mRNA_13622 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A835ZF75_9STRA (BHD_3 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF75_9STRA) HSP 1 Score: 290 bits (743), Expect = 2.050e-99 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
Query: 1 DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYGH 438
DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYGH
Sbjct: 1 DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYGH 146
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A7S3ST52_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3ST52_EMIHU) HSP 1 Score: 109 bits (273), Expect = 9.020e-28 Identity = 66/142 (46.48%), Postives = 84/142 (59.15%), Query Frame = 1
Query: 10 LYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 435
LY WQT Y PP A+ GV+PR+ E G V++W+ LP GT +L A HVAAAA+ LGVDCAPA VGF F+ GR VP+ G +VC+E A ++ AA +AE K + + L +W LL L R RL QYG
Sbjct: 20 LYAEWQTYAYEPPAAIGGVVPRS-ERGHVEMWS--EKHLPLGTKWLR----APHVAAAAKKLGVDCAPAMVGFDFRDGRSVPRFDGVIVCEEAAPLLVEAAAGIAEAEEDKLSRKLRRRALGQWATLLNALRLRARLEAQYG 154
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A1B6IBJ9_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6IBJ9_9HEMI) HSP 1 Score: 107 bits (267), Expect = 3.220e-26 Identity = 62/144 (43.06%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 4 VPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 435
+PL+GHWQ E Y PPPAV+G +PRN EYG V+L+ +LPAGTV+L + +A AR LG+DCAPA VG+ F G P + GF+VC+E ++ A + +++ +++ + E V WKRL++ LL R RL+ +Y
Sbjct: 61 LPLFGHWQVEDYIPPPAVDGKVPRN-EYGNVELYKPC--MLPAGTVHLQVPQ----LARVARKLGIDCAPAVVGWEFSGGGSHPVLDGFIVCEEFKETLLDAWDKEMDESAKRSKEKLEAKVYGNWKRLIKGLLIRERLKTRYN 197
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: UPI001EE9F1B6 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EE9F1B6) HSP 1 Score: 107 bits (267), Expect = 9.030e-25 Identity = 62/144 (43.06%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 4 VPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 435
+PL+GHWQ E Y PPPAV+G +PRN EYG V+L+ +LPAGTV+L + +A AR LG+DCAPA VG+ F G P + GF+VC+E ++ A + +++ +++ + E V WKRL++ LL R RL+ +Y
Sbjct: 254 LPLFGHWQVEDYIPPPAVDGKVPRN-EYGNVELYKPC--MLPAGTVHLQVPQ----LARVARKLGIDCAPAVVGWEFSGGGSHPVLDGFIVCEEFKETLLNAWDKEMDESAKRSKEKLEAKVYGNWKRLIKGLLIRERLKTKYN 390
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: UPI000995B6A2 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI000995B6A2) HSP 1 Score: 106 bits (265), Expect = 5.650e-24 Identity = 66/141 (46.81%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 10 LYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQY 432
L+G WQT Y PP A NG++PRN EYG+VDL+ +LP GTV++N G + +A R L +DCAPA VGF FKS VP ++GFVVC E+ + A EA +A + +REK + WKRL++ LL R +L Q+Y
Sbjct: 756 LFGEWQTTEYVPPEAKNGIVPRN-EYGSVDLFK--ECMLPKGTVHIN-LPGLNRIA---RKLNIDCAPAVVGFNFKSVGAVPAVEGFVVCAEYEDTLREAWEAEQVEASRRTAEKREKRIYGNWKRLIKGLLIREKLSQKY 889
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: R1D5Y6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5Y6_EMIHU) HSP 1 Score: 105 bits (261), Expect = 1.630e-23 Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 1
Query: 22 WQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 435
WQT Y PP A+ GV+PR+ E G V++W+ LP GT +L A HVAAAA+ LGVDCAPA VGF F+ GR VP+ G +VC+E A ++ AA +AE K + + L +W LL L R RL QYG
Sbjct: 435 WQTYAYEPPAAIGGVVPRS-ERGHVEMWS--EKHLPLGTKWLR----APHVAAAAKKLGVDCAPAMVGFDFRDGRSVPRFDGVIVCEEAAPLLVEAAAGIAEAEEDKLSRKLRRRALGQWATLLNALRLRARLEAQYG 565
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A7K6AXR4_UPUEP (XPC protein (Fragment) n=2 Tax=Upupiformes TaxID=57389 RepID=A0A7K6AXR4_UPUEP) HSP 1 Score: 102 bits (254), Expect = 1.980e-23 Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = 1
Query: 1 DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 435
D+PL+GHWQTE Y+PP AV+G +PRN EYG V L+ +++LP G V+L ++ AR LG+DCA A GF F G P G++VC+E+ ++AA E + K + +REK L WK L + LL R RL+Q+Y
Sbjct: 107 DLPLFGHWQTEEYQPPVAVDGKVPRN-EYGNVYLFV--QSMLPIGCVHLR----LPNLNRVARKLGIDCAQAITGFDFHGGYSHPVTDGYIVCEEYKEVLIAAWENEQAEIEKKEKEKREKRALGNWKLLTKGLLIRERLKQRYS 244
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: W5N634_LEPOC (Xeroderma pigmentosum, complementation group C n=3 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5N634_LEPOC) HSP 1 Score: 103 bits (258), Expect = 4.950e-23 Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 1 DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 435
D+PL+GHWQTE Y+PP AV+G +PRN EYG V L+ +LP G V+L ++ AR L +DCAPA GF F G P ++G+V C+E+ ++AA E + K + +REK VL W L++ LL R RL+++YG
Sbjct: 718 DLPLFGHWQTEEYQPPVAVDGKVPRN-EYGNVYLFRPC--MLPIGCVHLQ----VPNLHRVARKLNIDCAPAVTGFDFHCGFSHPVIEGYVACEEYKEVLLAAWENEQAELEKKEREKREKRVLSNWTLLVKGLLIRERLKRRYG 855
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: UPI001884E179 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884E179) HSP 1 Score: 103 bits (257), Expect = 6.870e-23 Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 4 VPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQYG 435
+P++G WQTE Y PP A GV+PRN YG V+L+ ++LP GTV+L +G S VA + LG+DCAPA VG+ + G P +G+VVC+E +M A E +AR + + R EK VL W+RL + LL R RL +Y
Sbjct: 735 LPVFGRWQTEQYVPPTAEGGVVPRN-AYGNVELFKP--SMLPGGTVHL-AVDGLSRVA---KKLGIDCAPAMVGWDYHCGGSHPVFEGYVVCEEFQDTLMEAWEQEQREARRRQRERHEKRVLDNWRRLTRGLLIRQRLANKYS 871
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Match: A0A6A4VZL4_AMPAM (DNA repair protein complementing XP-C cells n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VZL4_AMPAM) HSP 1 Score: 103 bits (256), Expect = 9.030e-23 Identity = 66/146 (45.21%), Postives = 92/146 (63.01%), Query Frame = 1
Query: 1 DVPL--YGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNPQEGASHVAAAARALGVDCAPAKVGFAFKSGRGVPQMQGFVVCQEHAVAVMAAAEALAEDARGKAQARREKAVLKRWKRLLQHLLKRMRLRQQY 432
D PL +G WQT Y PP A G +PRN +YG V+L+ ++LP GTV+LN EG S VA + LG+DCAPA VG+ + G P +G+VVC+E +M A EA +AR + + +REK +L W+RL++ LL R RL ++Y
Sbjct: 583 DKPLEVFGRWQTAEYVPPRAEGGKVPRN-DYGNVELFKP--SMLPGGTVHLNV-EGLSRVA---KRLGIDCAPAMVGWDYHCGGSHPVFEGYVVCEEFEDTLMDAWEADQREARRRQREKREKRILDNWRRLVRGLLIRQRLARKY 721 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143231 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13622 ID=mRNA_13622|Name=jgi.p|Trimin1|143231|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_131:187422..189865- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GACGTACCCCTCTACGGCCACTGGCAAACGGAGCCGTACCGCCCGCCGCCback to top protein sequence of jgi.p|Trimin1|143231 >Trimin1|143231|gw1.131.34.1 ID=Trimin1|143231|gw1.131.34.1|Name=jgi.p|Trimin1|143231|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp DVPLYGHWQTEPYRPPPAVNGVIPRNPEYGTVDLWNGDRNLLPAGTVYLNback to top mRNA from alignment at Contig_131:187422..189865- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13622 ID=mRNA_13622|Name=jgi.p|Trimin1|143231|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2444bp|location=Sequence derived from alignment at Contig_131:187422..189865- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_131:187422..189865- >mRNA_13622 ID=mRNA_13622|Name=jgi.p|Trimin1|143231|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_131:187422..189865- (Tribonema minus UTEX_B_3156 )back to top |