mRNA_11853 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173453
Unique NamemRNA_11853
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 3.960e-159
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 
Query:    1 MRRRLRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 732
            MRRRLRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ
Sbjct:    1 MRRRLRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 244
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BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.440e-54
Identity = 111/239 (46.44%), Postives = 151/239 (63.18%), Query Frame = 1 
Query:   16 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 732
            R DGR  +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+ + A ++VS++ + G  +SADAE E  +RR+LEE V  +RYPR+V+SV++QV+ DDG+VLSAA+NA  MAL++AGVEM GM ++ T C + + S            G S L LDP  +EE    AT ++A L+   G+L+    G +  EE FA  EAA     AV  ++R + E KV R+   ++
Sbjct:    5 RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVS------------GRSVL-LDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230
[Close]
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.030e-43
Identity = 101/230 (43.91%), Postives = 134/230 (58.26%), Query Frame = 1 
Query:   16 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAK 705
            R DGR   +IR L  +QG+LNRADGS RF  G TSVL +V GPA    +++EK D A +EV ++A+KGA T+ D E E  +R+T E  V +  YPR+VIS+ VQV+ DDGS+L+ AINA  +AL+DAG+ M  +  A T                   L +  L LDP+  E  T  ATV  A    +DGILT   TG L   + FA SE  R+A D+V  ++R + E K
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSI----------------LEDGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETK 221
[Close]
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.530e-43
Identity = 101/236 (42.80%), Postives = 139/236 (58.90%), Query Frame = 1 
Query:   16 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVA 723
            R DGR   +IR L  +QG+LNRADGS RF  G+TSVL +V GPA    ++ EK D A +EV +++DKGA T+ D E E  +++T +  V V  YPR+VIS+ VQV+ DDGS+L+ AINA  +AL+DAG+ M  +  A T                   L +  L LDPS +E     A+V  A    +DGILT   TG +   + FAASE  R+A D+V  ++R A E+K  ++ A
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSI----------------LDDGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNAA 229
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BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A1Y1IJQ6_KLENI (Exosome complex component RRP46 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJQ6_KLENI)

HSP 1 Score: 145 bits (367), Expect = 2.070e-39
Identity = 96/240 (40.00%), Postives = 137/240 (57.08%), Query Frame = 1 
Query:   13 LRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAV-----LAGSDG------ILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVE 699
            LR DGRT +Q+RG+  D+G+L+RADGS ++    TSVLV VYGP      K+E P++A++EV W+   G Q   + E E+ +RRTLE  V    +PR+ ISVVVQV+ DDGS+LS AINA   ALVDAG+ M G+  + T   +     A          G +HLQLDP+  E+   +ATV LA+      A S+G      ++T    G +  EE   A +  R A   ++ + R +++
Sbjct:    7 LRKDGRTFNQLRGMVCDRGLLHRADGSAKWSQDGTSVLVGVYGPKN-MPPKREDPEKAVLEVLWKPKSGIQGPEEREAEIILRRTLEAVVLAPLFPRAGISVVVQVIHDDGSLLSCAINAACAALVDAGIPMTGLLASVTIALAKRDDGAG---------GGAHLQLDPTREEQDGAQATVCLALETTPKAATSNGSVEGEAVVTSTTRGAMAIEEYLEALDRCRMASRTINAFARLSLD 236
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BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A151ZDL9_9MYCE (RNase_PH domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZDL9_9MYCE)

HSP 1 Score: 140 bits (353), Expect = 1.790e-37
Identity = 84/237 (35.44%), Postives = 135/237 (56.96%), Query Frame = 1 
Query:   16 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVAN 726
            R DGR  +QIR   ++Q +LN+ADGS RF    +SVL AVYGP +    +K+K  +++IEVS+    G  T  D E+EL ++  LE  +    +PR+ IS++ QV  DDGS++S AINA  +AL+DAG+EM G+  + T C++   S                + LDP+A EE   ++  ++A  + S  I+  K  G L  +  F +   +++ACD V  Y++ AV+ +++  ++ 
Sbjct:    5 RNDGRLNNQIRAFESEQSLLNKADGSARFTQNKSSVLAAVYGPIEVKNSRKQKILKSLIEVSFTPSVGNTTYLDKEKELLIKNALESIILTTLHPRTQISIIFQVFSDDGSIISCAINAACLALLDAGIEMQGLIGSVTLCYNHDKS----------------IYLDPTAQEEKECKSLSVIAYGSQSSQIIMNKTEGTLSMDLYFKSLPLSKEACDKVISYIKLAVKNRIMGTIST 225
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BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.710e-37
Identity = 91/224 (40.62%), Postives = 128/224 (57.14%), Query Frame = 1 
Query:   16 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLR 687
            R DGR G+++R L ++QG L RADGS R   G+++VLVAVYGP Q   ++ EK  RA ++V ++ +KG  TS + E E  +R+T E  V    +PR+VIS+VVQ L      LS AINA ++AL+DAGV M  +  +AT                   L +  L LDPS +EE  + + V  A  + SD +LT    G L  E+ FA SEA R+A ++V  + R
Sbjct:    5 RHDGRAGNELRPLASEQGALFRADGSARVAHGSSAVLVAVYGPGQAKSRRSEKLHRAALDVCFKLEKGVLTSKEKEYEQVIRQTFEPVVVTENFPRAVISIVVQHL------LSVAINAVSLALLDAGVPMTSVVTSATCGL----------------LPDGTLFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFR 206
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BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: K3WUR4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUR4_GLOUD)

HSP 1 Score: 138 bits (347), Expect = 9.640e-37
Identity = 88/224 (39.29%), Postives = 130/224 (58.04%), Query Frame = 1 
Query:   16 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLR 687
            R DGR G+++R   +DQG L RADGS R   GN++VL AVYGP Q   ++ E  ++A ++V ++ +KG  TS + E E  +R+T E  +    +PR+VIS+VVQ L      LS AINA ++AL+DAGV M+ +  +AT                   L + +L LDPS +EE  + + V  A  + +DG+LT    G L  E+ FA SEA ++A ++V  +LR
