Trimin1|149423|gw1.65.81.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|149423
Unique NameTrimin1|149423|gw1.65.81.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length52
Homology
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A835YVJ7_9STRA (60S ribosomal protein L29 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.620e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK 52
            LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK
Sbjct:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK 52          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: D8LU40_ECTSI (60S ribosomal protein L29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU40_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.690e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 49
            ++QK+HTGRNA+ KDH NGIKKAP  KY S+KGMDPKFLRNQ++AKK N
Sbjct:    2 VKQKHHTGRNATFKDHVNGIKKAPNHKYKSMKGMDPKFLRNQKFAKKYN 50          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A2P6TDJ6_CHLSO (60S ribosomal protein L29 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TDJ6_CHLSO)

HSP 1 Score: 65.1 bits (157), Expect = 6.350e-13
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    4 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKK 47
            KNHT  N SAK H NGIKK  R +Y+S KGMDPKFLRNQRYAKK
Sbjct:    5 KNHTAANQSAKAHKNGIKKPQRQRYSSRKGMDPKFLRNQRYAKK 48          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A7I4A457_PHYPA (60S ribosomal protein L29 n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A457_PHYPA)

HSP 1 Score: 65.5 bits (158), Expect = 8.050e-13
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    4 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 49
            KNHT  N S K+H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:   20 KNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHN 65          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A2K1JGS4_PHYPA (60S ribosomal protein L29 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JGS4_PHYPA)

HSP 1 Score: 65.1 bits (157), Expect = 9.600e-13
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    4 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 49
            KNHT  N S K+H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:   13 KNHTAHNQSYKNHKNGIKKVKKHKYISRKGMDPKFLRNQRYAKKHN 58          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A5B8MJV1_9CHLO (60S ribosomal protein L29 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJV1_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.280e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    4 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 49
            KNHT  N S K+H NGIKK  + KY+S KGMDPKFLRNQRY KK N
Sbjct:    5 KNHTAHNQSYKNHRNGIKKQKKQKYSSTKGMDPKFLRNQRYCKKHN 50          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: V4LZQ9_EUTSA (60S ribosomal protein L29 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LZQ9_EUTSA)

HSP 1 Score: 63.9 bits (154), Expect = 2.150e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    4 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 49
            KNHT  N SAK H NGIKK  R ++ S KGMDPKFLRNQRYA+K N
Sbjct:    5 KNHTAHNQSAKAHKNGIKKPRRHRHTSTKGMDPKFLRNQRYARKHN 50          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: A0A067C325_SAPPC (60S ribosomal protein L29 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C325_SAPPC)

HSP 1 Score: 63.5 bits (153), Expect = 2.980e-12
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 49
            ++QKNHT RN + K H NGI+K  + +Y+S KG+DPKFLRNQR+AKK N
Sbjct:    2 VKQKNHTARNQTVKAHKNGIRKPHKHRYHSTKGLDPKFLRNQRFAKKYN 50          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: U9SIP6_RHIID (60S ribosomal protein L29 n=4 Tax=Glomeraceae TaxID=36751 RepID=U9SIP6_RHIID)

HSP 1 Score: 63.5 bits (153), Expect = 3.370e-12
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    4 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKK 48
            KNHT  N + K H NGIKK   ++Y SLKG+DPKFLRNQRYAKKK
Sbjct:    5 KNHTNHNQNRKAHRNGIKKPKTYRYPSLKGVDPKFLRNQRYAKKK 49          
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Match: D8TVB8_VOLCA (60S ribosomal protein L29 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TVB8_VOLCA)

HSP 1 Score: 63.2 bits (152), Expect = 3.680e-12
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    4 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 49
            KNHT  N + K H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:    5 KNHTAHNQNRKAHRNGIKKPQKHKYASRKGMDPKFLRNQRYAKKHN 50          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149423 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVJ7_9STRA1.620e-28100.0060S ribosomal protein L29 (Fragment) n=1 Tax=Tribo... [more]
D8LU40_ECTSI2.690e-1773.4760S ribosomal protein L29 n=1 Tax=Ectocarpus silic... [more]
A0A2P6TDJ6_CHLSO6.350e-1375.0060S ribosomal protein L29 n=1 Tax=Chlorella soroki... [more]
A0A7I4A457_PHYPA8.050e-1371.7460S ribosomal protein L29 n=4 Tax=Physcomitrium pa... [more]
A0A2K1JGS4_PHYPA9.600e-1371.7460S ribosomal protein L29 n=2 Tax=Physcomitrium pa... [more]
A0A5B8MJV1_9CHLO1.280e-1269.5760S ribosomal protein L29 n=1 Tax=Chloropicon prim... [more]
V4LZQ9_EUTSA2.150e-1269.5760S ribosomal protein L29 n=1 Tax=Eutrema salsugin... [more]
A0A067C325_SAPPC2.980e-1261.2260S ribosomal protein L29 n=4 Tax=Saprolegniaceae ... [more]
U9SIP6_RHIID3.370e-1268.8960S ribosomal protein L29 n=4 Tax=Glomeraceae TaxI... [more]
D8TVB8_VOLCA3.680e-1269.5760S ribosomal protein L29 n=1 Tax=Volvox carteri f... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002673Ribosomal protein L29ePFAMPF01779Ribosomal_L29ecoord: 3..41
e-value: 2.4E-18
score: 66.2
IPR002673Ribosomal protein L29ePANTHERPTHR1288460S RIBOSOMAL PROTEIN L29coord: 3..51
NoneNo IPR availableGENE3D6.10.140.1730coord: 2..52
e-value: 1.3E-18
score: 69.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availablePANTHERPTHR12884:SF060S RIBOSOMAL PROTEIN L29coord: 3..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_65contigContig_65:252741..253331 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149423mRNA_12665Tribonema minus UTEX_B_3156 mRNAContig_65 252741..253331 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|149423|gw1.65.81.1 ID=Trimin1|149423|gw1.65.81.1|Name=jgi.p|Trimin1|149423|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=52bp
LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNP
RK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002673Ribosomal_L29e