Trimin1|173453|e_gw1.102.101.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|173453
Unique NameTrimin1|173453|e_gw1.102.101.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length245
Homology
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 3.960e-159
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MRRRLRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 244
            MRRRLRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ
Sbjct:    1 MRRRLRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 244          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.440e-54
Identity = 111/239 (46.44%), Postives = 151/239 (63.18%), Query Frame = 0
Query:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 244
            R DGR  +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+ + A ++VS++ + G  +SADAE E  +RR+LEE V  +RYPR+V+SV++QV+ DDG+VLSAA+NA  MAL++AGVEM GM ++ T C + + S            G S L LDP  +EE    AT ++A L+   G+L+    G +  EE FA  EAA     AV  ++R + E KV R+   ++
Sbjct:    5 RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVS------------GRSVL-LDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.030e-43
Identity = 101/230 (43.91%), Postives = 134/230 (58.26%), Query Frame = 0
Query:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAK 235
            R DGR   +IR L  +QG+LNRADGS RF  G TSVL +V GPA    +++EK D A +EV ++A+KGA T+ D E E  +R+T E  V +  YPR+VIS+ VQV+ DDGS+L+ AINA  +AL+DAG+ M  +  A T                   L +  L LDP+  E  T  ATV  A    +DGILT   TG L   + FA SE  R+A D+V  ++R + E K
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSI----------------LEDGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETK 221          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.530e-43
Identity = 101/236 (42.80%), Postives = 139/236 (58.90%), Query Frame = 0
Query:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVA 241
            R DGR   +IR L  +QG+LNRADGS RF  G+TSVL +V GPA    ++ EK D A +EV +++DKGA T+ D E E  +++T +  V V  YPR+VIS+ VQV+ DDGS+L+ AINA  +AL+DAG+ M  +  A T                   L +  L LDPS +E     A+V  A    +DGILT   TG +   + FAASE  R+A D+V  ++R A E+K  ++ A
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSI----------------LDDGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNAA 229          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A1Y1IJQ6_KLENI (Exosome complex component RRP46 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJQ6_KLENI)

HSP 1 Score: 145 bits (367), Expect = 2.070e-39
Identity = 96/240 (40.00%), Postives = 137/240 (57.08%), Query Frame = 0
Query:    5 LRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAV-----LAGSDG------ILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVE 233
            LR DGRT +Q+RG+  D+G+L+RADGS ++    TSVLV VYGP      K+E P++A++EV W+   G Q   + E E+ +RRTLE  V    +PR+ ISVVVQV+ DDGS+LS AINA   ALVDAG+ M G+  + T   +     A          G +HLQLDP+  E+   +ATV LA+      A S+G      ++T    G +  EE   A +  R A   ++ + R +++
Sbjct:    7 LRKDGRTFNQLRGMVCDRGLLHRADGSAKWSQDGTSVLVGVYGPKN-MPPKREDPEKAVLEVLWKPKSGIQGPEEREAEIILRRTLEAVVLAPLFPRAGISVVVQVIHDDGSLLSCAINAACAALVDAGIPMTGLLASVTIALAKRDDGAG---------GGAHLQLDPTREEQDGAQATVCLALETTPKAATSNGSVEGEAVVTSTTRGAMAIEEYLEALDRCRMASRTINAFARLSLD 236          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A151ZDL9_9MYCE (RNase_PH domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZDL9_9MYCE)

HSP 1 Score: 140 bits (353), Expect = 1.790e-37
Identity = 84/237 (35.44%), Postives = 135/237 (56.96%), Query Frame = 0
Query:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVAN 242
            R DGR  +QIR   ++Q +LN+ADGS RF    +SVL AVYGP +    +K+K  +++IEVS+    G  T  D E+EL ++  LE  +    +PR+ IS++ QV  DDGS++S AINA  +AL+DAG+EM G+  + T C++   S                + LDP+A EE   ++  ++A  + S  I+  K  G L  +  F +   +++ACD V  Y++ AV+ +++  ++ 
Sbjct:    5 RNDGRLNNQIRAFESEQSLLNKADGSARFTQNKSSVLAAVYGPIEVKNSRKQKILKSLIEVSFTPSVGNTTYLDKEKELLIKNALESIILTTLHPRTQISIIFQVFSDDGSIISCAINAACLALLDAGIEMQGLIGSVTLCYNHDKS----------------IYLDPTAQEEKECKSLSVIAYGSQSSQIIMNKTEGTLSMDLYFKSLPLSKEACDKVISYIKLAVKNRIMGTIST 225          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.710e-37
Identity = 91/224 (40.62%), Postives = 128/224 (57.14%), Query Frame = 0
Query:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLR 229
            R DGR G+++R L ++QG L RADGS R   G+++VLVAVYGP Q   ++ EK  RA ++V ++ +KG  TS + E E  +R+T E  V    +PR+VIS+VVQ L      LS AINA ++AL+DAGV M  +  +AT                   L +  L LDPS +EE  + + V  A  + SD +LT    G L  E+ FA SEA R+A ++V  + R
Sbjct:    5 RHDGRAGNELRPLASEQGALFRADGSARVAHGSSAVLVAVYGPGQAKSRRSEKLHRAALDVCFKLEKGVLTSKEKEYEQVIRQTFEPVVVTENFPRAVISIVVQHL------LSVAINAVSLALLDAGVPMTSVVTSATCGL----------------LPDGTLFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFR 206          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: K3WUR4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUR4_GLOUD)

