Trimin1|143231|gw1.131.34.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|143231
Unique NameTrimin1|143231|gw1.131.34.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length146
Homology
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A835ZF75_9STRA (BHD_3 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF75_9STRA)

HSP 1 Score: 290 bits (743), Expect = 2.050e-99
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYGH 146
            DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYGH
Sbjct:    1 DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYGH 146          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A7S3ST52_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3ST52_EMIHU)

HSP 1 Score: 109 bits (273), Expect = 9.020e-28
Identity = 66/142 (46.48%), Postives = 84/142 (59.15%), Query Frame = 0
Query:    4 LYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 145
            LY  WQT  Y PP A+ GV+PR+ E G V++W+     LP GT +L     A HVAAAA+ LGVDCAPA VGF F+ GR VP+  G +VC+E A  ++ AA  +AE    K   +  +  L +W  LL  L  R RL  QYG
Sbjct:   20 LYAEWQTYAYEPPAAIGGVVPRS-ERGHVEMWS--EKHLPLGTKWLR----APHVAAAAKKLGVDCAPAMVGFDFRDGRSVPRFDGVIVCEEAAPLLVEAAAGIAEAEEDKLSRKLRRRALGQWATLLNALRLRARLEAQYG 154          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A1B6IBJ9_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6IBJ9_9HEMI)

HSP 1 Score: 107 bits (267), Expect = 3.220e-26
Identity = 62/144 (43.06%), Postives = 91/144 (63.19%), Query Frame = 0
Query:    2 VPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 145
            +PL+GHWQ E Y PPPAV+G +PRN EYG V+L+     +LPAGTV+L   +    +A  AR LG+DCAPA VG+ F  G   P + GF+VC+E    ++ A +   +++  +++ + E  V   WKRL++ LL R RL+ +Y 
Sbjct:   61 LPLFGHWQVEDYIPPPAVDGKVPRN-EYGNVELYKPC--MLPAGTVHLQVPQ----LARVARKLGIDCAPAVVGWEFSGGGSHPVLDGFIVCEEFKETLLDAWDKEMDESAKRSKEKLEAKVYGNWKRLIKGLLIRERLKTRYN 197          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: UPI001EE9F1B6 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EE9F1B6)

HSP 1 Score: 107 bits (267), Expect = 9.030e-25
Identity = 62/144 (43.06%), Postives = 91/144 (63.19%), Query Frame = 0
Query:    2 VPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 145
            +PL+GHWQ E Y PPPAV+G +PRN EYG V+L+     +LPAGTV+L   +    +A  AR LG+DCAPA VG+ F  G   P + GF+VC+E    ++ A +   +++  +++ + E  V   WKRL++ LL R RL+ +Y 
Sbjct:  254 LPLFGHWQVEDYIPPPAVDGKVPRN-EYGNVELYKPC--MLPAGTVHLQVPQ----LARVARKLGIDCAPAVVGWEFSGGGSHPVLDGFIVCEEFKETLLNAWDKEMDESAKRSKEKLEAKVYGNWKRLIKGLLIRERLKTKYN 390          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: UPI000995B6A2 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI000995B6A2)

HSP 1 Score: 106 bits (265), Expect = 5.650e-24
Identity = 66/141 (46.81%), Postives = 89/141 (63.12%), Query Frame = 0
Query:    4 LYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQY 144
            L+G WQT  Y PP A NG++PRN EYG+VDL+     +LP GTV++N   G + +A   R L +DCAPA VGF FKS   VP ++GFVVC E+   +  A EA   +A  +   +REK +   WKRL++ LL R +L Q+Y
Sbjct:  756 LFGEWQTTEYVPPEAKNGIVPRN-EYGSVDLFK--ECMLPKGTVHIN-LPGLNRIA---RKLNIDCAPAVVGFNFKSVGAVPAVEGFVVCAEYEDTLREAWEAEQVEASRRTAEKREKRIYGNWKRLIKGLLIREKLSQKY 889          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: R1D5Y6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5Y6_EMIHU)

HSP 1 Score: 105 bits (261), Expect = 1.630e-23
Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 0
Query:    8 WQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 145
            WQT  Y PP A+ GV+PR+ E G V++W+     LP GT +L     A HVAAAA+ LGVDCAPA VGF F+ GR VP+  G +VC+E A  ++ AA  +AE    K   +  +  L +W  LL  L  R RL  QYG
Sbjct:  435 WQTYAYEPPAAIGGVVPRS-ERGHVEMWS--EKHLPLGTKWLR----APHVAAAAKKLGVDCAPAMVGFDFRDGRSVPRFDGVIVCEEAAPLLVEAAAGIAEAEEDKLSRKLRRRALGQWATLLNALRLRARLEAQYG 565          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A7K6AXR4_UPUEP (XPC protein (Fragment) n=2 Tax=Upupiformes TaxID=57389 RepID=A0A7K6AXR4_UPUEP)

HSP 1 Score: 102 bits (254), Expect = 1.980e-23
Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = 0
Query:    1 DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 145
            D+PL+GHWQTE Y+PP AV+G +PRN EYG V L+   +++LP G V+L       ++   AR LG+DCA A  GF F  G   P   G++VC+E+   ++AA E    +   K + +REK  L  WK L + LL R RL+Q+Y 
Sbjct:  107 DLPLFGHWQTEEYQPPVAVDGKVPRN-EYGNVYLFV--QSMLPIGCVHLR----LPNLNRVARKLGIDCAQAITGFDFHGGYSHPVTDGYIVCEEYKEVLIAAWENEQAEIEKKEKEKREKRALGNWKLLTKGLLIRERLKQRYS 244          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: W5N634_LEPOC (Xeroderma pigmentosum, complementation group C n=3 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5N634_LEPOC)

HSP 1 Score: 103 bits (258), Expect = 4.950e-23
Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 0
Query:    1 DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 145
            D+PL+GHWQTE Y+PP AV+G +PRN EYG V L+     +LP G V+L       ++   AR L +DCAPA  GF F  G   P ++G+V C+E+   ++AA E    +   K + +REK VL  W  L++ LL R RL+++YG
Sbjct:  718 DLPLFGHWQTEEYQPPVAVDGKVPRN-EYGNVYLFRPC--MLPIGCVHLQ----VPNLHRVARKLNIDCAPAVTGFDFHCGFSHPVIEGYVACEEYKEVLLAAWENEQAELEKKEREKREKRVLSNWTLLVKGLLIRERLKRRYG 855          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: UPI001884E179 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884E179)

HSP 1 Score: 103 bits (257), Expect = 6.870e-23
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 0
Query:    2 VPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 145
            +P++G WQTE Y PP A  GV+PRN  YG V+L+    ++LP GTV+L   +G S VA   + LG+DCAPA VG+ +  G   P  +G+VVC+E    +M A E    +AR + + R EK VL  W+RL + LL R RL  +Y 
Sbjct:  735 LPVFGRWQTEQYVPPTAEGGVVPRN-AYGNVELFKP--SMLPGGTVHL-AVDGLSRVA---KKLGIDCAPAMVGWDYHCGGSHPVFEGYVVCEEFQDTLMEAWEQEQREARRRQRERHEKRVLDNWRRLTRGLLIRQRLANKYS 871          
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A6A4VZL4_AMPAM (DNA repair protein complementing XP-C cells n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VZL4_AMPAM)

HSP 1 Score: 103 bits (256), Expect = 9.030e-23
Identity = 66/146 (45.21%), Postives = 92/146 (63.01%), Query Frame = 0
Query:    1 DVPL--YGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQY 144
            D PL  +G WQT  Y PP A  G +PRN +YG V+L+    ++LP GTV+LN  EG S VA   + LG+DCAPA VG+ +  G   P  +G+VVC+E    +M A EA   +AR + + +REK +L  W+RL++ LL R RL ++Y
Sbjct:  583 DKPLEVFGRWQTAEYVPPRAEGGKVPRN-DYGNVELFKP--SMLPGGTVHLNV-EGLSRVA---KRLGIDCAPAMVGWDYHCGGSHPVFEGYVVCEEFEDTLMDAWEADQREARRRQREKREKRILDNWRRLVRGLLIRQRLARKY 721          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF75_9STRA2.050e-99100.00BHD_3 domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S3ST52_EMIHU9.020e-2846.48Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A1B6IBJ9_9HEMI3.220e-2643.06Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]
UPI001EE9F1B69.030e-2543.06DNA repair protein complementing XP-C cells homolo... [more]
UPI000995B6A25.650e-2446.81DNA repair protein complementing XP-C cells homolo... [more]
R1D5Y6_EMIHU1.630e-2346.38Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7K6AXR4_UPUEP1.980e-2343.45XPC protein (Fragment) n=2 Tax=Upupiformes TaxID=5... [more]
W5N634_LEPOC4.950e-2343.45Xeroderma pigmentosum, complementation group C n=3... [more]
UPI001884E1796.870e-2344.44DNA repair protein complementing XP-C cells homolo... [more]
A0A6A4VZL4_AMPAM9.030e-2345.21DNA repair protein complementing XP-C cells n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018328Rad4 beta-hairpin domain 3SMARTSM01032BHD_3_2coord: 23..104
e-value: 3.1E-15
score: 66.6
IPR018328Rad4 beta-hairpin domain 3PFAMPF10405BHD_3coord: 23..102
e-value: 3.0E-15
score: 56.3
IPR042488Rad4, beta-hairpin domain 3 superfamilyGENE3D3.30.70.2460coord: 30..109
e-value: 6.4E-17
score: 63.3
IPR004583DNA repair protein Rad4PANTHERPTHR12135DNA REPAIR PROTEIN XP-C / RAD4coord: 2..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_131contigContig_131:187422..189865 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143231mRNA_13622Tribonema minus UTEX_B_3156 mRNAContig_131 187422..189865 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|143231|gw1.131.34.1 ID=Trimin1|143231|gw1.131.34.1|Name=jgi.p|Trimin1|143231|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLN
PQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAV
MAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYGH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018328Rad4_beta-hairpin_dom3
IPR042488Rad4_BHD3_sf
IPR004583DNA_repair_Rad4