Trimin1|128765|gw1.20.4.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|128765
Unique NameTrimin1|128765|gw1.20.4.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length141
Homology
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835ZBV9_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV9_9STRA)

HSP 1 Score: 208 bits (529), Expect = 5.960e-67
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 141
            LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF
Sbjct:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 141          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835Z233_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z233_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.520e-39
Identity = 111/142 (78.17%), Postives = 115/142 (80.99%), Query Frame = 0
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXX-GAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 141
            LGTTYNEEAHTKTL RLQD +GRV  DAF +WYVEWLLGGD       XXXXXXXXXXXXXXXXXX GAGFGDMFKAAAGEWKC+ACLVRNAPGA KCASCETPAAG  A  XX XXXXXXXXXX     +G  I PSGFSF
Sbjct:  117 LGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSG--IGPSGFSF 256          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835Z9Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 9.800e-31
Identity = 84/113 (74.34%), Postives = 87/113 (76.99%), Query Frame = 0
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGA----GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVA 109
            LGTTYNEEAHTKTL+RLQD AGRV LDAF DWY+EWLLG         XXXXXXXXXXXXXXXXXX      GFGDMFKA AGEWKC+ACLVRN P A KC SCETP  GA A
Sbjct:  165 LGTTYNEEAHTKTLRRLQDGAGRVPLDAFLDWYIEWLLGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQGFGDMFKAVAGEWKCEACLVRNPPTAVKCVSCETPGPGAAA 277          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A1Z5KBE2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBE2_FISSO)

HSP 1 Score: 86.7 bits (213), Expect = 4.730e-17
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 0
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGAT-KCASCE 101
            LGTTY EE H +T+++L+D++G +  +AF  WY++WL GGD+    D                   G G+G++FKA  G WKC  C+V N PG T KC +CE
Sbjct:  805 LGTTYCEEEHRRTIRKLKDSSGIITENAFVSWYIDWLFGGDESDVEDSEEEEDEVDGVVTNELVATGTGWGNIFKAEEGSWKCSVCMVLN-PGETGKCKACE 905          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A7R9W639_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W639_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.180e-14
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 0
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAA---GEWKCDACLVRNAPGATKCASCE 101
            +GTTY EE H +T++++    G+VH DAF +WYV+WL G  +E   D    XXXXXXX          G+GD FK+     G WKC+ CLV+N P + KCA+CE
Sbjct:  155 MGTTYCEEEHRRTIKKIA-VEGKVHRDAFVEWYVDWLFGEGEE--DDEYSEXXXXXXXARDASKAAKQGWGDTFKSMGTKPGSWKCEFCLVQNDPDSIKCAACE 255          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A7S2VZZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZZ8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.850e-11
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 0
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLG--GDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCET 102
            +GT Y  +AH KT+++L D  GR+ ++AF +WY+ WL     D E+++                      G+GDMF      WKC +C+++N   A+ CA+CET
Sbjct:   50 MGTAYCADAHRKTVKKL-DKGGRISMEAFEEWYLNWLFCEIDDSESTNTSDNDLVSSTDNQADNTTNNNEGWGDMFTIDKDSWKCKSCMLQNKSDASSCAACET 152          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: UPI00074FBB38 (nuclear pore complex protein Nup153 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FBB38)

HSP 1 Score: 61.6 bits (148), Expect = 2.660e-8
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0
Query:   69 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 106
            GFGD FKAAAG W CD CLV+N P ATKC +CETP  G
Sbjct:  700 GFGDKFKAAAGSWDCDTCLVQNKPEATKCVACETPKPG 737          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A670IU33_PODMU (Nucleoporin 153 n=22 Tax=Lacertinae TaxID=162266 RepID=A0A670IU33_PODMU)

HSP 1 Score: 61.2 bits (147), Expect = 3.610e-8
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0
Query:   69 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 106
            GFGD FKAAAG W CD CLV+N P ATKC +CETP  G
Sbjct:  645 GFGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 682          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A8D2L1Y3_VARKO (Nucleoporin 153 n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2L1Y3_VARKO)

HSP 1 Score: 61.2 bits (147), Expect = 3.620e-8
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0
Query:   69 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 106
            GFGD FKAAAG W CD CLV+N P ATKC +CETP  G
Sbjct:  708 GFGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 745          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A8D0BIS9_9SAUR (Nucleoporin 153 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BIS9_9SAUR)

HSP 1 Score: 59.3 bits (142), Expect = 1.700e-7
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 0
Query:   70 FGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 106
            FGD FKAAAG W CD CLV+N P ATKC +CETP  G
Sbjct:  722 FGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 758          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835ZBV9_9STRA5.960e-67100.00RanBP2-type domain-containing protein (Fragment) n... [more]
A0A835Z233_9STRA6.520e-3978.17RanBP2-type domain-containing protein (Fragment) n... [more]
A0A835Z9Q0_9STRA9.800e-3174.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5KBE2_FISSO4.730e-1741.18Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9W639_9STRA8.180e-1446.15Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2VZZ8_9STRA1.850e-1133.65Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
UPI00074FBB382.660e-871.05nuclear pore complex protein Nup153 n=1 Tax=Gekko ... [more]
A0A670IU33_PODMU3.610e-871.05Nucleoporin 153 n=22 Tax=Lacertinae TaxID=162266 R... [more]
A0A8D2L1Y3_VARKO3.620e-871.05Nucleoporin 153 n=2 Tax=Varanus komodoensis TaxID=... [more]
A0A8D0BIS9_9SAUR1.700e-770.27Nucleoporin 153 n=1 Tax=Salvator merianae TaxID=96... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 79..103
e-value: 4.2E-6
score: 36.3
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 78..104
e-value: 5.8E-9
score: 35.1
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 81..100
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 77..106
score: 10.025985
NoneNo IPR availableGENE3D4.10.1060.10coord: 74..112
e-value: 9.4E-12
score: 46.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..62
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 78..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:550972..551394 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128765mRNA_4103Tribonema minus UTEX_B_3156 mRNAContig_20 550972..551394 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|128765|gw1.20.4.1 ID=Trimin1|128765|gw1.20.4.1|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGES
EDGSSSGGGSGGGAAAGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASC
ETPAAGAVAAAAAAPAVTADAAAAGHASTAGGSISPSGFSF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf