mRNA_4802 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160023
Unique NamemRNA_4802
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160023 vs. uniprot
Match: A0A836CME9_9STRA (TFIIS-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.590e-33
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHEWLG 159
            DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHEWLG
Sbjct:    1 DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHEWLG 53
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BLAST of jgi.p|Trimin1|160023 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-15
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHEWLG 159
            D  +DPTLQRS  + C+RC+  EAVFFQAD + +++SLSL+FVCTHCG +W+G
Sbjct:   59 DVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTHCGKKWVG 111
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160023 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CME9_9STRA9.590e-33100.00TFIIS-type domain-containing protein n=1 Tax=Tribo... [more]
A0A835YYP5_9STRA1.300e-1560.38DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:1018990..1019151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160023|e_gw1.11.108.1
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
KEGG rclassRC02795
KEGG ReactionR00435,R00441,R00442,R00443
KEGG ModuleM00180
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG koko:K03017
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0001192,GO:0001193,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Preferred namePOLR2I
Descriptionmaintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1594@1|root,KOG2691@2759|Eukaryota
Evalue3.12e-12
Seed ortholog2880.D8LE56
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId160345
TrackFilteredModels1
ProteinId160023
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160023gene_4802Tribonema minus UTEX_B_3156 geneContig_11 1018990..1019151 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4802_1exon_4802_1Tribonema minus UTEX_B_3156 exonContig_11 1018990..1019151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4802CDS_4802Tribonema minus UTEX_B_3156 CDSContig_11 1018990..1019151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160023Trimin1|160023|e_gw1.11.108.1Tribonema minus UTEX_B_3156 polypeptideContig_11 1018990..1019151 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4802 ID=mRNA_4802|Name=jgi.p|Trimin1|160023|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=162bp|location=Sequence derived from alignment at Contig_11:1018990..1019151- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACTTCAAGCACGACCCCACGCTGCAGCGCTCCGACAGGCGCGCGTGCGA
GCGCTGCCACAACCGCGAGGCTGTCTTCTTCCAGGCAGACAAGGCGCGCG
AGGCGGCATCGCTCAGCCTCGTGTTCGTCTGCACGCACTGCGGCCACGAG
TGGCTCGGCTAG
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protein sequence of jgi.p|Trimin1|160023

>Trimin1|160023|e_gw1.11.108.1 ID=Trimin1|160023|e_gw1.11.108.1|Name=jgi.p|Trimin1|160023|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=54bp
DFKHDPTLQRSDRRACERCHNREAVFFQADKAREAASLSLVFVCTHCGHE
WLG*
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mRNA from alignment at Contig_11:1018990..1019151-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4802 ID=mRNA_4802|Name=jgi.p|Trimin1|160023|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=162bp|location=Sequence derived from alignment at Contig_11:1018990..1019151- (Tribonema minus UTEX_B_3156 )
GACTTCAAGCACGACCCCACGCTGCAGCGCTCCGACAGGCGCGCGTGCGA
GCGCTGCCACAACCGCGAGGCTGTCTTCTTCCAGGCAGACAAGGCGCGCG
AGGCGGCATCGCTCAGCCTCGTGTTCGTCTGCACGCACTGCGGCCACGAG
TGGCTCGGCTAG
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Coding sequence (CDS) from alignment at Contig_11:1018990..1019151-

>mRNA_4802 ID=mRNA_4802|Name=jgi.p|Trimin1|160023|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=162bp|location=Sequence derived from alignment at Contig_11:1018990..1019151- (Tribonema minus UTEX_B_3156 )
GACTTCAAGCACGACCCCACGCTGCAGCGCTCCGACAGGCGCGCGTGCGA
GCGCTGCCACAACCGCGAGGCTGTCTTCTTCCAGGCAGACAAGGCGCGCG
AGGCGGCATCGCTCAGCCTCGTGTTCGTCTGCACGCACTGCGGCCACGAG
TGGCTCGGCTAG
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