Sbjct:    7 RHDGRAGNELRPFASDQGALFRADGSARMSHGNSTVLAAVYGPGQAKNRRNEHIEKATLDVCFKLEKGQLTSKEKEYEQIIRQTFEPVIVADDFPRAVISIVVQHL------LSVAINAVSLALLDAGVPMLSIVTSATCGL----------------LPDGNLFLDPSLAEEELSTSLVTTACSSTNDGVLTSLTKGLLTEEQYFACSEACQRASESVHAFLR 208
[Close]
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.200e-36
Identity = 94/230 (40.87%), Postives = 129/230 (56.09%), Query Frame = 1 
Query:   16 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAK 705
            R DGR   +IR L  +Q +LNRADGS RF  G +SVL +V GPA    +++EK   A +EV+++A+KGA T+ D E E  +R+T E  + +  +PR+VISV VQV+ DDGS+LS AINA  +AL+DAG+ M  +  A T                   L +    LD S +E     A+V  A    +DGILT   TG L     FA SE  R+A  +V  ++R + E K
Sbjct:    9 REDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSI----------------LDDGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222
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BLAST of jgi.p|Trimin1|173453 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.250e-36
Identity = 95/230 (41.30%), Postives = 138/230 (60.00%), Query Frame = 1 
Query:   16 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAK 705
            R DGR+  +IR L  +QG+LNRADGS RF  G TSV+ +V GPA    +++E  ++A ++V ++A+KG  T+ D E EL +R+T E  + +  +PR+VIS+ VQV+ DDGS+L+ +INA  +AL+DAG+ M  + V A  C                 L +S L +DPS  E  T  ATV  A  A +  ILT   +G L  E+ FA SE  R+A D+V  ++R + E+K
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSV-VGAITCSV---------------LEDSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173453 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF16_9STRA3.960e-159100.00Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
D7FVT2_ECTSI2.440e-5446.44RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A485KL27_9STRA3.030e-4343.91Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024TBK6_9STRA4.530e-4342.80Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A1Y1IJQ6_KLENI2.070e-3940.00Exosome complex component RRP46 n=1 Tax=Klebsormid... [more]
A0A151ZDL9_9MYCE1.790e-3735.44RNase_PH domain-containing protein n=1 Tax=Tieghem... [more]
A0A5D6XHQ5_9STRA4.710e-3740.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WUR4_GLOUD9.640e-3739.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0WBP6_9STRA1.200e-3640.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZVY3_9STRA2.250e-3641.30U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:522900..526738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173453|e_gw1.102.101.1
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
KEGG ModuleM00391,M00406,M00430
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG koko:K12590,ko:K12812
EC3.6.4.13
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Preferred nameEXOSC5
Descriptionpolyadenylation-dependent snoRNA 3'-end processing
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0689@1|root,KOG1069@2759|Eukaryota
Evalue4.01e-55
Seed ortholog2880.D7FVT2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRrp46 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-01_002040.1
TranscriptId173775
TrackFilteredModels1
ProteinId173453
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173453gene_11853Tribonema minus UTEX_B_3156 geneContig_102 522900..526738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173453Trimin1|173453|e_gw1.102.101.1Tribonema minus UTEX_B_3156 polypeptideContig_102 522900..526738 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11853_4exon_11853_4Tribonema minus UTEX_B_3156 exonContig_102 522900..523034 -
exon_11853_3exon_11853_3Tribonema minus UTEX_B_3156 exonContig_102 524346..524548 -
exon_11853_2exon_11853_2Tribonema minus UTEX_B_3156 exonContig_102 525191..525370 -
exon_11853_1exon_11853_1Tribonema minus UTEX_B_3156 exonContig_102 526522..526738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11853CDS_11853Tribonema minus UTEX_B_3156 CDSContig_102 526522..526738 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11853 ID=mRNA_11853|Name=jgi.p|Trimin1|173453|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_102:522900..526738- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGAGAAGATTGCGATTCGACGGCCGTACAGGTGATCAGATCCGTGG
GCTCTTTGCAGATCAAGGCATACTCAACAGAGCCGACGGATCTGTGCGCT
TTGGAGCTGGCAATACCTCTGTGCTGGTGGCTGTCTACGGGCCAGCGCAG
CCTGCACAGCAGAAGAAGGAGAAGCCGGATCGCGCCATAATTGAAGTGAG
CTGGAGAGCAGACAAAGGCGCGCAGACGAGCGCTGACGCGGAGCGCGAGC
TGTACGTGCGGCGCACGCTGGAGGAGGCGGTCGCGGTGGCGCGCTACCCG
CGCAGCGTCATCAGCGTCGTCGTGCAGGTGCTGTGCGACGACGGGTCCGT
GCTGAGCGCCGCCATCAACGCGTGCGCGATGGCGCTGGTGGACGCAGGCG
TCGAGATGATCGGCATGCCGGTCGCCGCCACTGCGTGCTTCTCTGGCAGC
GGCAGTGCTGCCGCGGCGGCACCGGAGCAGCTTCAACATCTGGGAGAGTC
ACACTTGCAGTTAGACCCCAGCGCGTCCGAAGAAGCGACAACGCGCGCCA
CCGTCATGCTGGCAGTCCTGGCCGGCAGCGACGGCATCTTGACAATGAAG
ATGACCGGGCAGCTGGGCGCTGAGGAGCTGTTTGCGGCCTCCGAGGCCGC
GCGCAAAGCGTGCGACGCGGTCAGCGTCTACCTACGCAGGGCCGTGGAGG
CGAAGGTCTTGCGCGACGTCGCCAACTTGCAATAG
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protein sequence of jgi.p|Trimin1|173453

>Trimin1|173453|e_gw1.102.101.1 ID=Trimin1|173453|e_gw1.102.101.1|Name=jgi.p|Trimin1|173453|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp
MRRRLRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQ
PAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYP
RSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGS
GSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMK
MTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ*
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mRNA from alignment at Contig_102:522900..526738-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11853 ID=mRNA_11853|Name=jgi.p|Trimin1|173453|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3839bp|location=Sequence derived from alignment at Contig_102:522900..526738- (Tribonema minus UTEX_B_3156 )
ATGCGGAGAAGATTGCGATTCGACGGCCGTACAGGTGATCAGATCCGTGG
GCTCTTTGCAGATCAAGGCATACTCAACAGAGCCGACGGATCTGTGCGCT
TTGGAGCTGGCAATACCTCTGTGCTGGTGGCTGTCTACGGGCCAGCGCAG
CCTGCACAGCAGAAGAAGGAGAAGCCGGATCGCGCCATAATTGAAGTGAG
CTGGAGAGCAGACAAAGGTGAGCAGTGACTTACCAGTTGAAGCAGCAGCA
AATGGCTTCGACTTGACAGCTGCACAATTTGCGAGCGTCAGCGCAGCGAA
TGTGATTGATGCTTTCGCTTTTGTGCATGGATGCATTACATGTTGAACTC
GTCATAATTTACGAGCCCAAGAGCAAGTATGCAGTATTTATAAAGCACCG
TGCTCATGTTCTGGCATGTGGCCAAAATGATTGTTATCTCCATAAGCCCT
CAGTCGCTAATGTATCTCAAATTAGACGGACCCCCTCAAATGGTAGGGGT
CATCGATAGCTTACAGCATATTGATGTGGTGCATCAACTAGGCCTGCTGA
CAGCACAGCACTGTTCGTACAACAAACGCGGAGTATGCTGCGTATGTCGG
GGGCGCGGTGTTATGCTTCATGACGGGGGGGAGCAAAACGATCACATCAG
CAAGTTGAACTTGTAGGCAGCATGGCAGGCGGAGGGTAACATGAGCAGCT
TACTGCACACAGAAGCGCAGGCAGCCGCAGCGGCTGCTGCTGCTGATACT
GCTGTAAAACAGTCCAATTAGGAAGTGATTGATGCTGGCGCAGGGCCGGC
ATGTGGTCTGCGTCTCTACGCACCTGCCGTACGCTATGCCACGGTTGCCC
GCCGCAACTCGCGTACACCTGTGCAGTCGCGCAGACGAGCACTAACGGCG
TATGGCTTATATTCACACGCCTGTCTTGTTTACATGCACATGTTGCAGGT
GTCGCTTGATGAAGACTATGGCACTACATGCGTTCCGACATGATTTAAAC
TACACCTGCCATGGGCTATTTGCCGTGCCGGGCCTCTGCAACATGCGCAC
CACTCGTCAGGTGTGCACATGCGTGCCGGTAATGGAGTGTGAGCGGCGCA
TGCTGGTTGTTATGCTCATGGTACCGGTATTGCCTGGGACAGGGAACACT
TGGGTAGGGGCCTTCGCCTGATCCCCCCCCCTTCCCGTGCTGCGTCGCTC
CCCATCAGGCGCACAGCCGAGCGCCGACGCGGAGCGCGAGCTGTACGTGC
GCCACACACTGATCTGTACATATATGGTACACATGCCATCGTATGTGTAC
TTCAAAAGTATAGGTATGGCACATGATAGCTTCGCCTGACACGCCCCCCC
CCAAACGCTCTCCATCAGGCGCGCAGACGAGCGCTGACGCGGAGCGCGAG
CTGTACGTGCGGCGCACGCTGGAGGAGGCGGTCGCGGTGGCGCGCTACCC
GCGCAGCGTCATCAGCGTCGTCGTGCAGGTGCTGTGCGACGACGGGTCCG
TGCTGAGCGCCGCCATCAACGCGTGCGCGATGGCGCTGGTGGACGCAGGT
GCGGACGCGGAGCGTGGAGCGTTGCTGCTGCTGCAGTTCTCGCCAACGCG
GCACCGTGCCTGGTGTGCGTGTGCGACTGAGTGCCGGCATTTGGTGCCCA
GCACGCCCGCGAGCTGCCTCTGCGCCAAGGAAGCGGACGTTGCTGCGGAA
GCGGCGGCCAGCACCGTCGAATGCGCAGCGCGCGTGTCGGGAGGGTCGCA
TTTCGCGCGCTGCGTGTGCGCGTGCGTCGCCACGCTGCAGGCGTTGCATA
ACAGCAGCAGTGCTCGGCATCCACTGCTGGAGTGTCACTGCCGAGTCGCC
GAATCGCCGCACATGGCATATCATGTGCACATCTGATGCCACCGCCCCCC
AGCAGAGAGGGTTAGGGTTAGGGTTGGCAGAACTAGGGTTAGGTTAGCAT
AGCCCTGACCCTGACGTTTAGCCTACGCACTGACTGTCATTAGATGGAGG
GGAGCTCAGCATGTTTGAAGTTTGCCCATGGCAAGCAGTGACGTGCCACC
TCAGACAGCCGCTTTTGTTGGCGCGCCAGCGGCGGCGAGCCCGGTCTTGC
GTCCCCAGAATTTTCCTGAAATTTCGTGTCTCTGACTCATGCGTCGCCAT
GCGCCATCTGCTTGCGCCACCGTCGCCGTCGCCGCCGCAGGCGTCGAGAT
GATCGGCATGCCGGTCGCCGCCACTGCGTGCTTCTCTGGCAGCGGCAGTG
CTGCCGCGGCGGCACCGGAGCAGCTTCAACATCTGGGAGAGTCACACTTG
CAGTTAGACCCCAGCGCGTCCGAAGAAGCGACAACGCGCGCCACCGTCAT
GCTGGCAGTCCTGGCCGGCAGCGACGGCATCTTGACAATGAAGGTAATTG
ATTTGATTATATACTACTCGCCTTCTTCAATCTTTACACATCGACAACAG
AAAAAGTGCGGATAGCTTTCAAGTGCCCATATCAAAACCATGGTGACCAT
GACTTGACAACACAACGCGGCGCTGGTTCTTGTGTTCTCTTGAAAGGTCA
ACCATGTCACTCAGCGATGCTCGGCATGTATGTTGAGGTCCTCCATACTG
AGTAGCTCACGTCAACAAATACGATGGTCAACGTCCAGCAGCAGGAGTAG
ATCAGGTGCAAATTCTTGTCGCGTGCGTCACAGCAGCGCTCAGCATACGT
GCTGAGTGTTGGGCTCATTCTGAGTTGGTGGTCGGCGAACAATCATGAAC
ATCAGCCTCAGGACTTGATCAAGGCAGGTCGTTTGATGTGCTATTCACGA
ATTGATGGAACTCATGCGAGGCCACCACATGAGCGTTTGTGGTCTGGCAG
CAAATGTGCATTTGTTGTACGTACCCTGCGGTGCAGCTTTGCAGCCATCA
AATGAGAAACACAAGGGCGATTGTGTCGGGCATCCAACGCCAGGTGGAGT
GCTCGAGCACTGCCATCATGTCAATTAGCCCTGGAGGTCGGATTGAGCGC
TCCTCCATCAGTTGCTGTCAGGTTGTCCGGTGCAAACGACAGCACTGCCT
CCAGCGCCCCTGACCGCTGCAGCTTTCCCCTTGCAAACCTGCGCTGCACA
TCACCGGGCGGGGCAGCAGCAGATAGCTCCGGAAACCAGTGCTGCGCATG
CATTGCCCCGCCTGTCGAGCTTCGCGGCAGCGCACTCTGCGTGCCGACCT
TCGTCGAGACGGATAGCATCTTAGTGACCCTCGCAAAAGTCACCTCGAGT
GCGCGTCGCACACTGCTGCTGGTGGTATCACCCACATATGCTTGCGCGTC
ATGTTTGACCCTCATCGAGTCGGTCCAAAGAAGTACATATCGAGATGCCA
TTTGGCGGCGGCGGCGTTTGAGTGGTTGTCATTGTGACACTTTCAGACTG
TCACGCGGCATGTAGATCCCGTACAGCAAGCTTAGACACCATCCATCTGG
GCTGTTTCGCGCCCTGAGCGAGAATTGATAAAAAGTACGTATCGCTAACT
GCTGCTGCTGCTCGCTTGTATGCGCTTCTCATGTCATGTGTGAGTCATTG
CGTAGAGTCACTCCAAAGCAGTACGTATCGCTCACTGCTGCTACTGCTCG
CTTGTGTTAGCGCGCCGCGTGTGGGTCGTTACCCGCAGGTGCCTTCCATC
AAGAACCGTCGTATCACTCACATTCGCTTGCGCGTCGTGCGTGAGTCGTT
GCAGATGACCGGGCAGCTGGGCGCTGAGGAGCTGTTTGCGGCCTCCGAGG
CCGCGCGCAAAGCGTGCGACGCGGTCAGCGTCTACCTACGCAGGGCCGTG
GAGGCGAAGGTCTTGCGCGACGTCGCCAACTTGCAATAG
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Coding sequence (CDS) from alignment at Contig_102:522900..526738-

>mRNA_11853 ID=mRNA_11853|Name=jgi.p|Trimin1|173453|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_102:522900..526738- (Tribonema minus UTEX_B_3156 )
ATGCGGAGAAGATTGCGATTCGACGGCCGTACAGGTGATCAGATCCGTGG
GCTCTTTGCAGATCAAGGCATACTCAACAGAGCCGACGGATCTGTGCGCT
TTGGAGCTGGCAATACCTCTGTGCTGGTGGCTGTCTACGGGCCAGCGCAG
CCTGCACAGCAGAAGAAGGAGAAGCCGGATCGCGCCATAATTGAAGTGAG
CTGGAGAGCAGACAAAGGCGCGCAGACGAGCGCTGACGCGGAGCGCGAGC
TGTACGTGCGGCGCACGCTGGAGGAGGCGGTCGCGGTGGCGCGCTACCCG
CGCAGCGTCATCAGCGTCGTCGTGCAGGTGCTGTGCGACGACGGGTCCGT
GCTGAGCGCCGCCATCAACGCGTGCGCGATGGCGCTGGTGGACGCAGGCG
TCGAGATGATCGGCATGCCGGTCGCCGCCACTGCGTGCTTCTCTGGCAGC
GGCAGTGCTGCCGCGGCGGCACCGGAGCAGCTTCAACATCTGGGAGAGTC
ACACTTGCAGTTAGACCCCAGCGCGTCCGAAGAAGCGACAACGCGCGCCA
CCGTCATGCTGGCAGTCCTGGCCGGCAGCGACGGCATCTTGACAATGAAG
ATGACCGGGCAGCTGGGCGCTGAGGAGCTGTTTGCGGCCTCCGAGGCCGC
GCGCAAAGCGTGCGACGCGGTCAGCGTCTACCTACGCAGGGCCGTGGAGG
CGAAGGTCTTGCGCGACGTCGCCAACTTGCAATAG
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