Trimin1|149860|gw1.85.60.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|149860
Unique NameTrimin1|149860|gw1.85.60.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length123
Homology
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A836C964_9STRA (Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C964_9STRA)

HSP 1 Score: 259 bits (661), Expect = 1.180e-87
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
            LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR
Sbjct:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835YK87_9STRA (Homeodomain-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK87_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.110e-79
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 0
Query:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
            +VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQ  CRERWTHHLDPAV+KD F  EEDWLI+STQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR
Sbjct:   48 VVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQ--CRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 168          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835Z4C0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C0_9STRA)

HSP 1 Score: 226 bits (576), Expect = 3.360e-74
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 0
Query:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
            +VGTKKAVQCMQRW+RSLRPDLKKGRWT EEDALLIELITQG KTW ELSNRI GRSAKQ  CRERWTHHL+PAV+KD FT EEDW IVSTQAA+GNRWSHIAAMLPGRTENAVK+RWKTCHR
Sbjct:   37 VVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQ--CRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 157          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.210e-48
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 0
Query:    2 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRW 118
            VGTK A QCMQRWRR+L+PD++KGRW  EEDALL++L+T+G  +W E +  I GRSAKQ  CRERW HHLDPAVS+  FT  ED ++V+ QAA GN W+ IAA LPGRTEN VK RW
Sbjct:   28 VGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQ--CRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 142          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.390e-40
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0
Query:    2 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
            VG++  VQC+QRW++ LRP L KG+W  EEDA L++L T   K W  LS  ++GR++KQ  CRERW HHLDP+++K ++T EED +I+ TQA +GNRWS IAA LPGRTEN++K+R K   R
Sbjct:  136 VGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQ--CRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIRCKALQR 255          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 139 bits (350), Expect = 1.150e-39
Identity = 63/113 (55.75%), Postives = 85/113 (75.22%), Query Frame = 0
Query:    8 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 120
             QC+QRW + L P L KG W  +ED LL EL+ +GRK W +++ RI GR++KQ  CRERW +HLDP++ +  ++ EED +I+  QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct:   45 TQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 155          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.170e-39
Identity = 66/122 (54.10%), Postives = 91/122 (74.59%), Query Frame = 0
Query:    2 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
            VGT+  VQC+QRW++ L+P L KG+W+  EDA L++L+ +G K W +L+ ++ GR++KQ  CRERW+HHLDP+V K  +T EED  I+  Q+ +GN+WS IA  LPGRTENAVK+RWK   R
Sbjct:   57 VGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFKNWGQLAAQMPGRTSKQ--CRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRWKALDR 176          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 139 bits (351), Expect = 6.520e-39
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 0
Query:    8 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 120
             QC+QRW + L P L KG W  EED LL EL+ +GRK W +++ RI GR++KQ  CRERW +HLDP++ +  ++ EED +I+  QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct:  118 TQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A2P4Y3D9_9STRA (Myb-like DNA-binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3D9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.720e-38
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 0
Query:    8 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 120
             QC+QRW + L P L KG W  +ED LL EL+ +GRK W +++ RI GR++KQ  CRERW +HLDP++ +  +T EED +I+  QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct:  127 TQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIVRGEYTQEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 237          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 4.240e-38
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0
Query:    2 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123
            VG++  VQC+QRW++ LRP L KG+W  EEDA L++L T   K W  LS  ++GR++KQ  CRERW HHLDP+++K ++T EED +I+ TQA +GNRWS IAA LPGRTEN++K+R K   R
Sbjct:  143 VGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQ--CRERWCHHLDPSINKGAYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIRCKALQR 262          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C964_9STRA1.180e-87100.00Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tr... [more]
A0A835YK87_9STRA1.110e-7993.50Homeodomain-like protein n=2 Tax=Tribonema minus T... [more]
A0A835Z4C0_9STRA3.360e-7487.80Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835Z2Q0_9STRA1.210e-4864.96Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
D8LM16_ECTSI3.390e-4055.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H3G911_PHYRM1.150e-3955.75Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2UU49_9STRA2.170e-3954.10Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D0NJN5_PHYIT6.520e-3956.64Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
A0A2P4Y3D9_9STRA1.720e-3856.64Myb-like DNA-binding protein (Fragment) n=1 Tax=Ph... [more]
A0A6H5KJU6_9PHAE4.240e-3855.74MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 23..73
e-value: 3.7E-5
score: 33.2
coord: 76..123
e-value: 8.6E-4
score: 28.6
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 19..71
score: 9.674538
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 72..122
score: 8.188149
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 26..71
e-value: 6.94119E-7
score: 41.0218
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 79..120
e-value: 3.72358E-5
score: 36.7846
NoneNo IPR availableGENE3D1.10.10.60coord: 79..121
e-value: 2.0E-14
score: 55.2
NoneNo IPR availablePFAMPF13921Myb_DNA-bind_6coord: 27..85
e-value: 3.1E-10
score: 40.1
NoneNo IPR availableGENE3D1.10.10.60coord: 21..76
e-value: 4.6E-15
score: 57.2
NoneNo IPR availablePANTHERPTHR45614MYB PROTEIN-RELATEDcoord: 23..120
NoneNo IPR availablePANTHERPTHR45614MYB PROTEIN-RELATEDcoord: 6..38
NoneNo IPR availablePANTHERPTHR45614:SF152SUBFAMILY NOT NAMEDcoord: 23..120
coord: 6..38
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 19..75
score: 17.844055
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 77..123
score: 15.38152
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 21..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_85contigContig_85:305605..307450 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149860mRNA_12189Tribonema minus UTEX_B_3156 mRNAContig_85 305605..307450 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|149860|gw1.85.60.1 ID=Trimin1|149860|gw1.85.60.1|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp
LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELS
NRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWS
HIAAMLPGRTENAVKVRWKTCHR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf