mRNA_17443 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131700
Unique NamemRNA_17443
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A836CGM9_9STRA (Cytochrome c oxidase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.700e-40
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG
Sbjct:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 60
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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A836C9L6_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.240e-39
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG
Sbjct:    2 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 61
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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: O47467_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Heterococcus caespitosus TaxID=55585 RepID=O47467_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.270e-34
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI+PGFGIISHILC+Y+ KPIFG
Sbjct:  196 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHILCEYSGKPIFG 255
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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: O47469_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=Xanthophyceae TaxID=2833 RepID=O47469_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.040e-33
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKY+ K IFG
Sbjct:  196 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYSGKAIFG 255
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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A0U5A1D9_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U5A1D9_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.340e-33
Identity = 50/60 (83.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNT+FFDPAGGGDP+LYQHLFWFFGHPEVYILI+PGFGI+SHILC ++ KP+FG
Sbjct:  155 LLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILCTFSRKPVFG 214
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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: L7YDE7_SARFS (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Sargassum fusiforme TaxID=590727 RepID=L7YDE7_SARFS)

HSP 1 Score: 119 bits (297), Expect = 1.940e-32
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNT+FFDPAGGGDP+LYQHLFWFFGHPEVYILI+PGFGI+SHIL  ++ KP+FG
Sbjct:  113 LLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFG 172
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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: O47473_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Vaucheria sessilis TaxID=73016 RepID=O47473_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.210e-32
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNT+FFDPAGGGDP+LYQHLFWFFGHPEVYILIIPGFGIIS ILCK++ KP+FG
Sbjct:  196 LLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILIIPGFGIISQILCKFSKKPVFG 255
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BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A7G4NY63_9FLOR (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Rhodomelaceae TaxID=2803 RepID=A0A7G4NY63_9FLOR)

HSP 1 Score: 121 bits (303), Expect = 2.430e-32
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI+PGFGI+SHI+  ++NKP+FG
Sbjct:  177 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIVSHIVSTFSNKPVFG 236
[Close]
BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A7G1K7S9_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Mutimo cylindricus TaxID=1948892 RepID=A0A7G1K7S9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.640e-32
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNT+FFDPAGGGDP+LYQHLFWFFGHPEVYI+I+PGFGI+SHIL  ++ KP+FG
Sbjct:   59 LLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYIIILPGFGIVSHILSTFSRKPVFG 118
[Close]
BLAST of jgi.p|Trimin1|131700 vs. uniprot
Match: A0A7G4NY65_9FLOR (Cytochrome c oxidase subunit 1 (Fragment) n=18 Tax=Rhodomelaceae TaxID=2803 RepID=A0A7G4NY65_9FLOR)

HSP 1 Score: 121 bits (303), Expect = 2.820e-32
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHILCKYANKPIFG 180
            L TDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI+PGFGI+SHI+  ++NKP+FG
Sbjct:  183 LLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIVSHIVSTFSNKPVFG 242
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131700 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGM9_9STRA1.700e-40100.00Cytochrome c oxidase (Fragment) n=1 Tax=Tribonema ... [more]
A0A836C9L6_9STRA2.240e-3998.33Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
O47467_9STRA5.270e-3491.67Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
O47469_9STRA1.040e-3393.33Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=... [more]
A0A0U5A1D9_9PHAE2.340e-3383.33Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=... [more]
L7YDE7_SARFS1.940e-3281.67Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=... [more]
O47473_9STRA2.210e-3286.67Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
A0A7G4NY63_9FLOR2.430e-3285.00Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=... [more]
A0A7G1K7S9_9PHAE2.640e-3280.00Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=... [more]
A0A7G4NY65_9FLOR2.820e-3285.00Cytochrome c oxidase subunit 1 (Fragment) n=18 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_222contigContig_222:76449..76628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131700|gw1.222.17.1
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
BRITEko00000,ko00001,ko00002,ko01000,ko03029
KEGG ModuleM00154
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG koko:K02256
EC1.9.3.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
DescriptionCytochrome C and Quinol oxidase polypeptide I
COG categoryC
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG0843@1|root,KOG4769@2759|Eukaryota,37QZZ@33090|Viridiplantae,34JUG@3041|Chlorophyta
Evalue4.24e-31
Seed ortholog70448.Q0P3F1
Hectar predicted targeting categoryother localisation
TranscriptId132022
TrackFilteredModels1
ProteinId131700
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131700gene_17443Tribonema minus UTEX_B_3156 geneContig_222 76449..76628 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17443_1exon_17443_1Tribonema minus UTEX_B_3156 exonContig_222 76449..76628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17443CDS_17443Tribonema minus UTEX_B_3156 CDSContig_222 76449..76628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131700Trimin1|131700|gw1.222.17.1Tribonema minus UTEX_B_3156 polypeptideContig_222 76449..76628 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17443 ID=mRNA_17443|Name=jgi.p|Trimin1|131700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=180bp|location=Sequence derived from alignment at Contig_222:76449..76628+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGTTCACTGATCGTAACTTTAATACAAGTTTTTTTGATCCTGCTGGAGG
TGGTGATCCAATTCTATACCAACATTTATTTTGGTTCTTTGGTCACCCTG
AAGTTTATATTTTAATTATTCCAGGTTTCGGGATTATTAGCCATATTTTA
TGTAAATACGCAAACAAACCAATTTTTGGG
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protein sequence of jgi.p|Trimin1|131700

>Trimin1|131700|gw1.222.17.1 ID=Trimin1|131700|gw1.222.17.1|Name=jgi.p|Trimin1|131700|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=60bp
LFTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISHIL
CKYANKPIFG
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mRNA from alignment at Contig_222:76449..76628+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17443 ID=mRNA_17443|Name=jgi.p|Trimin1|131700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=180bp|location=Sequence derived from alignment at Contig_222:76449..76628+ (Tribonema minus UTEX_B_3156 )
TTGTTCACTGATCGTAACTTTAATACAAGTTTTTTTGATCCTGCTGGAGG
TGGTGATCCAATTCTATACCAACATTTATTTTGGTTCTTTGGTCACCCTG
AAGTTTATATTTTAATTATTCCAGGTTTCGGGATTATTAGCCATATTTTA
TGTAAATACGCAAACAAACCAATTTTTGGG
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Coding sequence (CDS) from alignment at Contig_222:76449..76628+

>mRNA_17443 ID=mRNA_17443|Name=jgi.p|Trimin1|131700|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=180bp|location=Sequence derived from alignment at Contig_222:76449..76628+ (Tribonema minus UTEX_B_3156 )
TTGTTCACTGATCGTAACTTTAATACAAGTTTTTTTGATCCTGCTGGAGG
TGGTGATCCAATTCTATACCAACATTTATTTTGGTTCTTTGGTCACCCTG
AAGTTTATATTTTAATTATTCCAGGTTTCGGGATTATTAGCCATATTTTA
TGTAAATACGCAAACAAACCAATTTTTGGG
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