mRNA_6515 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA) HSP 1 Score: 291 bits (746), Expect = 1.360e-99 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 Query: 1 MRQRGTALAGAALRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 462 MRQRGTALAGAALRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV Sbjct: 1 MRQRGTALAGAALRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA) HSP 1 Score: 167 bits (424), Expect = 9.240e-51 Identity = 86/135 (63.70%), Postives = 104/135 (77.04%), Query Frame = 1 Query: 55 ATAGSTRILS-DYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTA 456 A A S R+ S Y E Q + GRP+SPHVT YRFP+ AISSITNR+TGV LVGGLYGIGAL+LVGVD Q +M+++ ++ +A K+VVTFPLIYHY AARHTIWDF PETV N SV +SS ++F AAG L+L A Sbjct: 3 AQAASQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAA 137
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI) HSP 1 Score: 154 bits (390), Expect = 4.230e-45 Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 1 Query: 67 STRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 462 S + Y RQ +TGRPVSPHVT Y FP A+SSI NRVTGV LV GLYGI LVG D GLM+ LG + V P K+ V+FPL+YHYLGA RHT+WD+ PET+ A VA++SY L G +G ++L A V Sbjct: 45 SDKEKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA) HSP 1 Score: 136 bits (342), Expect = 8.560e-38 Identity = 70/116 (60.34%), Postives = 83/116 (71.55%), Query Frame = 1 Query: 88 YIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAG 435 Y RQ KTGRPVSPHVT Y FP VAISSI+ RVTG L GL GIGALALVGVD LM+ +G +A+ PLAK V++ L+YH+ GAARH +WD PE + N V Q+S + GAAG Sbjct: 55 YSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAG 170
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A2D4BV84_PYTIN (Transmembrane protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV84_PYTIN) HSP 1 Score: 128 bits (321), Expect = 7.820e-35 Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1 Query: 88 YIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLM--AMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 447 Y ERQ + GRPVSPHVT YRFP+ A+SS+TNR T VGL G LA VGVD+ L+ A AP++K + FP+ YH L AARH +WD KPE +NN +SSY +FGAAG ++L Sbjct: 28 YTERQARLGRPVSPHVTIYRFPITAVSSVTNRFTSVGLTAGFAAASGLAAVGVDIPSLIYAAQGAIPGFAPISKFFIAFPISYHSLAAARHVLWDAKPELINNIDGPKSSYAVFGAAGLISL 149
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.300e-33 Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 67 STRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 462 ST Y ERQ +TGRPVSPHVT Y+FP+ A++SI+ RVTG L GL GI LAL G DV LM+ LG + V AK++ FPLI+HY RH WD P +NN VA++SYIL G+ ++L++ V Sbjct: 41 STASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISLVSGFV 172
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: W4GL90_9STRA (Succinate dehydrogenase, cytochrome b556 subunit n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GL90_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.510e-32 Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 73 RILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETA--VAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 462 R+LS Y ERQ + GRPVSPHV Y FP+ A+SSITNRVTG L GG +GAL+++G DV L+ E AP++K VV FP+ YH+L AR +IWD P+ ++ A +SY LFG A L+L A + Sbjct: 22 RLLS-YTERQARLGRPVSPHVEIYAFPITALSSITNRVTGTALSGGFAAVGALSVIGADVPSLIYSAQEIIPFFAPVSKFVVAFPITYHFLCGARQSIWDNNPDLLSPPQAAPTSYALFGGAAVLSLGAAAI 152
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A6G0WI43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WI43_9STRA) HSP 1 Score: 121 bits (303), Expect = 3.560e-32 Identity = 63/130 (48.46%), Postives = 80/130 (61.54%), Query Frame = 1 Query: 79 LSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETA--VAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 462 L Y ERQ + GRPVSPHV Y FPV A++SITNRVTGV L GG ALA VG DV L+ E P++K+VV FP+ YH+L ARH W+ P+ + + +A SSY +FG A L+L A + Sbjct: 23 LVSYTERQARLGRPVSPHVEIYAFPVTALASITNRVTGVALSGGFAAAAALAAVGADVPALIHTAQEVIPFFTPVSKIVVAFPITYHFLNGARHAFWEQSPDVLEVSKIAPSSYAVFGGAAALSLGAAAI 152
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A8K1CGD2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGD2_PYTOL) HSP 1 Score: 121 bits (303), Expect = 4.600e-32 Identity = 64/133 (48.12%), Postives = 82/133 (61.65%), Query Frame = 1 Query: 55 ATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGET--AVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 447 ATA + Y ERQ + GRPVSP VT Y+FP+ A+SSITNR TGVGL G ALA VGVD+ ++ + AP++K +V FP+ YH AARH +WD PE +N +SSY +FGAA L+L Sbjct: 20 ATASLSTSAPTYTERQARLGRPVSPAVTIYKFPITALSSITNRATGVGLAAGFTAASALAAVGVDLPSVIYAAQDVIPGFAPISKFLVAFPITYHSFAAARHVVWDKNPELINKIDGPKSSYAIFGAATVLSL 152
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Match: A0A8J2SI31_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI31_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.630e-32 Identity = 73/144 (50.69%), Postives = 86/144 (59.72%), Query Frame = 1 Query: 37 LRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETV-NNASVAQSSYILFG----AAGGLTLLT 453 LR Q+ A + Y ERQ K GRP+SPHVT Y FP VAISSIT RVTGV L G+ G+ A +L GVD MA L K +V FPL YHY GA RHT+WD KPET+ NN +SSY++ G AA GL L+ Sbjct: 14 LRAQSAAFSAIPTPRPKYTERQEKLGRPMSPHVTTYAFPAVAISSITQRVTGVLLSVGVGGVAAGSLAGVD----MAALATAVSCYPVKFIVAFPLTYHYAGALRHTLWDRKPETMLNNKDAEKSSYLVMGGSTLAAAGLAALS 153 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169225 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6515 ID=mRNA_6515|Name=jgi.p|Trimin1|169225|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_62:403422..405107- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGGCAGAGGGGCACGGCCCTCGCAGGCGCCGCGCTCCGCAAACAGGCback to top protein sequence of jgi.p|Trimin1|169225 >Trimin1|169225|e_gw1.62.199.1 ID=Trimin1|169225|e_gw1.62.199.1|Name=jgi.p|Trimin1|169225|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp MRQRGTALAGAALRKQAGATAGSTRILSDYIERQNKTGRPVSPHVTAYRFback to top mRNA from alignment at Contig_62:403422..405107- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6515 ID=mRNA_6515|Name=jgi.p|Trimin1|169225|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1686bp|location=Sequence derived from alignment at Contig_62:403422..405107- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_62:403422..405107- >mRNA_6515 ID=mRNA_6515|Name=jgi.p|Trimin1|169225|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_62:403422..405107- (Tribonema minus UTEX_B_3156 )back to top |