Trimin1|128869|gw1.58.1.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|128869
Unique Name	Trimin1\|128869\|gw1.58.1.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	116

Homology

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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A835YNT8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT8_9STRA)

HSP 1 Score: 236 bits (603), Expect = 4.940e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK
Sbjct:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116

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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1MUZ5_9FLOR (DNA-directed RNA polymerase (Fragment) n=1 Tax=Polysiphonia teges TaxID=2007110 RepID=A0A1Z1MUZ5_9FLOR)

HSP 1 Score: 203 bits (517), Expect = 3.980e-64
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            LFN   PGK IL DGRTGESFDNP+ VGK+Y+LKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+PIPK
Sbjct:   72 LFNYSHPGKTILFDGRTGESFDNPVTVGKAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPK 187

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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: B7T1S6_VAULI (DNA-directed RNA polymerase subunit beta n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1S6_VAULI)

HSP 1 Score: 210 bits (535), Expect = 6.140e-61
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            LFN Y PGKV+L DGRTGE+FDNPILVGK+YILKLIHLVDDK+HAR+ GPYSL+TQQP+GGKSQ+GGQRFGEMEVWALEAFGAAYTLQELLTVKSDD++GRN VL AIVKGQPIPK
Sbjct:  928 LFNEYSPGKVLLKDGRTGENFDNPILVGKTYILKLIHLVDDKLHARSIGPYSLITQQPLGGKSQKGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDIQGRNNVLYAIVKGQPIPK 1043

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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1M8S6_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Caloglossa beccarii TaxID=131038 RepID=A0A1Z1M8S6_9FLOR)

HSP 1 Score: 210 bits (534), Expect = 8.930e-61
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            LFN Y PGKVIL DGRTGESFDNPI VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAI+KG+PIPK
Sbjct:  949 LFNTYHPGKVILFDGRTGESFDNPITVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIIKGKPIPK 1064

[Close]

BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1M6G5_9FLOR (DNA-directed RNA polymerase subunit beta n=2 Tax=Caloglossa TaxID=31388 RepID=A0A1Z1M6G5_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 4.300e-60
Identity = 97/116 (83.62%), Postives = 109/116 (93.97%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            LFN Y PGK+IL DGRTGE+FDNP+ VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAI+KG+PIPK
Sbjct:  949 LFNSYYPGKMILCDGRTGEAFDNPVTVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIIKGKPIPK 1064

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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1MK38_9FLOR (DNA-directed RNA polymerase subunit beta n=2 Tax=Dasyaceae TaxID=35164 RepID=A0A1Z1MK38_9FLOR)

HSP 1 Score: 207 bits (528), Expect = 5.880e-60
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            LFN Y PGK+IL DGRTGE+FDNPI VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+PIPK
Sbjct:  949 LFNFYHPGKMILLDGRTGEAFDNPITVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPK 1064

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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A516ZA65_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516ZA65_9STRA)

HSP 1 Score: 207 bits (527), Expect = 7.350e-60
Identity = 97/116 (83.62%), Postives = 108/116 (93.10%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            LFN Y PG++ LTDGRTG+ FDNPI V K+Y+LKL+HLVDDKIHAR+TGPYSLVTQQP+GG+SQQGGQRFGEMEVWALEAFGAAYTLQELLT+KSDDM GRNE LNAIVKG+PIPK
Sbjct:  902 LFNNYSPGRISLTDGRTGDMFDNPITVCKTYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRSQQGGQRFGEMEVWALEAFGAAYTLQELLTIKSDDMHGRNEALNAIVKGEPIPK 1017

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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A4D6WKU9_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Apoglossum ruscifolium TaxID=167976 RepID=A0A4D6WKU9_9FLOR)

HSP 1 Score: 207 bits (526), Expect = 1.100e-59
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            +FN Y PGK+IL DGRTGE FDNPI VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+PIPK
Sbjct:  949 IFNSYHPGKMILCDGRTGEPFDNPITVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPK 1064

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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A838VWG5_9NOST (DNA-directed RNA polymerase n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VWG5_9NOST)

HSP 1 Score: 191 bits (484), Expect = 1.420e-59
Identity = 92/116 (79.31%), Postives = 104/116 (89.66%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            +FN   PGK+ + DGRTGE FD  I VG +Y+LKL+HLVDDKIHAR+TGPYSLVTQQP+GGK+QQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+ IP+
Sbjct:   27 VFNPDNPGKIQVYDGRTGEPFDRAITVGVAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPR 142

[Close]

BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1MH01_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Dasya naccarioides TaxID=2007180 RepID=A0A1Z1MH01_9FLOR)

HSP 1 Score: 206 bits (525), Expect = 1.500e-59
Identity = 97/116 (83.62%), Postives = 109/116 (93.97%), Query Frame = 0

Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
            LFN Y PGK++L+DGRTG+ FDNPI VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+PIPK
Sbjct:  949 LFNNYHPGKMMLSDGRTGQCFDNPITVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPK 1064

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|128869 vs. uniprot

BLAST of jgi.p|Trimin1|128869 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YNT8_9STRA	4.940e-79	100.00	DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri...	[more]
A0A1Z1MUZ5_9FLOR	3.980e-64	83.62	DNA-directed RNA polymerase (Fragment) n=1 Tax=Pol...	[more]
B7T1S6_VAULI	6.140e-61	86.21	DNA-directed RNA polymerase subunit beta n=1 Tax=V...	[more]
A0A1Z1M8S6_9FLOR	8.930e-61	86.21	DNA-directed RNA polymerase subunit beta n=1 Tax=C...	[more]
A0A1Z1M6G5_9FLOR	4.300e-60	83.62	DNA-directed RNA polymerase subunit beta n=2 Tax=C...	[more]
A0A1Z1MK38_9FLOR	5.880e-60	85.34	DNA-directed RNA polymerase subunit beta n=2 Tax=D...	[more]
A0A516ZA65_9STRA	7.350e-60	83.62	DNA-directed RNA polymerase subunit beta n=1 Tax=F...	[more]
A0A4D6WKU9_9FLOR	1.100e-59	84.48	DNA-directed RNA polymerase subunit beta n=1 Tax=A...	[more]
A0A838VWG5_9NOST	1.420e-59	79.31	DNA-directed RNA polymerase n=1 Tax=Nostocaceae cy...	[more]
A0A1Z1MH01_9FLOR	1.500e-59	83.62	DNA-directed RNA polymerase subunit beta n=1 Tax=D...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1800.10	RNA polymerase alpha subunit dimerisation domain	coord: 70..103 e-value: 7.7E-6 score: 27.9
None	No IPR available	PANTHER	PTHR20856:SF20	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 7..103
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 6..115
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 66..108 e-value: 5.8E-17 score: 61.9
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 7..64 e-value: 2.4E-25 score: 89.4
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 2..69 e-value: 9.0E-31 score: 109.0
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 7..103

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_58	contig	Contig_58:779488..779835 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|128869	mRNA_9438	Tribonema minus UTEX_B_3156	mRNA	Contig_58 779488..779835 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|128869|gw1.58.1.1 ID=Trimin1|128869|gw1.58.1.1|Name=jgi.p|Trimin1|128869|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGP
YSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEG
RNEVLNAIVKGQPIPK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007641	RNA_pol_Rpb2_7
IPR007120	DNA-dir_RNAP_su2_dom
IPR037033	DNA-dir_RNAP_su2_hyb_sf
IPR015712	DNA-dir_RNA_pol_su2