Trimin1|142416|gw1.115.35.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|142416
Unique Name	Trimin1\|142416\|gw1.115.35.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	170

Homology

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: A0A835ZHQ1_9STRA (Hud and Au-rich element of the tumor necrosis factor alpha Rna (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ1_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.720e-105
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
            ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV
Sbjct:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: A0A836CBL9_9STRA (RNA-binding domain of Hu antigen C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL9_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.350e-34
Identity = 64/102 (62.75%), Postives = 75/102 (73.53%), Query Frame = 0

Query:    2 NLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMP 103
            NLIVNYLPH++  +RL E+FAP+G +AHAKVVRDRATGGS+GYGFVRFA                  AL+GARVG K IRVS ARPSS +I+ CKLHVAG+P
Sbjct:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFA--------RAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: A0A6J2W8N1_CHACN (ELAV-like protein n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W8N1_CHACN)

HSP 1 Score: 128 bits (322), Expect = 1.410e-32
Identity = 72/170 (42.35%), Postives = 103/170 (60.59%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
             NLIVNYLP ++    L  +F+  G +  AK++RD+ TG S+GYGFV +  P              I+ LNG R+  K I+VS ARPSS+ I++  L+++G+P    Q D+E + A  G +I  RVL++ A+G +RG AF+ F  RAEAE A  AL+G   PGA+ P+ V
Sbjct:   55 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVTGHSLGYGFVNYVNP--------SDAERAISTLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPKTMTQKDVEDMFARFGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKALNGQKPPGASEPITV 216

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: A0A6P4Z448_BRABE (ELAV-like protein 1 isoform X1 n=20 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Z448_BRABE)

HSP 1 Score: 127 bits (320), Expect = 2.850e-32
Identity = 72/170 (42.35%), Postives = 99/170 (58.24%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
             NLIVNYLP ++    +  +F+  G +   K++RD+ TG S+GYGFV +  P              I  LNG R+  K I+VS ARPSS+AI++  L+V+G+P    QADLE L   HG +I  R+L +  TG++RG  FV F  R EAE A   L+G +  GAT P+ V
Sbjct:   64 TNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKP--------QDAEKAINTLNGLRLQAKTIKVSYARPSSQAIKDANLYVSGLPKTMTQADLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKGATDPITV 225

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: I2CPF3_NANGC (Elav-like protein 2 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF3_NANGC)

HSP 1 Score: 126 bits (316), Expect = 8.000e-32
Identity = 73/170 (42.94%), Postives = 103/170 (60.59%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
             NLIVNYLP+ + D  L E+F   G +  A+V+R++ +G S+GYGFV++  P              I   NG +V GK I+VS+ARP+SE  ++ KL+VA +P    +A++  L APHG +IECR+L+   +GR RG AFV ++ R EA AA  +L    M G  RPL V
Sbjct:  116 TNLIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDP--------QSADSAILTRNGHQVYGKRIKVSVARPASEEHKHTKLYVANLPHHFTKAEVIQLFAPHGRIIECRLLMEANSGRFRGIAFVQYNTRQEAAAAIRSLHDTPMEGVPRPLIV 277

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: I3J570_ORENI (ELAV-like protein n=29 Tax=Percomorphaceae TaxID=1489872 RepID=I3J570_ORENI)

HSP 1 Score: 126 bits (316), Expect = 8.150e-32
Identity = 70/170 (41.18%), Postives = 102/170 (60.00%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
             NLIVNYLP S+    L  +F+  G +  AK++RD+  G S+GYGFV F  P              I+ LNG R+  K I+VS ARPSS+AI++  L+++G+P    Q D+E + + +G +I  RVL++ A+G +RG AF+ F  RAEA+ A   L+G   PG+  P+ V
Sbjct:   55 TNLIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVNP--------SDAERAISTLNGLRLQSKTIKVSFARPSSDAIKDANLYISGLPRTLSQQDVEDMFSHYGRIINSRVLVDQASGLSRGVAFIRFDKRAEADDAVKHLNGHTPPGSAEPITV 216

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: A0A667Y9X8_9TELE (ELAV-like protein n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667Y9X8_9TELE)

HSP 1 Score: 125 bits (315), Expect = 1.360e-31
Identity = 70/170 (41.18%), Postives = 101/170 (59.41%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
             NLIVNYLP ++    L  +F+  G +  AK++RD+  G S+GYGFV F  P              I+ LNG R+  K I+VS ARPSS+AI++  L+++G+P    Q DLE +   +G +I  RVL++ A+G +RG AF+ F  R+EAE A   L+G   PG+  P+ V
Sbjct:   65 TNLIVNYLPQNMSQEELRSLFSSIGDVESAKLIRDKVAGHSLGYGFVNFVNP--------NDAERAISTLNGLRLQSKTIKVSYARPSSDAIKDANLYISGLPKTVTQQDLEEMFTRYGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAIKYLNGHKPPGSAEPITV 226

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: A0A6I8TEB0_AEDAE (RNA-binding protein, putative n=27 Tax=Culicidae TaxID=7157 RepID=A0A6I8TEB0_AEDAE)

HSP 1 Score: 125 bits (313), Expect = 1.470e-31
Identity = 69/170 (40.59%), Postives = 98/170 (57.65%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
             NLIVNYLP  +    +  +F+  G +   K++RD+ TG S+GYGFV +                 I  LNG R+  K I+VS ARPSSEAI+   L+V+G+P    QADLE+L +P+G +I  R+L +  TG ++G  F+ F  R EAE A   L+G +  G+T P+ V
Sbjct:   22 TNLIVNYLPQQMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYQ--------RVEDASKAINTLNGLRLQNKQIKVSFARPSSEAIKGANLYVSGLPKNMLQADLESLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVEAEKAIKELNGTIPKGSTEPITV 183

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: A0A3Q2YEX9_HIPCM (ELAV-like protein n=8 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2YEX9_HIPCM)

HSP 1 Score: 125 bits (314), Expect = 1.490e-31
Identity = 70/170 (41.18%), Postives = 101/170 (59.41%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
             NLI+NYLP S+    L  +F+  G +  AK++RD+  G S+GYGFV F                 I++LNG R+  K I+VS ARPSS+ I++  L+++G+P    Q DLE + A +G +I  RVL++ A+G +RG AF+ F  RAEAE A   L+G   PG+  P+ V
Sbjct:   52 TNLIINYLPQSMNQDELRNLFSNVGEVESAKLIRDKVAGNSLGYGFVNFVN--------ASDAERAISSLNGLRLQSKTIKVSYARPSSDTIKDANLYISGLPRTISQQDLEDMFARYGHIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKQLNGHTPPGSAEPITV 213

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BLAST of jgi.p|Trimin1|142416 vs. uniprot
Match: A0A182V896_ANOME (Uncharacterized protein n=7 Tax=Cellia TaxID=44534 RepID=A0A182V896_ANOME)

HSP 1 Score: 126 bits (316), Expect = 1.940e-31
Identity = 71/170 (41.76%), Postives = 98/170 (57.65%), Query Frame = 0

Query:    1 ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAEAARAALDGLVMPGATRPLAV 170
             NLIVNYLP  +    +  +F+  G +   K++RD+ TG S+GYGFV +                 I  LNG R+  K I+VS ARPSSEAI+   L+V+G+P    QADLEAL +P+G +I  R+L +  TG ++G  F+ F  R EAE A   L+G V  G+T P+ V
Sbjct:   21 TNLIVNYLPQQMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYQ--------RAEDASKAINTLNGLRLQNKQIKVSFARPSSEAIKGANLYVSGLPKNMLQADLEALFSPYGRIITSRILCDNITGLSKGVGFIRFDQRMEAEKAIKELNGTVPKGSTEPITV 182

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|142416 vs. uniprot

BLAST of jgi.p|Trimin1|142416 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZHQ1_9STRA	1.720e-105	100.00	Hud and Au-rich element of the tumor necrosis fact...	[more]
A0A836CBL9_9STRA	1.350e-34	62.75	RNA-binding domain of Hu antigen C n=1 Tax=Tribone...	[more]
A0A6J2W8N1_CHACN	1.410e-32	42.35	ELAV-like protein n=1 Tax=Chanos chanos TaxID=2914...	[more]
A0A6P4Z448_BRABE	2.850e-32	42.35	ELAV-like protein 1 isoform X1 n=20 Tax=Branchiost...	[more]
I2CPF3_NANGC	8.000e-32	42.94	Elav-like protein 2 (Fragment) n=1 Tax=Nannochloro...	[more]
I3J570_ORENI	8.150e-32	41.18	ELAV-like protein n=29 Tax=Percomorphaceae TaxID=1...	[more]
A0A667Y9X8_9TELE	1.360e-31	41.18	ELAV-like protein n=2 Tax=Myripristis murdjan TaxI...	[more]
A0A6I8TEB0_AEDAE	1.470e-31	40.59	RNA-binding protein, putative n=27 Tax=Culicidae T...	[more]
A0A3Q2YEX9_HIPCM	1.490e-31	41.18	ELAV-like protein n=8 Tax=Syngnathidae TaxID=72045...	[more]
A0A182V896_ANOME	1.940e-31	41.76	Uncharacterized protein n=7 Tax=Cellia TaxID=44534...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002343	Paraneoplastic encephalomyelitis antigen	PRINTS	PR00961	HUDSXLRNA	coord: 66..81 score: 47.08 coord: 156..170 score: 33.7 coord: 115..127 score: 30.26 coord: 1..15 score: 52.5 coord: 82..99 score: 54.44 coord: 100..115 score: 30.21
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..170 e-value: 5.2E-9 score: 45.9 coord: 2..83 e-value: 3.7E-13 score: 59.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..163 e-value: 1.0E-10 score: 41.3 coord: 3..81 e-value: 4.1E-12 score: 45.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..87 score: 13.890656
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 95..170 score: 13.089052
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..87 e-value: 9.8E-20 score: 72.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 88..170 e-value: 1.9E-16 score: 61.9
None	No IPR available	PANTHER	PTHR10352:SF9	ELAV-LIKE PROTEIN 4	coord: 2..170
None	No IPR available	PANTHER	PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	coord: 2..170
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..161

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_115	contig	Contig_115:279736..281353 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|142416	mRNA_11674	Tribonema minus UTEX_B_3156	mRNA	Contig_115 279736..281353 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|142416|gw1.115.35.1 ID=Trimin1|142416|gw1.115.35.1|Name=jgi.p|Trimin1|142416|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=170bp
ANLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFA
GPPPPAPRAADAAAAAIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVA
GMPPASRQADLEALCAPHGTVIECRVLINTATGRARGSAFVIFSVRAEAE
AARAALDGLVMPGATRPLAV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002343	Hud_Sxl_RNA
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf