Trimin1|169225|e_gw1.62.199.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|169225
Unique NameTrimin1|169225|e_gw1.62.199.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length155
Homology
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 291 bits (746), Expect = 1.360e-99
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MRQRGTALAGAALRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154
            MRQRGTALAGAALRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV
Sbjct:    1 MRQRGTALAGAALRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 167 bits (424), Expect = 9.240e-51
Identity = 86/135 (63.70%), Postives = 104/135 (77.04%), Query Frame = 0
Query:   19 ATAGSTRILS-DYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTA 152
            A A S R+ S  Y E Q + GRP+SPHVT YRFP+ AISSITNR+TGV LVGGLYGIGAL+LVGVD Q +M+++ ++ +A   K+VVTFPLIYHY  AARHTIWDF PETV N SV +SS ++F AAG L+L  A
Sbjct:    3 AQAASQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAA 137          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 4.230e-45
Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 0
Query:   23 STRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154
            S +    Y  RQ +TGRPVSPHVT Y FP  A+SSI NRVTGV LV GLYGI    LVG D  GLM+ LG + V P  K+ V+FPL+YHYLGA RHT+WD+ PET+  A VA++SY L G +G ++L  A V
Sbjct:   45 SDKEKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.560e-38
Identity = 70/116 (60.34%), Postives = 83/116 (71.55%), Query Frame = 0
Query:   30 YIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAG 145
            Y  RQ KTGRPVSPHVT Y FP VAISSI+ RVTG  L  GL GIGALALVGVD   LM+ +G +A+ PLAK  V++ L+YH+ GAARH +WD  PE + N  V Q+S  + GAAG
Sbjct:   55 YSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAG 170          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A2D4BV84_PYTIN (Transmembrane protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV84_PYTIN)

HSP 1 Score: 128 bits (321), Expect = 7.820e-35
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 0
Query:   30 YIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLM--AMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 149
            Y ERQ + GRPVSPHVT YRFP+ A+SS+TNR T VGL  G      LA VGVD+  L+  A       AP++K  + FP+ YH L AARH +WD KPE +NN    +SSY +FGAAG ++L
Sbjct:   28 YTERQARLGRPVSPHVTIYRFPITAVSSVTNRFTSVGLTAGFAAASGLAAVGVDIPSLIYAAQGAIPGFAPISKFFIAFPISYHSLAAARHVLWDAKPELINNIDGPKSSYAVFGAAGLISL 149          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.300e-33
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 0
Query:   23 STRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154
            ST     Y ERQ +TGRPVSPHVT Y+FP+ A++SI+ RVTG  L  GL GI  LAL G DV  LM+ LG + V   AK++  FPLI+HY    RH  WD  P  +NN  VA++SYIL G+   ++L++  V
Sbjct:   41 STASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISLVSGFV 172          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: W4GL90_9STRA (Succinate dehydrogenase, cytochrome b556 subunit n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GL90_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.510e-32
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 0
Query:   25 RILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETA--VAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154
            R+LS Y ERQ + GRPVSPHV  Y FP+ A+SSITNRVTG  L GG   +GAL+++G DV  L+    E     AP++K VV FP+ YH+L  AR +IWD  P+ ++    A +SY LFG A  L+L  A +
Sbjct:   22 RLLS-YTERQARLGRPVSPHVEIYAFPITALSSITNRVTGTALSGGFAAVGALSVIGADVPSLIYSAQEIIPFFAPVSKFVVAFPITYHFLCGARQSIWDNNPDLLSPPQAAPTSYALFGGAAVLSLGAAAI 152          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A6G0WI43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WI43_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.560e-32
Identity = 63/130 (48.46%), Postives = 80/130 (61.54%), Query Frame = 0
Query:   27 LSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETA--VAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154
            L  Y ERQ + GRPVSPHV  Y FPV A++SITNRVTGV L GG     ALA VG DV  L+    E      P++K+VV FP+ YH+L  ARH  W+  P+ +  + +A SSY +FG A  L+L  A +
Sbjct:   23 LVSYTERQARLGRPVSPHVEIYAFPVTALASITNRVTGVALSGGFAAAAALAAVGADVPALIHTAQEVIPFFTPVSKIVVAFPITYHFLNGARHAFWEQSPDVLEVSKIAPSSYAVFGGAAALSLGAAAI 152          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A8K1CGD2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGD2_PYTOL)

HSP 1 Score: 121 bits (303), Expect = 4.600e-32
Identity = 64/133 (48.12%), Postives = 82/133 (61.65%), Query Frame = 0
Query:   19 ATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGET--AVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 149
            ATA  +     Y ERQ + GRPVSP VT Y+FP+ A+SSITNR TGVGL  G     ALA VGVD+  ++    +     AP++K +V FP+ YH   AARH +WD  PE +N     +SSY +FGAA  L+L
Sbjct:   20 ATASLSTSAPTYTERQARLGRPVSPAVTIYKFPITALSSITNRATGVGLAAGFTAASALAAVGVDLPSVIYAAQDVIPGFAPISKFLVAFPITYHSFAAARHVVWDKNPELINKIDGPKSSYAIFGAATVLSL 152          
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A8J2SI31_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI31_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.630e-32
Identity = 73/144 (50.69%), Postives = 86/144 (59.72%), Query Frame = 0
Query:   13 LRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETV-NNASVAQSSYILFG----AAGGLTLLT 151
            LR Q+ A +        Y ERQ K GRP+SPHVT Y FP VAISSIT RVTGV L  G+ G+ A +L GVD    MA L         K +V FPL YHY GA RHT+WD KPET+ NN    +SSY++ G    AA GL  L+
Sbjct:   14 LRAQSAAFSAIPTPRPKYTERQEKLGRPMSPHVTTYAFPAVAISSITQRVTGVLLSVGVGGVAAGSLAGVD----MAALATAVSCYPVKFIVAFPLTYHYAGALRHTLWDRKPETMLNNKDAEKSSYLVMGGSTLAAAGLAALS 153          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMP1_9STRA1.360e-99100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCH7_9STRA9.240e-5163.70Transmembrane subunit of succinate dehydrogenase/F... [more]
D8LD41_ECTSI4.230e-4556.82SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A7S1XVJ2_9STRA8.560e-3860.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D4BV84_PYTIN7.820e-3552.46Transmembrane protein, putative n=1 Tax=Pythium in... [more]
W7TK90_9STRA2.300e-3350.00Succinate dehydrogenase cytochrome b subunit n=2 T... [more]
W4GL90_9STRA2.510e-3249.24Succinate dehydrogenase, cytochrome b556 subunit n... [more]
A0A6G0WI43_9STRA3.560e-3248.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1CGD2_PYTOL4.600e-3248.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J2SI31_9STRA4.630e-3250.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10Fumarate reductase/succinate dehydrogenase, transmembrane subunitcoord: 21..154
e-value: 4.2E-29
score: 103.4
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 34..152
IPR014314Succinate dehydrogenase, cytochrome b556 subunitTIGRFAMTIGR02970TIGR02970coord: 39..151
e-value: 1.1E-15
score: 55.8
IPR014314Succinate dehydrogenase, cytochrome b556 subunitPANTHERPTHR10978SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNITcoord: 14..153
IPR000701Succinate dehydrogenase/fumarate reductase type B, transmembrane subunitPFAMPF01127Sdh_cytcoord: 38..142
e-value: 3.8E-14
score: 52.8
NoneNo IPR availablePIRSRPIRSR000178-1PIRSR000178-1coord: 39..144
e-value: 2.1E-20
score: 70.9
NoneNo IPR availablePANTHERPTHR10978:SF5SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIALcoord: 14..153
NoneNo IPR availableCDDcd03499SQR_TypeC_SdhCcoord: 39..153
e-value: 4.21069E-15
score: 65.2487

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:403422..405107 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169225mRNA_6515Tribonema minus UTEX_B_3156 mRNAContig_62 403422..405107 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|169225|e_gw1.62.199.1 ID=Trimin1|169225|e_gw1.62.199.1|Name=jgi.p|Trimin1|169225|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
MRQRGTALAGAALRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRF
PVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLA
KMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLL
TAVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034804SQR/QFR_C/D
IPR014314Succ_DH_cytb556
IPR000701SuccDH_FuR_B_TM-su