Trimin1|160023|e_gw1.11.108.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|160023
Unique NameTrimin1|160023|e_gw1.11.108.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length54
Homology
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BLAST of jgi.p|Trimin1|160023 vs. uniprot
Match: A0A836CME9_9STRA (TFIIS-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.590e-33
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 
Query:    1 DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHEWLG 53
            DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHEWLG
Sbjct:    1 DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHEWLG 53
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BLAST of jgi.p|Trimin1|160023 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-15
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 0 
Query:    1 DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHEWLG 53
            D  +DPTLQRS  + C+RC+  EAVFFQAD + +++SLSL+FVCTHCG +W+G
Sbjct:   59 DVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTHCGKKWVG 111
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160023 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CME9_9STRA9.590e-33100.00TFIIS-type domain-containing protein n=1 Tax=Tribo... [more]
A0A835YYP5_9STRA1.300e-1560.38DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 14..53
e-value: 9.8E-4
score: 24.3
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 15..51
e-value: 1.6E-7
score: 31.0
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 12..52
score: 8.995786
NoneNo IPR availableGENE3D2.20.25.10coord: 1..53
e-value: 8.8E-18
score: 65.5
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 2..51
IPR034012Pol II subunit B9, C-terminal zinc ribbonCDDcd10508Zn-ribbon_RPB9coord: 4..51
e-value: 3.00777E-18
score: 67.6634

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:1018990..1019151 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160023mRNA_4802Tribonema minus UTEX_B_3156 mRNAContig_11 1018990..1019151 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|160023|e_gw1.11.108.1 ID=Trimin1|160023|e_gw1.11.108.1|Name=jgi.p|Trimin1|160023|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=54bp
DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHE
WLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR034012Zn_ribbon_RPB9_C