mRNA_17829 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180319
Unique NamemRNA_17829
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA)

HSP 1 Score: 417 bits (1071), Expect = 1.120e-143
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1 
Query:  214 APKADTAADGASAKKAPKAEEGVSTGAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRERWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCVCAGGV 963
            APKADTAADGASAKKAPKAEEGVSTGAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRERWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCVCAGGV
Sbjct:   72 APKADTAADGASAKKAPKAEEGVSTGAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRERWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCVCAGGV 321
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 2.450e-66
Identity = 115/204 (56.37%), Postives = 149/204 (73.04%), Query Frame = 1 
Query:  253 KKAPKAEEGVSTGA---GTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRE-SFGGGG 828
            +KA  AEEG +  A    +KIY+RGLPW  ++++V+DFFK CG+I + + P + +GR+SGTA+V F  + AA K+ E        RWLKI+++ E+      G P  K KP GCTTVFIGNLSW +DED +R  FGECG+I SVRFA DRETG+F+GFGHVEF DGE VDAA+ +A +++ GRP+RVDYAAPRAPR+ SFGGGG
Sbjct:  264 RKADDAEEGDAKKAKSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELGGRWLKIMMSFEKPDHARNGEP--KVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 465
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.820e-60
Identity = 99/178 (55.62%), Postives = 126/178 (70.79%), Query Frame = 1 
Query:  289 GAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPR 798
            GAG K+Y+RGLPW AT++E+R++F  CGEI SC+LP   +GR+SGTA + F+  DA  K           RWL I  A+++   P+F A +  +KP  C TVF GNLSW+VDED +R  F ECGEI+S+RFATDRETG+FKGFGH+EF   +  DAAI MAGT+I GR VRVDYAA +
Sbjct:  203 GAGKKMYIRGLPWRATDDELREYFASCGEIVSCELPLQSDGRSSGTAEIEFSTKDACEKCMALNGEDFGGRWLSIKYASDK---PAFAARETSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYAADK 377
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A7S3UY59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY59_HETAK)

HSP 1 Score: 205 bits (522), Expect = 1.920e-58
Identity = 100/186 (53.76%), Postives = 131/186 (70.43%), Query Frame = 1 
Query:  295 GTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 828
            G +I+V+GLPW+AT++EV++FFK+CG I  CD+P DHNGRASGTA+V F+  D  NK+ E        RWLKI  A ER A    G     ++PEGC TVF GNLSWD+DE+++R  F +CG+I+SVRFA DRETG F+GFG+V F DG   D A+ + G  +AGR +R+DY+APR   +  GGGG
Sbjct:  330 GFRIFVKGLPWAATDDEVKEFFKDCGTILDCDMPKDHNGRASGTAYVSFSTDDERNKAYELDGATFGERWLKIEEARERPAAAKPG-----ERPEGCDTVFCGNLSWDIDEESLREFFKDCGDISSVRFAEDRETGKFRGFGYVSFYDGACTDEAMKLTGQVVAGREIRLDYSAPR---DRSGGGG 507
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A448ZJJ1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJJ1_9STRA)

HSP 1 Score: 203 bits (516), Expect = 5.330e-58
Identity = 102/186 (54.84%), Postives = 129/186 (69.35%), Query Frame = 1 
Query:  298 TKIYVRGLPWSATEEEVRDFFKECGE-IESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 828
            TK+Y+RGLPW ATE+ VRD+F +CG   +S +LP   +GR+SGTA + F D+D+A  + E        RWL I  +T +   P         K EGC TVF+GNL+W++DED++RAAF ECGEI  +RF+TDRETGDFKG+GH+EF   E  DAAI MAGT+I GR VRVDYA  R  R+SFGGGG
Sbjct:  243 TKLYIRGLPWRATEDAVRDYFAKCGSGPKSVELPLQDDGRSSGTAIIDFHDADSAAAAMELNGADFEGRWLSIKYSTPK---PILAPRQTTPKQEGCCTVFVGNLAWEIDEDSLRAAFAECGEITQIRFSTDRETGDFKGYGHIEFAQTESTDAAIKMAGTDIFGRAVRVDYANDR--RQSFGGGG 423
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A1Z5KL43_FISSO (Nucleolin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL43_FISSO)

HSP 1 Score: 202 bits (514), Expect = 2.190e-57
Identity = 98/173 (56.65%), Postives = 120/173 (69.36%), Query Frame = 1 
Query:  295 GTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYA 789
            G K+YVRGLPW A E EV++FF  CG I+SC++P   +GR+SGTA + F  ++ A  + E        RWL I  +T +   P   A +   K +GC TVF+GNL+WDVDED +R AFGECGEI SVRFATDRETG+FKGFGH+EF D E  D AI MAGT+I GR VRVDYA
Sbjct:  274 GNKVYVRGLPWKAEEHEVQEFFAACGPIKSCEMPLMDDGRSSGTAIIEFETNEGAAAAIELNGGDFQGRWLSIKYSTPK---PILSAREPTQKQDGCVTVFVGNLAWDVDEDTLRQAFGECGEITSVRFATDRETGEFKGFGHIEFTDTEATDKAIAMAGTDILGRQVRVDYA 443
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.340e-56
Identity = 96/184 (52.17%), Postives = 129/184 (70.11%), Query Frame = 1 
Query:  301 KIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 828
            K++++GLPW   E +++DFFK  G IES D P + +GRASGTA+VVF  +++A K+ E        RW+K++LA +    P  G     +KPEGC TVFIGNLSWD+DED VR  FG+CG+I SVRFA DRETG F+GFG+V+F DG+  D A+ + G+++ GR VR+DY+APR     FGGGG
Sbjct:  312 KVFMKGLPWETEEYQIKDFFKGIGTIESIDQPLNKDGRASGTAYVVFDSTESAEKALELDGGTVGERWVKLILARDIPPPPKPG-----EKPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPRG----FGGGG 486
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: W7TQX9_9STRA (RNA binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.440e-56
Identity = 99/191 (51.83%), Postives = 130/191 (68.06%), Query Frame = 1 
Query:  301 KIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKS----------RERWLKIVLATERAARPSFG-----APDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRES-FGGG 825
            K++V+GLPWSATEEEVR FF++CG + S +LP   +GR+SGTA++VF + D   K+            RW+++      AA    G     A    +KPEGC +VFIGNLSW++DE+ +R+AF  CGE+ SVRFATDRETG+F+GFGHV+F D    +AA+ MAGT + GR +RVDYA PR PRE  FGGG
Sbjct:  276 KVFVQGLPWSATEEEVRAFFQKCGPMTSVELPL-KDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGG 465
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A6V0BCC8_9STRA (Hypothetical protein n=3 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BCC8_9STRA)

HSP 1 Score: 191 bits (485), Expect = 6.160e-55
Identity = 96/186 (51.61%), Postives = 128/186 (68.82%), Query Frame = 1 
Query:  298 TKIYVRGLPWSATEEEVRDFFKECGE-IESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 828
            TK+Y+RGLPW ATEE V++FF +CG   ++ +LP   +GR+SGTA V F D+D+A  + E        RWL I  ++ +   P     +   K EGC TVF+GNLSWD+DED++RAAF ECG I+ +RF+TDRETGDFKG+GH+EF + +  D A+ MAGT+I GR VRVD+A  R  R+S GG G
Sbjct:   90 TKVYIRGLPWRATEEGVQEFFAKCGSGPKTVELPLQDDGRSSGTAIVDFHDADSAAAALELNGADFEGRWLSIKYSSPK---PILAPRETTQKQEGCCTVFVGNLSWDIDEDSLRAAFAECGTISQIRFSTDRETGDFKGYGHIEFTETDATDLAVKMAGTDILGRAVRVDFANDR--RQSSGGFG 270
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BLAST of jgi.p|Trimin1|180319 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA)

HSP 1 Score: 190 bits (483), Expect = 4.820e-54
Identity = 94/178 (52.81%), Postives = 124/178 (69.66%), Query Frame = 1 
Query:  289 GAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPR 798
            GA +KI++RGLPW A+E+E+R+ F  CGEI+  + P + +GR+SGTA +VF  + +A  + E        RWL I LA ++  +    AP +K  PEGC T+FIGNLSW +DED+VR AF ECGEI +VRFA D+ETGDF+GFGHVEF + +    A+ MAGT+I GR VRVDYA  R
Sbjct:  201 GAKSKIFIRGLPWRASEDEIREHFGGCGEIKEVEQPMNSDGRSSGTALIVFGSASSAESAVEMNGGDFGGRWLDIKLADDKPIQTER-APSEK--PEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYAQDR 375
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180319 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAT4_9STRA1.120e-143100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LF99_ECTSI2.450e-6656.37Protein for assembly of pre-ribosomal particles co... [more]
A0A7S3Q248_9STRA1.820e-6055.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3UY59_HETAK1.920e-5853.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A448ZJJ1_9STRA5.330e-5854.84Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5KL43_FISSO2.190e-5756.65Nucleolin n=2 Tax=Fistulifera solaris TaxID=151956... [more]
A0A7S2V571_9STRA1.340e-5652.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TQX9_9STRA2.440e-5651.83RNA binding protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A6V0BCC8_9STRA6.160e-5551.61Hypothetical protein n=3 Tax=Pseudo-nitzschia aust... [more]
A0A7S2RIH6_9STRA4.820e-5452.81Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_214contigContig_214:155797..160068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180319|e_gw1.214.9.1
BRITEko00000,ko00001,ko03009,ko03019,ko03036,ko03041
KEGG Pathwayko03040,ko05130,map03040,map05130
KEGG koko:K11294,ko:K12741,ko:K12885
DescriptionRNA binding
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
Evalue4.01e-67
Seed ortholog2880.D8LF99
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein for assembly of pre-ribosomal particles containing 18S rRNA
Ec32 orthologEc-01_004160.1
TranscriptId180641
TrackFilteredModels1
ProteinId180319
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180319gene_17829Tribonema minus UTEX_B_3156 geneContig_214 155797..160068 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17829_1exon_17829_1Tribonema minus UTEX_B_3156 exonContig_214 155797..155934 +
exon_17829_2exon_17829_2Tribonema minus UTEX_B_3156 exonContig_214 157629..157712 +
exon_17829_3exon_17829_3Tribonema minus UTEX_B_3156 exonContig_214 158956..159198 +
exon_17829_4exon_17829_4Tribonema minus UTEX_B_3156 exonContig_214 159568..160068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17829CDS_17829Tribonema minus UTEX_B_3156 CDSContig_214 155797..155934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180319Trimin1|180319|e_gw1.214.9.1Tribonema minus UTEX_B_3156 polypeptideContig_214 155797..160068 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17829 ID=mRNA_17829|Name=jgi.p|Trimin1|180319|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=966bp|location=Sequence derived from alignment at Contig_214:155797..160068+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGCTCGCCGCCCCCTTCAAAGGCTGTCGCCGCCGCGAACGGCAA
GAAGGCGCAGGAGTCATCCGAAGAGTCTGAGTCAGACTCAGACGAAAGCA
GCAGCGAGGAGGACGAACGGCCAGCAACAAAGGTACTTAAGGCGGCGGCA
AAGAAGGAGAGCGCGTCGTCCGAAGAGTCCAGCGACGAGGAGGAGGAGGA
GGAAGAAGAGGAGGCTCCCAAGGCCGACACCGCAGCCGACGGCGCGTCCG
CCAAGAAGGCGCCCAAGGCCGAGGAGGGGGTCAGCACCGGCGCGGGCACC
AAGATCTATGTGCGCGGCCTGCCGTGGTCGGCAACGGAGGAGGAGGTTCG
CGACTTCTTCAAGGAGTGCGGGGAGATTGAGTCGTGCGACCTGCCCACGG
ACCACAACGGGCGCGCGTCGGGGACGGCGTTCGTCGTGTTTGCGGACTCC
GACGCTGCTAATAAGAGTCGCGAGCGCTGGCTCAAGATCGTGCTCGCGAC
GGAGCGCGCGGCGCGCCCGTCCTTCGGCGCGCCCGACAAGAAGGACAAGC
CCGAGGGCTGCACGACGGTCTTCATCGGCAACCTGTCGTGGGACGTGGAC
GAGGACGCGGTGCGCGCGGCCTTCGGGGAGTGCGGCGAGATCGCCTCCGT
GCGCTTTGCGACGGACCGCGAGACGGGCGACTTCAAGGGCTTCGGCCACG
TCGAGTTTGTCGACGGCGAGGGCGTTGACGCCGCCATCGACATGGCGGGC
ACGGAGATTGCGGGGCGCCCCGTGCGCGTGGACTACGCCGCGCCGCGCGC
GCCGCGCGAGTCGTTCGGCGGCGGCGGCGGCGGCGGCGGGGGGCGCGGCG
GCGGCCGCGGCGGGGGCCGCGGCGGCGGCAGGGGGGGAGGGCGGGGGGGG
CGCGACGGCGGCGGGCGCGGCGGCGGCAGGGGCGGCGGCAGGTGCGTGTG
CGCTGGTGGTGTTTGA
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protein sequence of jgi.p|Trimin1|180319

>Trimin1|180319|e_gw1.214.9.1 ID=Trimin1|180319|e_gw1.214.9.1|Name=jgi.p|Trimin1|180319|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=322bp
MVRSPPPSKAVAAANGKKAQESSEESESDSDESSSEEDERPATKVLKAAA
KKESASSEESSDEEEEEEEEEAPKADTAADGASAKKAPKAEEGVSTGAGT
KIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADS
DAANKSRERWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVD
EDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAG
TEIAGRPVRVDYAAPRAPRESFGGGGGGGGGRGGGRGGGRGGGRGGGRGG
RDGGGRGGGRGGGRCVCAGGV*
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mRNA from alignment at Contig_214:155797..160068+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17829 ID=mRNA_17829|Name=jgi.p|Trimin1|180319|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4272bp|location=Sequence derived from alignment at Contig_214:155797..160068+ (Tribonema minus UTEX_B_3156 )
ATGGTTCGCTCGCCGCCCCCTTCAAAGGCTGTCGCCGCCGCGAACGGCAA
GAAGGCGCAGGAGTCATCCGAAGAGTCTGAGTCAGACTCAGACGAAAGCA
GCAGCGAGGAGGACGAACGGCCAGCAACAAAGGTACTTGTCGGAGTTTAC
TGACTCAGTTTACGATGTTGCGGTGGTATAGATGGGTGCCTTCCTGGGCG
CTAGTAGCGTGAGCATCCATGCAGAAATTTGAATTATTTCAACTTCAAGG
TCCAATTTCAACTGACACCATTGCCGTGGCCACATCCATGAGGCACCAAT
TGTGAACAGTGGCTTGAGTGACCTTGTTGCCCCTGAAGCAGTATGGCGCA
GTGCTGTGACAATTGCGATATGATTACAATGAGCTTCAGTCTCAGCTTTG
AGTATACAAACACGCATTAAAAAGATCGTTGAGCTCTGGGTGACCAGGGA
TGGTTACCTGTATGTGCCTTCCACCAATAACCGTGGTCGCCGCTGCTGCA
GTCATTGGCCACGAATCAAACAGTGAGTATGTTCCGTTGGTGCGTAGTCA
ACACGCTCGCTGAGCACCTGCTGGCAAAGCAGTGGGGTCTACTGCCACGA
CATGCGAAACAGCCGTCAAGTTTTGCAGCAGCACGGTGCAACTAGCGGTG
CATCGTACGGCACGGTTTGTGTTGCTCAGGGCGTTTATTGCCTCGCATGT
CACAAAGGCAGCGCAGTTTTAGAAGAATGCTGTCCCCTCAAATCGCTGAC
AGACAGTAGATCTGATTAAGAGACAAAGCGCAGTAGTTGTAACGCTGTTC
TCACGGGTTCGCCCGCCGCTTTTGCGCGAGGCGGCTGCCGCCTTGCTGAA
GGTCCCTTCAAAGGCCAATGCCCTGCCGAAGGGCGGGAAGGCAAAAAAGG
CTGAGTCATCAGACGAGTCTGAGTCATCAGATGAGAGTAGCAGCGAGGAG
GAGGAGCAGAGAGCGCCGCCTGCAAAGAAGGTTAGCCGCGCAAGCGTGGT
GTTTGGTTTCAGGCGTAGCGACACCTGGTGTTCTGTCTCTCGCCGACTTG
TTAACGGTGTATGCAGTCTACAGGCCAAGGCTCGTCAGCAAGTGGGCATG
CACCATTGGAGCGAACTTCAAGGGTTACTTTAAGAGGCGCAGTCATGATG
AACTTCAAGGGGAGCCTCGAGTGCGTGTGTGTGTTGCAGGCAGCAAGACG
CGCTACAGTAGTGCGCGCTTGCAGCAGGCAATCGTGTCCAGTATTGAGCA
GAGGATGCATGCGCGACGAACATTGCTCCGGCAATGCAGCGTTGCTGTCT
AACACTGCAGCACCGGGCTGTCTAACACTGCAGCACCGCTCGCTGGCAGC
TCTGCAGCGGTCACCAGCTTCGGAGGTGCTGCTTTTGTCGCACGGCGGTA
GAGAAGCTCATCATCGTACAGAACACTATCCTCACTTTTCATTTATTTAC
CATACACAACACTATTCCTTGCATTTCGCTCATCGAGTTCCGGCGGCTAC
CGTTAGAGTGTGTCCCTCTGCATCTGACGCTGTCGCATTCATGTCGGTTG
CACGTGCGCTACCATTTGTTTGATTAGTTGTAGACCGTGCCTTTTTGGCA
GGCACCTCGCGAGCGTCGTTCCCTTTGGCGTACTTGAAACCTGTCAGTGC
CGATGATCGTTCGAAGTGTAGTGCTAGTGCTAGCTCGTACACCGTGTAAC
GTCGATTACCCTTTGCAGCGGTTGACACTTCAACTCGTGACGTGCCTGCG
TATCACCACCGCCCGCTGCCCCTTTGCAATGGATTGACACTTCAACTCGT
GACGTGTCATCGCTCAGGCTGCCCCCGCAAAGAAGGCGGCGGCAAAGAAG
GAGAGCGCGTCGTCCGAAGAGTCCAGCGACGAGGAGGAGGAGGAGGAAGA
AGAGGAGGCTCCCAAGGTCAGCAGTAACTTGAAGTTCTGGCTGTGATACT
TTGTTATTGAGTGTTTCAGATACCTACTCCATTGGTGTGGATTTGGCACA
AGGTAATTTGAACGGCAGGCAGTCTGTTGGCGCCCGCGCCGGTTGGCAAG
GACTTGGCACAAACTTGAAGTTGCCACTTGATGATGATGATATGTAGCGT
TCCTTACTACACCCACACCATGTTCGCGCTGTATTAAACTGAGCCATGCA
CGCAAGTGCGCCATATTTGTTGCCAGGCTCCTTGCAGAGACCACTTTTCC
AGGGCCTCAAACTGGCGGAACTTGACCTCGAACGTCCCCTCTTCCCTGTG
TAGGCCCAGAAGTGCTTGGCAAATCCGTCCTCCAGAACTCGAACTTGAAC
ATCACCTCCCCCCCCCCCTCCGCCCTCCGTGTAGGCTCAAAAGTCCTTCA
GAACTCAAACTTGAACATCACCTCCCCCCCCCCTCTCCCCCCTCCGTGTA
GGCTCAGAAGCGCAAGGCCGATGCCGCCGCAGACCTCCGCTTGTCTTTAG
CCTGAAATCCGCCCTTCTGAACTTGAATTGTGCCCCCAACCCTACCCCCC
CCCCCCTCCTGAAGGCTCAGAAGCGCAAGGGTGCCGCCGCCTCCGCTTCT
CTTTGGCTCTAAATCGGCCCTTCAGAACTTGAAACCAACTGTGCATCCCC
CCCCCCCCTCCCTGCAGGCTCAGAAGCGTGAGGCCGATGCCGCCACGGAC
GGCGCCTCCGCTTCTCTTTGCCTTGGCCCTTAAAAACTAACTAGGCCTTC
ATAACTTGAAGTTGAACATCGTGAACCCCCCCCCCCCCCCCATGTGTGAG
CCCAGAAGCTCTAGAGCTTCTTCCCCCCCCCCCATGTGTGAGCCCAGAAG
CTCTATAGAAGCTCTATGGCAAATCTGCCCTTCAGAACTCGAACTTGAGC
ATCACTCCCCCCCCCCCCCTGATGCAGGCTCAGAAGGGCAAGGCTGCCGC
CGCCTCCGCCTCTCTTTGGCATTAATCTTGCCTTTTTGAACTGTGCCAAC
TTGAACTGGTGCCCCCAACCCTCATTATACCCCTTCCCCTCCCCTTCACT
CTTTATAGGCGCAGAAGCGCAAGGCCGACGCCGACGGCGCCTTGGCCTCT
CTATGGCCACATCTCTATGGCCTAAAACCGGCCCTTTCGAACTTGAACTG
TGCCCCCTAACCCCCAACCCCCCCCCCAACCCCCCTCCATGTAGGCCCAG
AAGCGCAAGGCCGACACCGCAGCCGACGGCGCGTCCGCCAAGAAGGCGCC
