mRNA_12189 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149860
Unique NamemRNA_12189
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A836C964_9STRA (Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C964_9STRA)

HSP 1 Score: 259 bits (661), Expect = 1.180e-87
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
Query:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369
            LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR
Sbjct:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 123          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835YK87_9STRA (Homeodomain-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK87_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.110e-79
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 1
Query:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369
            +VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQ  CRERWTHHLDPAV+KD F  EEDWLI+STQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR
Sbjct:   48 VVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQ--CRERWTHHLDPAVNKDVFAPEEDWLIISTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 168          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835Z4C0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C0_9STRA)

HSP 1 Score: 226 bits (576), Expect = 3.360e-74
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369
            +VGTKKAVQCMQRW+RSLRPDLKKGRWT EEDALLIELITQG KTW ELSNRI GRSAKQ  CRERWTHHL+PAV+KD FT EEDW IVSTQAA+GNRWSHIAAMLPGRTENAVK+RWKTCHR
Sbjct:   37 VVGTKKAVQCMQRWKRSLRPDLKKGRWTQEEDALLIELITQGYKTWAELSNRIAGRSAKQ--CRERWTHHLNPAVNKDVFTPEEDWTIVSTQAAIGNRWSHIAAMLPGRTENAVKIRWKTCHR 157          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A835Z2Q0_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.210e-48
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    4 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRW 354
            VGTK A QCMQRWRR+L+PD++KGRW  EEDALL++L+T+G  +W E +  I GRSAKQ  CRERW HHLDPAVS+  FT  ED ++V+ QAA GN W+ IAA LPGRTEN VK RW
Sbjct:   28 VGTKTATQCMQRWRRALQPDMRKGRWRDEEDALLLDLMTRGHDSWSEFARHIPGRSAKQ--CRERWRHHLDPAVSRARFTPAEDAVVVAMQAARGNAWARIAARLPGRTENTVKTRW 142          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.390e-40
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    4 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369
            VG++  VQC+QRW++ LRP L KG+W  EEDA L++L T   K W  LS  ++GR++KQ  CRERW HHLDP+++K ++T EED +I+ TQA +GNRWS IAA LPGRTEN++K+R K   R
Sbjct:  136 VGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQ--CRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIRCKALQR 255          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 139 bits (350), Expect = 1.150e-39
Identity = 63/113 (55.75%), Postives = 85/113 (75.22%), Query Frame = 1
Query:   22 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 360
             QC+QRW + L P L KG W  +ED LL EL+ +GRK W +++ RI GR++KQ  CRERW +HLDP++ +  ++ EED +I+  QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct:   45 TQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 155          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.170e-39
Identity = 66/122 (54.10%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    4 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369
            VGT+  VQC+QRW++ L+P L KG+W+  EDA L++L+ +G K W +L+ ++ GR++KQ  CRERW+HHLDP+V K  +T EED  I+  Q+ +GN+WS IA  LPGRTENAVK+RWK   R
Sbjct:   57 VGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFKNWGQLAAQMPGRTSKQ--CRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRWKALDR 176          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 139 bits (351), Expect = 6.520e-39
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 1
Query:   22 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 360
             QC+QRW + L P L KG W  EED LL EL+ +GRK W +++ RI GR++KQ  CRERW +HLDP++ +  ++ EED +I+  QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct:  118 TQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 228          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A2P4Y3D9_9STRA (Myb-like DNA-binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3D9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.720e-38
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 1
Query:   22 VQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKT 360
             QC+QRW + L P L KG W  +ED LL EL+ +GRK W +++ RI GR++KQ  CRERW +HLDP++ +  +T EED +I+  QA +GNRWS IAAMLPGRTE+AVK+RWK+
Sbjct:  127 TQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGRKNWGQVATRIPGRTSKQ--CRERWYNHLDPSIVRGEYTQEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRWKS 237          
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 4.240e-38
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    4 VGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELSNRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWSHIAAMLPGRTENAVKVRWKTCHR 369
            VG++  VQC+QRW++ LRP L KG+W  EEDA L++L T   K W  LS  ++GR++KQ  CRERW HHLDP+++K ++T EED +I+ TQA +GNRWS IAA LPGRTEN++K+R K   R
Sbjct:  143 VGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATAPFKNWGVLSQSMSGRTSKQ--CRERWCHHLDPSINKGAYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIRCKALQR 262          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149860 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C964_9STRA1.180e-87100.00Ternary protein-Dna Complex3 (Fragment) n=1 Tax=Tr... [more]
A0A835YK87_9STRA1.110e-7993.50Homeodomain-like protein n=2 Tax=Tribonema minus T... [more]
A0A835Z4C0_9STRA3.360e-7487.80Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835Z2Q0_9STRA1.210e-4864.96Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
D8LM16_ECTSI3.390e-4055.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H3G911_PHYRM1.150e-3955.75Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2UU49_9STRA2.170e-3954.10Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D0NJN5_PHYIT6.520e-3956.64Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
A0A2P4Y3D9_9STRA1.720e-3856.64Myb-like DNA-binding protein (Fragment) n=1 Tax=Ph... [more]
A0A6H5KJU6_9PHAE4.240e-3855.74MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_85contigContig_85:305605..307450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149860|gw1.85.60.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420,ko:K09422
Preferred nameMYBL2
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue5.56e-41
Seed ortholog2880.D8LM16
Hectar predicted targeting categoryother localisation
TranscriptId150182
TrackFilteredModels1
ProteinId149860
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149860gene_12189Tribonema minus UTEX_B_3156 geneContig_85 305605..307450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149860Trimin1|149860|gw1.85.60.1Tribonema minus UTEX_B_3156 polypeptideContig_85 305605..307450 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12189_3exon_12189_3Tribonema minus UTEX_B_3156 exonContig_85 305605..305667 -
exon_12189_2exon_12189_2Tribonema minus UTEX_B_3156 exonContig_85 306849..307082 -
exon_12189_1exon_12189_1Tribonema minus UTEX_B_3156 exonContig_85 307379..307450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12189CDS_12189Tribonema minus UTEX_B_3156 CDSContig_85 307379..307450 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12189 ID=mRNA_12189|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=369bp|location=Sequence derived from alignment at Contig_85:305605..307450- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGGTAGGGACCAAGAAAGCCGTGCAATGTATGCAGAGGTGGAGGCGATC
GCTCCGACCTGACCTAAAGAAGGGACGCTGGACGCACGAGGAGGACGCTC
TGTTGATTGAGCTGATCACACAAGGGCGCAAGACATGGCCCGAGCTGTCC
AACAGGATCACTGGGCGGAGTGCGAAGCAAATTGAATGCAGAGAGAGGTG
GACGCACCATTTGGACCCTGCCGTCAGCAAGGATAGTTTTACATTGGAGG
AAGACTGGCTCATTGTTTCCACCCAGGCTGCCGTTGGGAACCGCTGGAGC
CACATTGCTGCGATGCTGCCGGGCCGAACAGAAAACGCCGTCAAAGTCAG
ATGGAAAACATGCCACAGG
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protein sequence of jgi.p|Trimin1|149860

>Trimin1|149860|gw1.85.60.1 ID=Trimin1|149860|gw1.85.60.1|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp
LVGTKKAVQCMQRWRRSLRPDLKKGRWTHEEDALLIELITQGRKTWPELS
NRITGRSAKQIECRERWTHHLDPAVSKDSFTLEEDWLIVSTQAAVGNRWS
HIAAMLPGRTENAVKVRWKTCHR
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mRNA from alignment at Contig_85:305605..307450-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12189 ID=mRNA_12189|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1846bp|location=Sequence derived from alignment at Contig_85:305605..307450- (Tribonema minus UTEX_B_3156 )
TTGGTAGGGACCAAGAAAGCCGTGCAATGTATGCAGAGGTGGAGGCGATC GCTCCGACCTGACCTAAAGAAGGTGAGGCGGCGATTATCCTAGCGCCAGG TAACGCCTGCTGCGCTGCAGAGTGTGCTTGCCAGTGCGGACATTGGCACC CCAGTGGCTTTCGACTGTGATAATCTAACTCTAGATGGTGCTGCTGCAGC ATCATCATCATCCGCTATCTACTTTAAGACTAATTGACCTCCCGACTTTC TATTTCACTACACATACTTCGAAGTATATATAATTACATACTGTGTAGTT GTTTAAGAGACTGTCTGTTTTGATGACTTCCAACCCCTCACTTACGTCCA CCTGCTCCTGCACACCAGGGACGCTGGACGCACGAGGAGGACGCTCTGTT GATTGAGCTGATCACACAAGGGCGCAAGACATGGCCCGAGCTGTCCAACA GGATCACTGGGCGGAGTGCGAAGCAAATTGAATGCAGAGAGAGGTGGACG CACCATTTGGACCCTGCCGTCAGCAAGGATAGTTTTACATTGGAGGAAGA CTGGCTCATTGTTTCCACCCAGGCTGCCGTTGGGAACCGCTGGAGCCACA TTGTGAGTCTGGATTATATTTTGTGCGTTCAAGAGCCTCTGAGACTACAA ACTAGTAACTTGCGCAACCTGAATATACTATGATAATCATGATCGTGATG ATTCATACCTAGTATTCAATAAGTGACTGAGGAGTTCCAGCAACAGTTGA ATCGCCTCATCTCAAACGCAACTTCGAACGCCCAAATGCAGTCAAGATAA TTGTCTAGAAGTAGTCCAACACTCCAGGGCAGAATAATTTTAAGTACGAA GTTGGGTTTCTGACGTGATGTCATGGTATTACTTCGATTAATTGTGTTTT TAACTTCAATTTCACCTGCTGACTACTCGCTTGTTGACGTTGATGTTGAT TCTGACGTGATGTCATACTTCAATCGTGATATTTAAACTTCAGTTTCAAG CTATTAGTAACTGCAATGGTTACCCCAAAATCAGTGCTGAACGTGCAATA TCACAGCTCAATCAACCTTGACTCCAACAAACAAGTAGTTCACACTGTCA GGCTGAGCGTGCGTGTGAGTTATGTAGGCCAACAATCTGTTGCTACTCAA CTTTTAAAACTTTAAGTTCGTGCATCTTGACTACATATAGCAAAGTGCCT CGGTTGCATTTGGGCTTTCAGGGTTGCGTTTGAAATGAGAGGTTCCAGTT ACTGTAAGTTAAAGGCTGCTGTAGCCTGACTGAGTGACTGTGCCGCATCC GTCATCATGATGAAGGTTGTATAATATTTGACATTCAGAAAATTAAGCGT GCAGTGCAGGCTAGCACATCACCTGTACCATTGCATACTATGAGCGCAGA GGCAAACGGAGGCAGCTAAAGGTGACACACACACCTTGTGGTGAAGCCCG AAGATCAACTTCAAGCTGAAGGAAGTGATATTTGATTATTATCCACAGCA AACTGTGACCTGGAACCTGCGCGTGCCGGCTCAGGTCCTGAATTGCCGCA GCGGCTGAGTCACCTGCACCGATGACCTGGAGCTGTCCTCGAACAGCACC TAAACAAAAATGCACTTCAACTACAATGACGGGGCTAACCTCAACTAGGG CATGTAACCCCAATTGTGCAATGCGCCATATTGTAACAGACATTGTTAAG CTTACAGAAGCTGAACAAACATGCCTTGAGATCTGATCTGCTGGACTGAA CACTGCGCACTGTTGCTTGCTGCCGCCTTGCAGGCTGCGATGCTGCCGGG CCGAACAGAAAACGCCGTCAAAGTCAGATGGAAAACATGCCACAGG
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Coding sequence (CDS) from alignment at Contig_85:305605..307450-

>mRNA_12189 ID=mRNA_12189|Name=jgi.p|Trimin1|149860|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=369bp|location=Sequence derived from alignment at Contig_85:305605..307450- (Tribonema minus UTEX_B_3156 )
TTGGTAGGGACCAAGAAAGCCGTGCAATGTATGCAGAGGTGGAGGCGATC
GCTCCGACCTGACCTAAAGAAGGGACGCTGGACGCACGAGGAGGACGCTC
TGTTGATTGAGCTGATCACACAAGGGCGCAAGACATGGCCCGAGCTGTCC
AACAGGATCACTGGGCGGAGTGCGAAGCAAATTGAATGCAGAGAGAGGTG
GACGCACCATTTGGACCCTGCCGTCAGCAAGGATAGTTTTACATTGGAGG
AAGACTGGCTCATTGTTTCCACCCAGGCTGCCGTTGGGAACCGCTGGAGC
CACATTGCTGCGATGCTGCCGGGCCGAACAGAAAACGCCGTCAAAGTCAG
ATGGAAAACATGCCACAGG
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