Trimin1|131700|gw1.222.17.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|131700
Unique Name	Trimin1\|131700\|gw1.222.17.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	60

Homology

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A836CGM9_9STRA (Cytochrome c oxidase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.700e-40
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG
Sbjct:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A836C9L6_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.240e-39
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG
Sbjct:    2 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 61

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: O47467_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Heterococcus caespitosus TaxID=55585 RepID=O47467_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.270e-34
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI+PGFGIISHILC+Y+ KPIFG
Sbjct:  196 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHILCEYSGKPIFG 255

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: O47469_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=Xanthophyceae TaxID=2833 RepID=O47469_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.040e-33
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKY+ K IFG
Sbjct:  196 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYSGKAIFG 255

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A0U5A1D9_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U5A1D9_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.340e-33
Identity = 50/60 (83.33%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNT+FFDPAGGGDP+LYQHLFWFFGHPEVYILI+PGFGI+SHILC ++ KP+FG
Sbjct:  155 LLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILCTFSRKPVFG 214

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: L7YDE7_SARFS (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Sargassum fusiforme TaxID=590727 RepID=L7YDE7_SARFS)

HSP 1 Score: 119 bits (297), Expect = 1.940e-32
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNT+FFDPAGGGDP+LYQHLFWFFGHPEVYILI+PGFGI+SHIL  ++ KP+FG
Sbjct:  113 LLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFG 172

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: O47473_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Vaucheria sessilis TaxID=73016 RepID=O47473_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.210e-32
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNT+FFDPAGGGDP+LYQHLFWFFGHPEVYILIIPGFGIIS ILCK++ KP+FG
Sbjct:  196 LLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILIIPGFGIISQILCKFSKKPVFG 255

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A7G4NY63_9FLOR (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Rhodomelaceae TaxID=2803 RepID=A0A7G4NY63_9FLOR)

HSP 1 Score: 121 bits (303), Expect = 2.430e-32
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI+PGFGI+SHI+  ++NKP+FG
Sbjct:  177 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIVSHIVSTFSNKPVFG 236

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A7G1K7S9_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Mutimo cylindricus TaxID=1948892 RepID=A0A7G1K7S9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.640e-32
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNT+FFDPAGGGDP+LYQHLFWFFGHPEVYI+I+PGFGI+SHIL  ++ KP+FG
Sbjct:   59 LLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYIIILPGFGIVSHILSTFSRKPVFG 118

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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A7G4NY65_9FLOR (Cytochrome c oxidase subunit 1 (Fragment) n=18 Tax=Rhodomelaceae TaxID=2803 RepID=A0A7G4NY65_9FLOR)

HSP 1 Score: 121 bits (303), Expect = 2.820e-32
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI+PGFGI+SHI+  ++NKP+FG
Sbjct:  183 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIVSHIVSTFSNKPVFG 242

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|131700 vs. uniprot

BLAST of jgi.p|Trimin1|131700 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CGM9_9STRA	1.700e-40	100.00	Cytochrome c oxidase (Fragment) n=1 Tax=Tribonema ...	[more]
A0A836C9L6_9STRA	2.240e-39	98.33	Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=...	[more]
O47467_9STRA	5.270e-34	91.67	Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=...	[more]
O47469_9STRA	1.040e-33	93.33	Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=...	[more]
A0A0U5A1D9_9PHAE	2.340e-33	83.33	Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=...	[more]
L7YDE7_SARFS	1.940e-32	81.67	Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=...	[more]
O47473_9STRA	2.210e-32	86.67	Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=...	[more]
A0A7G4NY63_9FLOR	2.430e-32	85.00	Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=...	[more]
A0A7G1K7S9_9PHAE	2.640e-32	80.00	Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=...	[more]
A0A7G4NY65_9FLOR	2.820e-32	85.00	Cytochrome c oxidase subunit 1 (Fragment) n=18 Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000883	Cytochrome c oxidase subunit I	PFAM	PF00115	COX1	coord: 2..60 e-value: 1.5E-20 score: 73.5
IPR000883	Cytochrome c oxidase subunit I	PANTHER	PTHR10422	CYTOCHROME C OXIDASE SUBUNIT 1	coord: 1..60
IPR036927	Cytochrome c oxidase-like, subunit I superfamily	GENE3D	1.20.210.10		coord: 1..60 e-value: 4.4E-29 score: 103.1
IPR036927	Cytochrome c oxidase-like, subunit I superfamily	SUPERFAMILY	81442	Cytochrome c oxidase subunit I-like	coord: 1..60
IPR023616	Cytochrome c oxidase-like, subunit I domain	PROSITE	PS50855	COX1	coord: 1..60 score: 20.798429

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_222	contig	Contig_222:76449..76628 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|131700	mRNA_17443	Tribonema minus UTEX_B_3156	mRNA	Contig_222 76449..76628 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|131700|gw1.222.17.1 ID=Trimin1|131700|gw1.222.17.1|Name=jgi.p|Trimin1|131700|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=60bp
LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHIL
CKYANKPIFG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000883	Cyt_C_Oxase_1
IPR036927	Cyt_c_oxase-like_su1_sf
IPR023616	Cyt_c_oxase-like_su1_dom