARNGEP--KVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 465          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.820e-60
Identity = 99/178 (55.62%), Postives = 126/178 (70.79%), Query Frame = 0
Query:   97 GAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPR 266
            GAG K+Y+RGLPW AT++E+R++F  CGEI SC+LP   +GR+SGTA + F+  DA  K           RWL I  A+++   P+F A +  +KP  C TVF GNLSW+VDED +R  F ECGEI+S+RFATDRETG+FKGFGH+EF   +  DAAI MAGT+I GR VRVDYAA +
Sbjct:  203 GAGKKMYIRGLPWRATDDELREYFASCGEIVSCELPLQSDGRSSGTAEIEFSTKDACEKCMALNGEDFGGRWLSIKYASDK---PAFAARETSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYAADK 377          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A7S3UY59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY59_HETAK)

HSP 1 Score: 205 bits (522), Expect = 1.920e-58
Identity = 100/186 (53.76%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   99 GTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 276
            G +I+V+GLPW+AT++EV++FFK+CG I  CD+P DHNGRASGTA+V F+  D  NK+ E        RWLKI  A ER A    G     ++PEGC TVF GNLSWD+DE+++R  F +CG+I+SVRFA DRETG F+GFG+V F DG   D A+ + G  +AGR +R+DY+APR   +  GGGG
Sbjct:  330 GFRIFVKGLPWAATDDEVKEFFKDCGTILDCDMPKDHNGRASGTAYVSFSTDDERNKAYELDGATFGERWLKIEEARERPAAAKPG-----ERPEGCDTVFCGNLSWDIDEESLREFFKDCGDISSVRFAEDRETGKFRGFGYVSFYDGACTDEAMKLTGQVVAGREIRLDYSAPR---DRSGGGG 507          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A448ZJJ1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJJ1_9STRA)

HSP 1 Score: 203 bits (516), Expect = 5.330e-58
Identity = 102/186 (54.84%), Postives = 129/186 (69.35%), Query Frame = 0
Query:  100 TKIYVRGLPWSATEEEVRDFFKECGE-IESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 276
            TK+Y+RGLPW ATE+ VRD+F +CG   +S +LP   +GR+SGTA + F D+D+A  + E        RWL I  +T +   P         K EGC TVF+GNL+W++DED++RAAF ECGEI  +RF+TDRETGDFKG+GH+EF   E  DAAI MAGT+I GR VRVDYA  R  R+SFGGGG
Sbjct:  243 TKLYIRGLPWRATEDAVRDYFAKCGSGPKSVELPLQDDGRSSGTAIIDFHDADSAAAAMELNGADFEGRWLSIKYSTPK---PILAPRQTTPKQEGCCTVFVGNLAWEIDEDSLRAAFAECGEITQIRFSTDRETGDFKGYGHIEFAQTESTDAAIKMAGTDIFGRAVRVDYANDR--RQSFGGGG 423          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A1Z5KL43_FISSO (Nucleolin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL43_FISSO)

HSP 1 Score: 202 bits (514), Expect = 2.190e-57
Identity = 98/173 (56.65%), Postives = 120/173 (69.36%), Query Frame = 0
Query:   99 GTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYA 263
            G K+YVRGLPW A E EV++FF  CG I+SC++P   +GR+SGTA + F  ++ A  + E        RWL I  +T +   P   A +   K +GC TVF+GNL+WDVDED +R AFGECGEI SVRFATDRETG+FKGFGH+EF D E  D AI MAGT+I GR VRVDYA
Sbjct:  274 GNKVYVRGLPWKAEEHEVQEFFAACGPIKSCEMPLMDDGRSSGTAIIEFETNEGAAAAIELNGGDFQGRWLSIKYSTPK---PILSAREPTQKQDGCVTVFVGNLAWDVDEDTLRQAFGECGEITSVRFATDRETGEFKGFGHIEFTDTEATDKAIAMAGTDILGRQVRVDYA 443          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.340e-56
Identity = 96/184 (52.17%), Postives = 129/184 (70.11%), Query Frame = 0
Query:  101 KIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 276
            K++++GLPW   E +++DFFK  G IES D P + +GRASGTA+VVF  +++A K+ E        RW+K++LA +    P  G     +KPEGC TVFIGNLSWD+DED VR  FG+CG+I SVRFA DRETG F+GFG+V+F DG+  D A+ + G+++ GR VR+DY+APR     FGGGG
Sbjct:  312 KVFMKGLPWETEEYQIKDFFKGIGTIESIDQPLNKDGRASGTAYVVFDSTESAEKALELDGGTVGERWVKLILARDIPPPPKPG-----EKPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPRG----FGGGG 486          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: W7TQX9_9STRA (RNA binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.440e-56
Identity = 99/191 (51.83%), Postives = 130/191 (68.06%), Query Frame = 0
Query:  101 KIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKS----------RERWLKIVLATERAARPSFG-----APDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRES-FGGG 275
            K++V+GLPWSATEEEVR FF++CG + S +LP   +GR+SGTA++VF + D   K+            RW+++      AA    G     A    +KPEGC +VFIGNLSW++DE+ +R+AF  CGE+ SVRFATDRETG+F+GFGHV+F D    +AA+ MAGT + GR +RVDYA PR PRE  FGGG
Sbjct:  276 KVFVQGLPWSATEEEVRAFFQKCGPMTSVELPL-KDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGG 465          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A6V0BCC8_9STRA (Hypothetical protein n=3 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BCC8_9STRA)