HSP 1 Score: 138 bits (347), Expect = 9.640e-37
Identity = 88/224 (39.29%), Postives = 130/224 (58.04%), Query Frame = 0
Query:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLR 229
            R DGR G+++R   +DQG L RADGS R   GN++VL AVYGP Q   ++ E  ++A ++V ++ +KG  TS + E E  +R+T E  +    +PR+VIS+VVQ L      LS AINA ++AL+DAGV M+ +  +AT                   L + +L LDPS +EE  + + V  A  + +DG+LT    G L  E+ FA SEA ++A ++V  +LR
Sbjct:    7 RHDGRAGNELRPFASDQGALFRADGSARMSHGNSTVLAAVYGPGQAKNRRNEHIEKATLDVCFKLEKGQLTSKEKEYEQIIRQTFEPVIVADDFPRAVISIVVQHL------LSVAINAVSLALLDAGVPMLSIVTSATCGL----------------LPDGNLFLDPSLAEEELSTSLVTTACSSTNDGVLTSLTKGLLTEEQYFACSEACQRASESVHAFLR 208          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.200e-36
Identity = 94/230 (40.87%), Postives = 129/230 (56.09%), Query Frame = 0
Query:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAK 235
            R DGR   +IR L  +Q +LNRADGS RF  G +SVL +V GPA    +++EK   A +EV+++A+KGA T+ D E E  +R+T E  + +  +PR+VISV VQV+ DDGS+LS AINA  +AL+DAG+ M  +  A T                   L +    LD S +E     A+V  A    +DGILT   TG L     FA SE  R+A  +V  ++R + E K
Sbjct:    9 REDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSI----------------LDDGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222          
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.250e-36
Identity = 95/230 (41.30%), Postives = 138/230 (60.00%), Query Frame = 0
Query:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAK 235
            R DGR+  +IR L  +QG+LNRADGS RF  G TSV+ +V GPA    +++E  ++A ++V ++A+KG  T+ D E EL +R+T E  + +  +PR+VIS+ VQV+ DDGS+L+ +INA  +AL+DAG+ M  + V A  C                 L +S L +DPS  E  T  ATV  A  A +  ILT   +G L  E+ FA SE  R+A D+V  ++R + E+K
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSV-VGAITCSV---------------LEDSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF16_9STRA3.960e-159100.00Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
D7FVT2_ECTSI2.440e-5446.44RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A485KL27_9STRA3.030e-4343.91Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024TBK6_9STRA4.530e-4342.80Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A1Y1IJQ6_KLENI2.070e-3940.00Exosome complex component RRP46 n=1 Tax=Klebsormid... [more]
A0A151ZDL9_9MYCE1.790e-3735.44RNase_PH domain-containing protein n=1 Tax=Tieghem... [more]
A0A5D6XHQ5_9STRA4.710e-3740.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WUR4_GLOUD9.640e-3739.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0WBP6_9STRA1.200e-3640.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZVY3_9STRA2.250e-3641.30U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 14..135
e-value: 6.7E-23
score: 81.7
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..242
e-value: 1.2E-52
score: 180.7
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 139..219
e-value: 1.1E-4
score: 22.1
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 6..235
NoneNo IPR availableCDDcd11372RNase_PH_RRP46coord: 15..229
e-value: 5.94492E-64
score: 196.246
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 3..134
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 167..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:522900..526738 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173453mRNA_11853Tribonema minus UTEX_B_3156 mRNAContig_102 522900..526738 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|173453|e_gw1.102.101.1 ID=Trimin1|173453|e_gw1.102.101.1|Name=jgi.p|Trimin1|173453|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp
MRRRLRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQ
PAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYP
RSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGS
GSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMK
MTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom_sf
IPR015847ExoRNase_PH_dom2
IPR020568Ribosomal_S5_D2-typ_fold
IPR036345ExoRNase_PH_dom2_sf