Trimin1|129452|gw1.189.3.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|129452
Unique NameTrimin1|129452|gw1.189.3.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length205
Homology
[Close]
BLAST of jgi.p|Trimin1|129452 vs. uniprot
Match: A0A836CKQ5_9STRA (Zinc finger protein 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.490e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 
Query:    1 KPFTCDVEGCNYASTDSGNLNTHKRTHTGEK 31
            KPFTCDVEGCNYASTDSGNLNTHKRTHTGEK
Sbjct:    1 KPFTCDVEGCNYASTDSGNLNTHKRTHTGEK 31
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129452 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CKQ5_9STRA3.490e-12100.00Zinc finger protein 2 (Fragment) n=1 Tax=Tribonema... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 183..205
e-value: 25.0
score: 9.7
coord: 93..117
e-value: 4.1E-4
score: 29.7
coord: 63..87
e-value: 0.021
score: 24.0
coord: 123..147
e-value: 4.1E-4
score: 29.7
coord: 153..177
e-value: 1.2
score: 18.2
coord: 33..57
e-value: 6.1E-4
score: 29.1
coord: 3..27
e-value: 0.0031
score: 26.7
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 3..27
e-value: 0.0036
score: 17.7
coord: 93..117
e-value: 8.2E-5
score: 22.8
coord: 123..147
e-value: 8.2E-5
score: 22.8
coord: 153..177
e-value: 0.0014
score: 18.9
coord: 63..87
e-value: 0.0063
score: 16.9
coord: 33..57
e-value: 1.5E-4
score: 22.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 95..117
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 125..147
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 35..57
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 155..177
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 65..87
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 183..205
score: 9.265423
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 93..122
score: 16.123846
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 153..182
score: 14.897642
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 33..62
score: 15.895231
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 63..92
score: 13.318127
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 123..152
score: 16.123846
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 3..32
score: 13.567524
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 150..178
e-value: 3.9E-15
score: 57.4
coord: 61..89
e-value: 5.8E-13
score: 50.4
coord: 1..30
e-value: 8.0E-12
score: 46.8
coord: 121..149
e-value: 1.2E-17
score: 65.4
coord: 31..60
e-value: 2.9E-19
score: 70.6
coord: 90..120
e-value: 3.4E-15
score: 57.6
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 179..205
e-value: 1.0E-9
score: 39.9
NoneNo IPR availablePANTHERPTHR23235KRUEPPEL-LIKE TRANSCRIPTION FACTORcoord: 1..92
coord: 63..126
coord: 90..177
coord: 123..203
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 62..96
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 103..164
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 17..70
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 147..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_189contigContig_189:50883..51497 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129452mRNA_17338Tribonema minus UTEX_B_3156 mRNAContig_189 50883..51497 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|129452|gw1.189.3.1 ID=Trimin1|129452|gw1.189.3.1|Name=jgi.p|Trimin1|129452|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
KPFTCDVEGCNYASTDSGNLNTHKRTHTGEKPFACDVAGCGAAFADSGNL
VTHMRTHTGEKPYSCDFVGCKAAFARSHHLVSHVRAHISEKPFKCDVEGC
GAAFTTSGSLVSHRRTHTGEKPFKCDVEGCGAAFTTSGSLVSHRRTHTGE
KPFVCDIGVCGAAFTMSSQLIVHTRIHSNEKPFSCDFEGCDAAFAQSSHL
VTHKQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf