mRNA_17338 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129452
Unique NamemRNA_17338
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129452 vs. uniprot
Match: A0A836CKQ5_9STRA (Zinc finger protein 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.490e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 KPFTCDVEGCNYASTDSGNLNTHKRTHTGEK 93
            KPFTCDVEGCNYASTDSGNLNTHKRTHTGEK
Sbjct:    1 KPFTCDVEGCNYASTDSGNLNTHKRTHTGEK 31
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129452 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CKQ5_9STRA3.490e-12100.00Zinc finger protein 2 (Fragment) n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_189contigContig_189:50883..51497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129452|gw1.189.3.1
Hectar predicted targeting categoryother localisation
TranscriptId129774
TrackFilteredModels1
ProteinId129452
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129452gene_17338Tribonema minus UTEX_B_3156 geneContig_189 50883..51497 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17338_1exon_17338_1Tribonema minus UTEX_B_3156 exonContig_189 50883..51497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17338CDS_17338Tribonema minus UTEX_B_3156 CDSContig_189 50883..51497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129452Trimin1|129452|gw1.189.3.1Tribonema minus UTEX_B_3156 polypeptideContig_189 50883..51497 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17338 ID=mRNA_17338|Name=jgi.p|Trimin1|129452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=615bp|location=Sequence derived from alignment at Contig_189:50883..51497- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCCTTTCACGTGTGATGTGGAGGGCTGTAACTACGCGAGCACAGACTC
CGGCAACCTCAACACACACAAGCGCACCCACACTGGCGAGAAGCCATTCG
CATGTGATGTGGCAGGCTGTGGTGCGGCGTTTGCTGATTCCGGCAACCTT
GTCACCCACATGCGCACCCACACAGGCGAGAAGCCGTACAGCTGTGACTT
CGTTGGATGTAAAGCAGCTTTTGCTCGCAGCCACCACCTTGTCAGCCACG
TGCGAGCCCATATCAGCGAGAAGCCGTTCAAGTGTGATGTTGAGGGTTGT
GGTGCAGCCTTCACTACTTCCGGCAGCCTCGTCTCTCACCGGCGCACCCA
CACCGGCGAGAAGCCGTTCAAGTGTGATGTTGAGGGTTGTGGTGCAGCCT
TCACTACTTCCGGCAGCCTCGTCTCTCACCGGCGCACTCACACCGGCGAG
AAGCCGTTCGTCTGCGATATTGGGGTGTGTGGTGCGGCCTTCACTATGTC
CAGTCAGCTCATCGTCCACACGCGCATCCATAGCAACGAGAAGCCGTTTT
CCTGTGACTTCGAGGGATGCGATGCGGCATTCGCGCAGTCCAGCCACCTC
GTCACGCACAAGCAG
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protein sequence of jgi.p|Trimin1|129452

>Trimin1|129452|gw1.189.3.1 ID=Trimin1|129452|gw1.189.3.1|Name=jgi.p|Trimin1|129452|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
KPFTCDVEGCNYASTDSGNLNTHKRTHTGEKPFACDVAGCGAAFADSGNL
VTHMRTHTGEKPYSCDFVGCKAAFARSHHLVSHVRAHISEKPFKCDVEGC
GAAFTTSGSLVSHRRTHTGEKPFKCDVEGCGAAFTTSGSLVSHRRTHTGE
KPFVCDIGVCGAAFTMSSQLIVHTRIHSNEKPFSCDFEGCDAAFAQSSHL
VTHKQ
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mRNA from alignment at Contig_189:50883..51497-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17338 ID=mRNA_17338|Name=jgi.p|Trimin1|129452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=615bp|location=Sequence derived from alignment at Contig_189:50883..51497- (Tribonema minus UTEX_B_3156 )
AAGCCTTTCACGTGTGATGTGGAGGGCTGTAACTACGCGAGCACAGACTC
CGGCAACCTCAACACACACAAGCGCACCCACACTGGCGAGAAGCCATTCG
CATGTGATGTGGCAGGCTGTGGTGCGGCGTTTGCTGATTCCGGCAACCTT
GTCACCCACATGCGCACCCACACAGGCGAGAAGCCGTACAGCTGTGACTT
CGTTGGATGTAAAGCAGCTTTTGCTCGCAGCCACCACCTTGTCAGCCACG
TGCGAGCCCATATCAGCGAGAAGCCGTTCAAGTGTGATGTTGAGGGTTGT
GGTGCAGCCTTCACTACTTCCGGCAGCCTCGTCTCTCACCGGCGCACCCA
CACCGGCGAGAAGCCGTTCAAGTGTGATGTTGAGGGTTGTGGTGCAGCCT
TCACTACTTCCGGCAGCCTCGTCTCTCACCGGCGCACTCACACCGGCGAG
AAGCCGTTCGTCTGCGATATTGGGGTGTGTGGTGCGGCCTTCACTATGTC
CAGTCAGCTCATCGTCCACACGCGCATCCATAGCAACGAGAAGCCGTTTT
CCTGTGACTTCGAGGGATGCGATGCGGCATTCGCGCAGTCCAGCCACCTC
GTCACGCACAAGCAG
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Coding sequence (CDS) from alignment at Contig_189:50883..51497-

>mRNA_17338 ID=mRNA_17338|Name=jgi.p|Trimin1|129452|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=615bp|location=Sequence derived from alignment at Contig_189:50883..51497- (Tribonema minus UTEX_B_3156 )
AAGCCTTTCACGTGTGATGTGGAGGGCTGTAACTACGCGAGCACAGACTC
CGGCAACCTCAACACACACAAGCGCACCCACACTGGCGAGAAGCCATTCG
CATGTGATGTGGCAGGCTGTGGTGCGGCGTTTGCTGATTCCGGCAACCTT
GTCACCCACATGCGCACCCACACAGGCGAGAAGCCGTACAGCTGTGACTT
CGTTGGATGTAAAGCAGCTTTTGCTCGCAGCCACCACCTTGTCAGCCACG
TGCGAGCCCATATCAGCGAGAAGCCGTTCAAGTGTGATGTTGAGGGTTGT
GGTGCAGCCTTCACTACTTCCGGCAGCCTCGTCTCTCACCGGCGCACCCA
CACCGGCGAGAAGCCGTTCAAGTGTGATGTTGAGGGTTGTGGTGCAGCCT
TCACTACTTCCGGCAGCCTCGTCTCTCACCGGCGCACTCACACCGGCGAG
AAGCCGTTCGTCTGCGATATTGGGGTGTGTGGTGCGGCCTTCACTATGTC
CAGTCAGCTCATCGTCCACACGCGCATCCATAGCAACGAGAAGCCGTTTT
CCTGTGACTTCGAGGGATGCGATGCGGCATTCGCGCAGTCCAGCCACCTC
GTCACGCACAAGCAG
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