Trimin1|175552|e_gw1.127.3.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|175552
Unique NameTrimin1|175552|e_gw1.127.3.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length191
Homology
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA)

HSP 1 Score: 375 bits (963), Expect = 1.690e-131
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MAQAALNGVSDEGELDKDNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGERSLSPS 190
            MAQAALNGVSDEGELDKDNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGERSLSPS
Sbjct:    1 MAQAALNGVSDEGELDKDNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGERSLSPS 190          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 290 bits (743), Expect = 7.100e-96
Identity = 144/174 (82.76%), Postives = 158/174 (90.80%), Query Frame = 0
Query:   14 ELDKDNDILGKIFVG---GISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184
            E+DKD+D+ GK+FVG   GISWQTS+ESLS +FSKFGALADVALMKDKYTGQPRGFGFIKFEDP+V+D VL Q EH+IDGR VDVKRAVPKSEAPGP+R  R AD NKVFVGGLAPSVT AEFR YFEGFGAVSDAVVMFDRQT RSRGFGFVTFQ++SVVQNVLMGTHE+NG+
Sbjct:    6 EIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGK 179          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 4.080e-82
Identity = 127/178 (71.35%), Postives = 152/178 (85.39%), Query Frame = 0
Query:    8 GVSDEGELDKDNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPS-RTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184
            G++     DKDND+ GK+F+GGISWQT++E L  +F K+G LAD+ALMKDKYTG PRGFGFIKFED  V+D +L+Q EH IDG+ VDVKRAVPKSEAPGPS R++RPA+TNK+FVGGLAP+V +AEFR YFE FG V DAVVMFDRQT RSRGFGFVTFQED+VV +++MGTHEING+
Sbjct:  133 GIAGSVAHDKDNDVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMGTHEINGK 309          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: A0A6H5JV91_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV91_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.570e-61
Identity = 101/131 (77.10%), Postives = 115/131 (87.79%), Query Frame = 0
Query:   55 MKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPS-RTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184
            MKDKYTG PRGFGFIKFED  V+D +L+Q EH IDG+ VDVKRAVPKSEAPGPS R++RPA+TNK+FVGGLAP+V +AEFR YFE FG V DAVVMFDRQT RSRGFGFVTFQED+VV  ++MGTHEING+
Sbjct:    1 MKDKYTGHPRGFGFIKFEDVTVLDEILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHEIMMGTHEINGK 130          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.910e-58
Identity = 93/162 (57.41%), Postives = 123/162 (75.93%), Query Frame = 0
Query:   23 GKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184
            GK+F+GG+SWQT+++ L  YF KFG L DVA+MKDK+TGQPRGFGF+ F+D +VV+ VL Q  H++DGR VD KRAV + E+  P       ++ K+FVGGLAPSV   +FR YF+ FG ++DAVVM DR T RSRGFGFVT+ ++S V++VL G+HEI G+
Sbjct:    5 GKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQT-HTLDGRQVDCKRAVRREESSAPRGGGYGGESKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDVLAGSHEIKGK 165          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: A0A7S3UV52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV52_HETAK)

HSP 1 Score: 196 bits (499), Expect = 2.110e-58
Identity = 99/181 (54.70%), Postives = 133/181 (73.48%), Query Frame = 0
Query:    3 QAALNGVSDEGELDKDNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGP-SRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEIN 182
            +AA++G  D G+  + +DI  KIFVGGISW T+++ L  YF KFG +  V LMKD++TGQPRGF F+KFED +V+D VL    HSIDGR VDVKRAVP+ +AP   + +++P +  K+FVGGLAP+V  A+F+ YF  FG V+DAVVM DR+T RSRGFGF+TF+ +  V++ L  TH I+
Sbjct:   30 EAAVDG--DAGKKTEQDDIEFKIFVGGISWATTEDGLKFYFDKFGKVEQVNLMKDRHTGQPRGFAFVKFEDKSVIDSVLQAEAHSIDGRNVDVKRAVPRDQAPARGANSSKPVEALKIFVGGLAPTVNEADFKEYFSKFGEVTDAVVMIDRKTSRSRGFGFITFKTEQSVKDALKETHLIH 208          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: A0A835ZEL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL4_9STRA)

HSP 1 Score: 189 bits (481), Expect = 5.960e-58
Identity = 97/162 (59.88%), Postives = 119/162 (73.46%), Query Frame = 0
Query:   18 DNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSE--APGPSRTARPADTN-----KVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQ 172
            D   +GKIFVGGI+WQT+D +L  YF +FG L D+ALMKDK TGQPRGFGFIKF+DPA+ +VVL Q EH+IDGR VDVKRA P+ +   P PSR+A PA  N     K+FVGGL  SV    FR +FE FG ++D+V+M+DR T RSRGFGF+TF+    VQ
Sbjct:   28 DGSEIGKIFVGGIAWQTTDSALRYYFERFGELDDIALMKDKMTGQPRGFGFIKFKDPAIAEVVLGQ-EHNIDGRIVDVKRATPRQQNAGPAPSRSAPPARGNGPPSMKIFVGGLEQSVDDPAFRAHFEQFGVITDSVIMYDRVTKRSRGFGFITFENQGSVQ 188          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.340e-56
Identity = 96/175 (54.86%), Postives = 128/175 (73.14%), Query Frame = 0
Query:   23 GKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSE-APGPSRTARPA------------DTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184
            GK+F+GG+SW+T++E+L  +F K+G L D ALMKDK++GQPRGFGF+ F D AV+D VL ++ H+IDGRTV+VKRA+P+ + A GPS                  ++ KVFVGGL PSVT  +FR YFE FG ++DAVVMFDR+T RSRGFGFVTF+E+  V  V+  THE++G+
Sbjct:  102 GKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEES-HTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAVAEVISKTHELHGK 275          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: W4FGL9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGL9_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.480e-56
Identity = 93/178 (52.25%), Postives = 127/178 (71.35%), Query Frame = 0
Query:   23 GKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPG----------------PSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184
            GKIFVGG+SW+T++++L  +F ++GAL D ALMKDKY+GQPRGFGF+ FED +VVD VL++  H++DGR V+VKRAVP+  A G                     RP+++ K+FVGGL PSVT  +FR YFE FG ++DA+VM DR T RSRGFGFV+F+E+  V  V+  +HE++G+
Sbjct:   89 GKIFVGGVSWETTEDNLRSHFGQYGALTDAALMKDKYSGQPRGFGFVTFEDASVVDRVLSET-HTLDGRNVEVKRAVPRDSAGGGXXXXXXXXXXXXXXXXXXXGRPSESKKIFVGGLPPSVTNDDFRAYFEDFGKITDAIVMMDRDTQRSRGFGFVSFEEEGAVAEVISKSHELHGK 265          
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Match: A0A6G0XAN2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAN2_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.610e-55
Identity = 94/178 (52.81%), Postives = 129/178 (72.47%), Query Frame = 0
Query:   23 GKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSE-----APGPSRTA-----------RPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184
            GKIFVGG+SW+T++++L  +FS++G L D ALMKDKY+GQPRGFGF+ FEDP+VVD VL +  H++DGR V+VKRAVP+       + GPS +            R  ++ K+FVGGL P+VT  +FR+YFE FG ++DAVVM DR T RSRGFGFV+F+E+  V  V+  +HE++G+
Sbjct:   76 GKIFVGGVSWETTEDNLRAHFSQYGNLTDAALMKDKYSGQPRGFGFVTFEDPSVVDRVLNET-HNLDGRNVEVKRAVPRDSMVGGRSGGPSTSGSGYSDGRSGGGRTIESKKIFVGGLPPTVTNEDFRSYFEDFGKITDAVVMMDRDTQRSRGFGFVSFEEEGAVAEVISKSHELHGK 252          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175552 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMD2_9STRA1.690e-131100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAL5_9STRA7.100e-9682.76Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FW71_ECTSI4.080e-8271.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV91_9PHAE1.570e-6177.10RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XZ50_9STRA1.910e-5857.41Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3UV52_HETAK2.110e-5854.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZEL4_9STRA5.960e-5859.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0WG76_9STRA4.340e-5654.86Uncharacterized protein AlNc14C88G5606 n=1 Tax=Alb... [more]
W4FGL9_9STRA5.480e-5652.25Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A6G0XAN2_9STRA1.610e-5552.81Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 118..190
e-value: 9.1E-16
score: 68.4
coord: 24..96
e-value: 1.7E-22
score: 90.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 119..173
e-value: 2.4E-12
score: 46.5
coord: 25..81
e-value: 1.6E-12
score: 47.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 117..190
score: 14.965146
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 23..100
score: 16.414856
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 103..188
e-value: 1.5E-19
score: 72.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 23..102
e-value: 3.1E-25
score: 90.2
NoneNo IPR availablePANTHERPTHR48032RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6coord: 20..184
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 111..180
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 23..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_127contigContig_127:140898..143315 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175552mRNA_14850Tribonema minus UTEX_B_3156 mRNAContig_127 140898..143315 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|175552|e_gw1.127.3.1 ID=Trimin1|175552|e_gw1.127.3.1|Name=jgi.p|Trimin1|175552|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp
MAQAALNGVSDEGELDKDNDILGKIFVGGISWQTSDESLSKYFSKFGALA
DVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVP
KSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMF
DRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGERSLSPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf