mRNA_9438 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128869
Unique NamemRNA_9438
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A835YNT8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT8_9STRA)

HSP 1 Score: 236 bits (603), Expect = 4.940e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK
Sbjct:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 116
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1MUZ5_9FLOR (DNA-directed RNA polymerase (Fragment) n=1 Tax=Polysiphonia teges TaxID=2007110 RepID=A0A1Z1MUZ5_9FLOR)

HSP 1 Score: 203 bits (517), Expect = 3.980e-64
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            LFN   PGK IL DGRTGESFDNP+ VGK+Y+LKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+PIPK
Sbjct:   72 LFNYSHPGKTILFDGRTGESFDNPVTVGKAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPK 187
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: B7T1S6_VAULI (DNA-directed RNA polymerase subunit beta n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1S6_VAULI)

HSP 1 Score: 210 bits (535), Expect = 6.140e-61
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            LFN Y PGKV+L DGRTGE+FDNPILVGK+YILKLIHLVDDK+HAR+ GPYSL+TQQP+GGKSQ+GGQRFGEMEVWALEAFGAAYTLQELLTVKSDD++GRN VL AIVKGQPIPK
Sbjct:  928 LFNEYSPGKVLLKDGRTGENFDNPILVGKTYILKLIHLVDDKLHARSIGPYSLITQQPLGGKSQKGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDIQGRNNVLYAIVKGQPIPK 1043
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1M8S6_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Caloglossa beccarii TaxID=131038 RepID=A0A1Z1M8S6_9FLOR)

HSP 1 Score: 210 bits (534), Expect = 8.930e-61
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            LFN Y PGKVIL DGRTGESFDNPI VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAI+KG+PIPK
Sbjct:  949 LFNTYHPGKVILFDGRTGESFDNPITVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIIKGKPIPK 1064
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1M6G5_9FLOR (DNA-directed RNA polymerase subunit beta n=2 Tax=Caloglossa TaxID=31388 RepID=A0A1Z1M6G5_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 4.300e-60
Identity = 97/116 (83.62%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            LFN Y PGK+IL DGRTGE+FDNP+ VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAI+KG+PIPK
Sbjct:  949 LFNSYYPGKMILCDGRTGEAFDNPVTVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIIKGKPIPK 1064
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1MK38_9FLOR (DNA-directed RNA polymerase subunit beta n=2 Tax=Dasyaceae TaxID=35164 RepID=A0A1Z1MK38_9FLOR)

HSP 1 Score: 207 bits (528), Expect = 5.880e-60
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            LFN Y PGK+IL DGRTGE+FDNPI VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+PIPK
Sbjct:  949 LFNFYHPGKMILLDGRTGEAFDNPITVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPK 1064
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A516ZA65_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516ZA65_9STRA)

HSP 1 Score: 207 bits (527), Expect = 7.350e-60
Identity = 97/116 (83.62%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            LFN Y PG++ LTDGRTG+ FDNPI V K+Y+LKL+HLVDDKIHAR+TGPYSLVTQQP+GG+SQQGGQRFGEMEVWALEAFGAAYTLQELLT+KSDDM GRNE LNAIVKG+PIPK
Sbjct:  902 LFNNYSPGRISLTDGRTGDMFDNPITVCKTYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRSQQGGQRFGEMEVWALEAFGAAYTLQELLTIKSDDMHGRNEALNAIVKGEPIPK 1017
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A4D6WKU9_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Apoglossum ruscifolium TaxID=167976 RepID=A0A4D6WKU9_9FLOR)

HSP 1 Score: 207 bits (526), Expect = 1.100e-59
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            +FN Y PGK+IL DGRTGE FDNPI VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+PIPK
Sbjct:  949 IFNSYHPGKMILCDGRTGEPFDNPITVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPK 1064
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A838VWG5_9NOST (DNA-directed RNA polymerase n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VWG5_9NOST)

HSP 1 Score: 191 bits (484), Expect = 1.420e-59
Identity = 92/116 (79.31%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            +FN   PGK+ + DGRTGE FD  I VG +Y+LKL+HLVDDKIHAR+TGPYSLVTQQP+GGK+QQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+ IP+
Sbjct:   27 VFNPDNPGKIQVYDGRTGEPFDRAITVGVAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPR 142
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BLAST of jgi.p|Trimin1|128869 vs. uniprot
Match: A0A1Z1MH01_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Dasya naccarioides TaxID=2007180 RepID=A0A1Z1MH01_9FLOR)

HSP 1 Score: 206 bits (525), Expect = 1.500e-59
Identity = 97/116 (83.62%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGPYSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEGRNEVLNAIVKGQPIPK 348
            LFN Y PGK++L+DGRTG+ FDNPI VGK+YILKL+HLVDDKIHAR+TGPYSLVTQQP+GG++Q GGQR GEMEVWALEAFGAAYTLQELLTVKSDDM+GRNE LNAIVKG+PIPK
Sbjct:  949 LFNNYHPGKMMLSDGRTGQCFDNPITVGKAYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPK 1064
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128869 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNT8_9STRA4.940e-79100.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A1Z1MUZ5_9FLOR3.980e-6483.62DNA-directed RNA polymerase (Fragment) n=1 Tax=Pol... [more]
B7T1S6_VAULI6.140e-6186.21DNA-directed RNA polymerase subunit beta n=1 Tax=V... [more]
A0A1Z1M8S6_9FLOR8.930e-6186.21DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A1Z1M6G5_9FLOR4.300e-6083.62DNA-directed RNA polymerase subunit beta n=2 Tax=C... [more]
A0A1Z1MK38_9FLOR5.880e-6085.34DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]
A0A516ZA65_9STRA7.350e-6083.62DNA-directed RNA polymerase subunit beta n=1 Tax=F... [more]
A0A4D6WKU9_9FLOR1.100e-5984.48DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A838VWG5_9NOST1.420e-5979.31DNA-directed RNA polymerase n=1 Tax=Nostocaceae cy... [more]
A0A1Z1MH01_9FLOR1.500e-5983.62DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:779488..779835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128869|gw1.58.1.1
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
KEGG rclassRC02795
KEGG ReactionR00435,R00441,R00442,R00443
KEGG ModuleM00183
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG koko:K03043
EC2.7.7.6
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234
Preferred namerpoB
DescriptionDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COG categoryK
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0085@1|root,COG0085@2|Bacteria,1G14Y@1117|Cyanobacteria
Evalue6.91e-58
Seed ortholog65093.PCC7418_2118
Hectar predicted targeting categoryother localisation
TranscriptId129191
TrackFilteredModels1
ProteinId128869
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128869gene_9438Tribonema minus UTEX_B_3156 geneContig_58 779488..779835 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9438_1exon_9438_1Tribonema minus UTEX_B_3156 exonContig_58 779488..779835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9438CDS_9438Tribonema minus UTEX_B_3156 CDSContig_58 779488..779835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128869Trimin1|128869|gw1.58.1.1Tribonema minus UTEX_B_3156 polypeptideContig_58 779488..779835 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9438 ID=mRNA_9438|Name=jgi.p|Trimin1|128869|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_58:779488..779835+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTATTTAATAGATATTGTCCTGGAAAAGTTATTTTAACAGATGGTAGAAC
AGGGGAAAGTTTTGATAACCCTATTTTAGTAGGAAAAAGTTATATTTTAA
AACTTATTCATTTAGTAGATGATAAAATTCATGCACGTGCAACAGGCCCG
TATTCTTTAGTAACACAACAACCCGTTGGGGGCAAATCACAACAAGGTGG
ACAACGTTTTGGTGAAATGGAGGTCTGGGCGTTGGAAGCTTTTGGAGCTG
CTTATACACTACAAGAACTTTTAACGGTAAAGTCTGATGACATGGAAGGT
CGAAATGAAGTTTTAAATGCGATTGTCAAAGGTCAACCTATTCCTAAA
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protein sequence of jgi.p|Trimin1|128869

>Trimin1|128869|gw1.58.1.1 ID=Trimin1|128869|gw1.58.1.1|Name=jgi.p|Trimin1|128869|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
LFNRYCPGKVILTDGRTGESFDNPILVGKSYILKLIHLVDDKIHARATGP
YSLVTQQPVGGKSQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMEG
RNEVLNAIVKGQPIPK
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mRNA from alignment at Contig_58:779488..779835+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9438 ID=mRNA_9438|Name=jgi.p|Trimin1|128869|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_58:779488..779835+ (Tribonema minus UTEX_B_3156 )
TTATTTAATAGATATTGTCCTGGAAAAGTTATTTTAACAGATGGTAGAAC
AGGGGAAAGTTTTGATAACCCTATTTTAGTAGGAAAAAGTTATATTTTAA
AACTTATTCATTTAGTAGATGATAAAATTCATGCACGTGCAACAGGCCCG
TATTCTTTAGTAACACAACAACCCGTTGGGGGCAAATCACAACAAGGTGG
ACAACGTTTTGGTGAAATGGAGGTCTGGGCGTTGGAAGCTTTTGGAGCTG
CTTATACACTACAAGAACTTTTAACGGTAAAGTCTGATGACATGGAAGGT
CGAAATGAAGTTTTAAATGCGATTGTCAAAGGTCAACCTATTCCTAAA
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Coding sequence (CDS) from alignment at Contig_58:779488..779835+

>mRNA_9438 ID=mRNA_9438|Name=jgi.p|Trimin1|128869|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_58:779488..779835+ (Tribonema minus UTEX_B_3156 )
TTATTTAATAGATATTGTCCTGGAAAAGTTATTTTAACAGATGGTAGAAC
AGGGGAAAGTTTTGATAACCCTATTTTAGTAGGAAAAAGTTATATTTTAA
AACTTATTCATTTAGTAGATGATAAAATTCATGCACGTGCAACAGGCCCG
TATTCTTTAGTAACACAACAACCCGTTGGGGGCAAATCACAACAAGGTGG
ACAACGTTTTGGTGAAATGGAGGTCTGGGCGTTGGAAGCTTTTGGAGCTG
CTTATACACTACAAGAACTTTTAACGGTAAAGTCTGATGACATGGAAGGT
CGAAATGAAGTTTTAAATGCGATTGTCAAAGGTCAACCTATTCCTAAA
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