CAAGGCCGAGGAGGGGGTCAGCACCGGCGCGGGCACCAAGATCTATGTGC
GCGGCCTGCCGTGGTCGGCAACGGAGGAGGAGGTTCGCGACTTCTTCAAG
GAGTGCGGGGAGATTGAGTCGTGCGACCTGCCCACGGACCACAACGGGCG
CGCGTCGGGGACGGCGTTCGTCGTGTTTGCGGACTCCGACGCTGCTAATA
AGGTGCGTGCGCAATTACCTCCATCACTGGTACTTCACCATCAGTGCTTT
GACGAAAATGAGAGTCGTGCGACCTGCCCACAGACCACAACGGGCGTTTG
TGGTGTTTGCGGACTCCGACGGCGCCAGTAAGGTATGTATTCATCACGCC
TTGATGCTTCTGTAGTTCATCCATGGCGCTTTTGCGTATTTGTGGCATTG
AGATTGAGAGTCGTGCGACCTGCCCACGGACCACAACGGGCGCGCCTCGC
GGACGGCGTTCGTGGTGTTTGCGTACTCCGACGGCGCTAAGAAGGTATGT
TTGTATCGAGACTAGTACTTGCGTGCTTCATTAGTAGCTTTGGCGTACTT
GATTGTGGCATTGAGTTTTAGAGTCGCGAGCGCTGGCTCAAGATCGTGCT
CGCGACGGAGCGCGCGGCGCGCCCGTCCTTCGGCGCGCCCGACAAGAAGG
ACAAGCCCGAGGGCTGCACGACGGTCTTCATCGGCAACCTGTCGTGGGAC
GTGGACGAGGACGCGGTGCGCGCGGCCTTCGGGGAGTGCGGCGAGATCGC
CTCCGTGCGCTTTGCGACGGACCGCGAGACGGGCGACTTCAAGGGCTTCG
GCCACGTCGAGTTTGTCGACGGCGAGGGCGTTGACGCCGCCATCGACATG
GCGGGCACGGAGATTGCGGGGCGCCCCGTGCGCGTGGACTACGCCGCGCC
GCGCGCGCCGCGCGAGTCGTTCGGCGGCGGCGGCGGCGGCGGCGGGGGGC
GCGGCGGCGGCCGCGGCGGGGGCCGCGGCGGCGGCAGGGGGGGAGGGCGG
GGGGGGCGCGACGGCGGCGGGCGCGGCGGCGGCAGGGGCGGCGGCAGGTG
CGTGTGCGCTGGTGGTGTTTGA
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Coding sequence (CDS) from alignment at Contig_214:155797..160068+

>mRNA_17829 ID=mRNA_17829|Name=jgi.p|Trimin1|180319|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=966bp|location=Sequence derived from alignment at Contig_214:155797..160068+ (Tribonema minus UTEX_B_3156 )
ATGGTTCGCTCGCCGCCCCCTTCAAAGGCTGTCGCCGCCGCGAACGGCAA
GAAGGCGCAGGAGTCATCCGAAGAGTCTGAGTCAGACTCAGACGAAAGCA
GCAGCGAGGAGGACGAACGGCCAGCAACAAAGGTACTTAAGGCGGCGGCA
AAGAAGGAGAGCGCGTCGTCCGAAGAGTCCAGCGACGAGGAGGAGGAGGA
GGAAGAAGAGGAGGCTCCCAAGGCCGACACCGCAGCCGACGGCGCGTCCG
CCAAGAAGGCGCCCAAGGCCGAGGAGGGGGTCAGCACCGGCGCGGGCACC
AAGATCTATGTGCGCGGCCTGCCGTGGTCGGCAACGGAGGAGGAGGTTCG
CGACTTCTTCAAGGAGTGCGGGGAGATTGAGTCGTGCGACCTGCCCACGG
ACCACAACGGGCGCGCGTCGGGGACGGCGTTCGTCGTGTTTGCGGACTCC
GACGCTGCTAATAAGAGTCGCGAGCGCTGGCTCAAGATCGTGCTCGCGAC
GGAGCGCGCGGCGCGCCCGTCCTTCGGCGCGCCCGACAAGAAGGACAAGC
CCGAGGGCTGCACGACGGTCTTCATCGGCAACCTGTCGTGGGACGTGGAC
GAGGACGCGGTGCGCGCGGCCTTCGGGGAGTGCGGCGAGATCGCCTCCGT
GCGCTTTGCGACGGACCGCGAGACGGGCGACTTCAAGGGCTTCGGCCACG
TCGAGTTTGTCGACGGCGAGGGCGTTGACGCCGCCATCGACATGGCGGGC
ACGGAGATTGCGGGGCGCCCCGTGCGCGTGGACTACGCCGCGCCGCGCGC
GCCGCGCGAGTCGTTCGGCGGCGGCGGCGGCGGCGGCGGGGGGCGCGGCG
GCGGCCGCGGCGGGGGCCGCGGCGGCGGCAGGGGGGGAGGGCGGGGGGGG
CGCGACGGCGGCGGGCGCGGCGGCGGCAGGGGCGGCGGCAGGTGCGTGTG
CGCTGGTGGTGTTTGA
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