HSP 1 Score: 191 bits (485), Expect = 6.160e-55
Identity = 96/186 (51.61%), Postives = 128/186 (68.82%), Query Frame = 0
Query:  100 TKIYVRGLPWSATEEEVRDFFKECGE-IESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 276
            TK+Y+RGLPW ATEE V++FF +CG   ++ +LP   +GR+SGTA V F D+D+A  + E        RWL I  ++ +   P     +   K EGC TVF+GNLSWD+DED++RAAF ECG I+ +RF+TDRETGDFKG+GH+EF + +  D A+ MAGT+I GR VRVD+A  R  R+S GG G
Sbjct:   90 TKVYIRGLPWRATEEGVQEFFAKCGSGPKTVELPLQDDGRSSGTAIVDFHDADSAAAALELNGADFEGRWLSIKYSSPK---PILAPRETTQKQEGCCTVFVGNLSWDIDEDSLRAAFAECGTISQIRFSTDRETGDFKGYGHIEFTETDATDLAVKMAGTDILGRAVRVDFANDR--RQSSGGFG 270          
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA)

HSP 1 Score: 190 bits (483), Expect = 4.820e-54
Identity = 94/178 (52.81%), Postives = 124/178 (69.66%), Query Frame = 0
Query:   97 GAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPR 266
            GA +KI++RGLPW A+E+E+R+ F  CGEI+  + P + +GR+SGTA +VF  + +A  + E        RWL I LA ++  +    AP +K  PEGC T+FIGNLSW +DED+VR AF ECGEI +VRFA D+ETGDF+GFGHVEF + +    A+ MAGT+I GR VRVDYA  R
Sbjct:  201 GAKSKIFIRGLPWRASEDEIREHFGGCGEIKEVEQPMNSDGRSSGTALIVFGSASSAESAVEMNGGDFGGRWLDIKLADDKPIQTER-APSEK--PEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYAQDR 375          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAT4_9STRA1.120e-143100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LF99_ECTSI2.450e-6656.37Protein for assembly of pre-ribosomal particles co... [more]
A0A7S3Q248_9STRA1.820e-6055.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3UY59_HETAK1.920e-5853.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A448ZJJ1_9STRA5.330e-5854.84Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5KL43_FISSO2.190e-5756.65Nucleolin n=2 Tax=Fistulifera solaris TaxID=151956... [more]
A0A7S2V571_9STRA1.340e-5652.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TQX9_9STRA2.440e-5651.83RNA binding protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A6V0BCC8_9STRA6.160e-5551.61Hypothetical protein n=3 Tax=Pseudo-nitzschia aust... [more]
A0A7S2RIH6_9STRA4.820e-5452.81Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 47..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..58
NoneNo IPR availablePANTHERPTHR48024GEO13361P1-RELATEDcoord: 14..313
NoneNo IPR availablePANTHERPTHR48024:SF11NUCLEAR LOCALIZATION SEQUENCE-BINDING PROTEINcoord: 14..313
NoneNo IPR availableCDDcd00590RRM_SFcoord: 102..155
e-value: 3.25628E-18
score: 75.8045
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 189..261
e-value: 6.4E-24
score: 95.5
coord: 101..174
e-value: 7.0E-15
score: 65.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 190..258
e-value: 1.3E-16
score: 60.2
coord: 102..156
e-value: 2.4E-16
score: 59.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 188..265
score: 17.864565
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 100..168
score: 15.084535
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 170..313
e-value: 7.3E-30
score: 105.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 11..169
e-value: 2.9E-23
score: 84.5
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 91..170
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 172..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_214contigContig_214:155797..160068 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180319mRNA_17829Tribonema minus UTEX_B_3156 mRNAContig_214 155797..160068 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|180319|e_gw1.214.9.1 ID=Trimin1|180319|e_gw1.214.9.1|Name=jgi.p|Trimin1|180319|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=322bp
MVRSPPPSKAVAAANGKKAQESSEESESDSDESSSEEDERPATKVLKAAA
KKESASSEESSDEEEEEEEEEAPKADTAADGASAKKAPKAEEGVSTGAGT
KIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADS
DAANKSRERWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVD
EDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAG
TEIAGRPVRVDYAAPRAPRESFGGGGGGGGGRGGGRGGGRGGGRGGGRGG
RDGGGRGGGRGGGRCVCAGGV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf